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Items: 17

1.

Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S.

Nat Methods. 2019 Jun;16(6):561. doi: 10.1038/s41592-019-0453-4.

PMID:
31097821
2.

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S.

Nat Methods. 2019 May;16(5):387-395. doi: 10.1038/s41592-019-0364-4. Epub 2019 Apr 8. Erratum in: Nat Methods. 2019 Jun;16(6):561.

PMID:
30962624
3.

TCR Affinity Biases Th Cell Differentiation by Regulating CD25, Eef1e1, and Gbp2.

Kotov DI, Mitchell JS, Pengo T, Ruedl C, Way SS, Langlois RA, Fife BT, Jenkins MK.

J Immunol. 2019 May 1;202(9):2535-2545. doi: 10.4049/jimmunol.1801609. Epub 2019 Mar 11.

PMID:
30858199
4.

Registration of the extracellular matrix components constituting the fibroblastic focus in idiopathic pulmonary fibrosis.

Herrera J, Forster C, Pengo T, Montero A, Swift J, Schwartz MA, Henke CA, Bitterman PB.

JCI Insight. 2019 Jan 10;4(1). pii: 125185. doi: 10.1172/jci.insight.125185. [Epub ahead of print]

5.

Salmonella Persist in Activated Macrophages in T Cell-Sparse Granulomas but Are Contained by Surrounding CXCR3 Ligand-Positioned Th1 Cells.

Goldberg MF, Roeske EK, Ward LN, Pengo T, Dileepan T, Kotov DI, Jenkins MK.

Immunity. 2018 Dec 18;49(6):1090-1102.e7. doi: 10.1016/j.immuni.2018.10.009. Epub 2018 Dec 11.

PMID:
30552021
6.

Chrysalis: A New Method for High-Throughput Histo-Cytometry Analysis of Images and Movies.

Kotov DI, Pengo T, Mitchell JS, Gastinger MJ, Jenkins MK.

J Immunol. 2019 Jan 1;202(1):300-308. doi: 10.4049/jimmunol.1801202. Epub 2018 Dec 3.

PMID:
30510065
7.

Muscle Satellite Cell Cross-Talk with a Vascular Niche Maintains Quiescence via VEGF and Notch Signaling.

Verma M, Asakura Y, Murakonda BSR, Pengo T, Latroche C, Chazaud B, McLoon LK, Asakura A.

Cell Stem Cell. 2018 Oct 4;23(4):530-543.e9. doi: 10.1016/j.stem.2018.09.007.

PMID:
30290177
8.

Aptamer micelles targeting fractalkine-expressing cancer cells in vitro and in vivo.

Harris MA, Pearce TR, Pengo T, Kuang H, Forster C, Kokkoli E.

Nanomedicine. 2018 Jan;14(1):85-96. doi: 10.1016/j.nano.2017.08.020. Epub 2017 Sep 11.

PMID:
28912042
9.

Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae.

Trussart M, Yus E, Martinez S, Baù D, Tahara YO, Pengo T, Widjaja M, Kretschmer S, Swoger J, Djordjevic S, Turnbull L, Whitchurch C, Miyata M, Marti-Renom MA, Lluch-Senar M, Serrano L.

Nat Commun. 2017 Mar 8;8:14665. doi: 10.1038/ncomms14665.

10.

Cytotoxic T Cells and Granzyme B Associated with Improved Colorectal Cancer Survival in a Prospective Cohort of Older Women.

Prizment AE, Vierkant RA, Smyrk TC, Tillmans LS, Nelson HH, Lynch CF, Pengo T, Thibodeau SN, Church TR, Cerhan JR, Anderson KE, Limburg PJ.

Cancer Epidemiol Biomarkers Prev. 2017 Apr;26(4):622-631. doi: 10.1158/1055-9965.EPI-16-0641. Epub 2016 Dec 15.

11.

Quantitative evaluation of software packages for single-molecule localization microscopy.

Sage D, Kirshner H, Pengo T, Stuurman N, Min J, Manley S, Unser M.

Nat Methods. 2015 Aug;12(8):717-24. doi: 10.1038/nmeth.3442. Epub 2015 Jun 15.

PMID:
26076424
12.

PALMsiever: a tool to turn raw data into results for single-molecule localization microscopy.

Pengo T, Holden SJ, Manley S.

Bioinformatics. 2015 Mar 1;31(5):797-8. doi: 10.1093/bioinformatics/btu720. Epub 2014 Oct 31.

13.

High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization.

Holden SJ, Pengo T, Meibom KL, Fernandez Fernandez C, Collier J, Manley S.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4566-71. doi: 10.1073/pnas.1313368111. Epub 2014 Mar 10.

14.

Efficient blind spectral unmixing of fluorescently labeled samples using multi-layer non-negative matrix factorization.

Pengo T, Muñoz-Barrutia A, Zudaire I, Ortiz-de-Solorzano C.

PLoS One. 2013 Nov 8;8(11):e78504. doi: 10.1371/journal.pone.0078504. eCollection 2013.

15.

Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions.

Gunzenhäuser J, Olivier N, Pengo T, Manley S.

Nano Lett. 2012 Sep 12;12(9):4705-10. doi: 10.1021/nl3021076. Epub 2012 Aug 27.

PMID:
22906128
16.

Halton sampling for autofocus.

Pengo T, Muñoz-Barrutia A, Ortiz-De-Solórzano C.

J Microsc. 2009 Jul;235(1):50-8. doi: 10.1111/j.1365-2818.2009.03180.x.

17.

Computer assisted detection of cancer cells in minimal samples of lung cancer.

Ortiz-de-Solorzano C, Ucar-Vargas B, Pengo T, Zudaire I, Montuenga LM, Munoz-Barrutia A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:5517-20.

PMID:
18003261

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