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Items: 37

1.

ZooKeys anniversary: 10 years of leadership toward open-access publishing of zoological data and establishment at Pensoft of like-minded sister journals across the biodiversity spectrum.

Erwin T, Stoev P, Penev L.

Zookeys. 2018 Jul 4;(770):1-8. doi: 10.3897/zookeys.770.28105. eCollection 2018. No abstract available.

2.

PhytoKeys at 100: progress in sustainability, innovation, and speed to enhance publication in plant systematics.

Kress WJ, Knapp S, Stoev P, Penev L.

PhytoKeys. 2018 Jun 21;(100):1-9. doi: 10.3897/phytokeys.100.27591. eCollection 2018. No abstract available.

3.

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.

Senderov V, Simov K, Franz N, Stoev P, Catapano T, Agosti D, Sautter G, Morris RA, Penev L.

J Biomed Semantics. 2018 Jan 18;9(1):5. doi: 10.1186/s13326-017-0174-5.

4.

Species Conservation Profiles compliant with the IUCN Red List of Threatened Species.

Cardoso P, Stoev P, Georgiev T, Senderov V, Penev L.

Biodivers Data J. 2016 Sep 1;(4):e10356. doi: 10.3897/BDJ.4.e10356. eCollection 2016. No abstract available.

5.

A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank).

Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P.

Zookeys. 2016 Jan 7;(550):233-46. doi: 10.3897/zookeys.550.9551. eCollection 2016.

6.

PESI - a taxonomic backbone for Europe.

de Jong Y, Kouwenberg J, Boumans L, Hussey C, Hyam R, Nicolson N, Kirk P, Paton A, Michel E, Guiry MD, Boegh PS, Pedersen HÆ, Enghoff H, von Raab-Straube E, Güntsch A, Geoffroy M, Müller A, Kohlbecker A, Berendsohn W, Appeltans W, Arvanitidis C, Vanhoorne B, Declerck J, Vandepitte L, Hernandez F, Nash R, Costello MJ, Ouvrard D, Bezard-Falgas P, Bourgoin T, Wetzel FT, Glöckler F, Korb G, Ring C, Hagedorn G, Häuser C, Aktaç N, Asan A, Ardelean A, Borges PA, Dhora D, Khachatryan H, Malicky M, Ibrahimov S, Tuzikov A, De Wever A, Moncheva S, Spassov N, Chobot K, Popov A, Boršić I, Sfenthourakis S, Kõljalg U, Uotila P, Olivier G, Dauvin JC, Tarkhnishvili D, Chaladze G, Tuerkay M, Legakis A, Peregovits L, Gudmundsson G, Ólafsson E, Lysaght L, Galil BS, Raimondo FM, Domina G, Stoch F, Minelli A, Spungis V, Budrys E, Olenin S, Turpel A, Walisch T, Krpach V, Gambin MT, Ungureanu L, Karaman G, Kleukers RM, Stur E, Aagaard K, Valland N, Moen TL, Bogdanowicz W, Tykarski P, Węsławski JM, Kędra M, M de Frias Martins A, Abreu AD, Silva R, Medvedev S, Ryss A, Šimić S, Marhold K, Stloukal E, Tome D, Ramos MA, Valdés B, Pina F, Kullander S, Telenius A, Gonseth Y, Tschudin P, Sergeyeva O, Vladymyrov V, Rizun VB, Raper C, Lear D, Stoev P, Penev L, Rubio AC, Backeljau T, Saarenmaa H, Ulenberg S.

Biodivers Data J. 2015 Sep 28;(3):e5848. doi: 10.3897/BDJ.3.e5848. eCollection 2015.

7.

Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve.

Telfer AC, Young MR, Quinn J, Perez K, Sobel CN, Sones JE, Levesque-Beaudin V, Derbyshire R, Fernandez-Triana J, Rougerie R, Thevanayagam A, Boskovic A, Borisenko AV, Cadel A, Brown A, Pages A, Castillo AH, Nicolai A, Glenn Mockford BM, Bukowski B, Wilson B, Trojahn B, Lacroix CA, Brimblecombe C, Hay C, Ho C, Steinke C, Warne CP, Garrido Cortes C, Engelking D, Wright D, Lijtmaer DA, Gascoigne D, Hernandez Martich D, Morningstar D, Neumann D, Steinke D, Marco DeBruin DD, Dobias D, Sears E, Richard E, Damstra E, Zakharov EV, Laberge F, Collins GE, Blagoev GA, Grainge G, Ansell G, Meredith G, Hogg I, McKeown J, Topan J, Bracey J, Guenther J, Sills-Gilligan J, Addesi J, Persi J, Layton KK, D'Souza K, Dorji K, Grundy K, Nghidinwa K, Ronnenberg K, Lee KM, Xie L, Lu L, Penev L, Gonzalez M, Rosati ME, Kekkonen M, Kuzmina M, Iskandar M, Mutanen M, Fatahi M, Pentinsaari M, Bauman M, Nikolova N, Ivanova NV, Jones N, Weerasuriya N, Monkhouse N, Lavinia PD, Jannetta P, Hanisch PE, McMullin RT, Ojeda Flores R, Mouttet R, Vender R, Labbee RN, Forsyth R, Lauder R, Dickson R, Kroft R, Miller SE, MacDonald S, Panthi S, Pedersen S, Sobek-Swant S, Naik S, Lipinskaya T, Eagalle T, Decaëns T, Kosuth T, Braukmann T, Woodcock T, Roslin T, Zammit T, Campbell V, Dinca V, Peneva V, Hebert PD, deWaard JR.

Biodivers Data J. 2015 Aug 30;(3):e6313. doi: 10.3897/BDJ.3.e6313. eCollection 2015.

8.

Integrating and visualizing primary data from prospective and legacy taxonomic literature.

Miller JA, Agosti D, Penev L, Sautter G, Georgiev T, Catapano T, Patterson D, King D, Pereira S, Vos RA, Sierra S.

Biodivers Data J. 2015 May 12;(3):e5063. doi: 10.3897/BDJ.3.e5063. eCollection 2015.

9.

ZooKeys 500: traditions and innovations hand-in-hand servicing our taxonomic community.

Erwin T, Stoev P, Georgiev T, Penev L.

Zookeys. 2015 Apr 27;(500):1-8. doi: 10.3897/zookeys.500.9844. eCollection 2015. No abstract available.

10.

Community next steps for making globally unique identifiers work for biocollections data.

Guralnick RP, Cellinese N, Deck J, Pyle RL, Kunze J, Penev L, Walls R, Hagedorn G, Agosti D, Wieczorek J, Catapano T, Page RD.

Zookeys. 2015 Apr 6;(494):133-54. doi: 10.3897/zookeys.494.9352. eCollection 2015.

11.

Corrected data re-harvested: curating literature in the era of networked biodiversity informatics.

Miller JA, Georgiev T, Stoev P, Sautter G, Penev L.

Biodivers Data J. 2015 Jan 21;(3):e4552. doi: 10.3897/BDJ.3.e4552. eCollection 2015. No abstract available.

12.

Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae).

Fernandez-Triana JL, Penev L, Ratnasingham S, Smith MA, Sones J, Telfer A, deWaard JR, Hebert PD.

Biodivers Data J. 2014 Oct 29;(2):e4153. doi: 10.3897/BDJ.2.e4153. eCollection 2014.

13.

Fauna Europaea - all European animal species on the web.

de Jong Y, Verbeek M, Michelsen V, Bjørn Pde P, Los W, Steeman F, Bailly N, Basire C, Chylarecki P, Stloukal E, Hagedorn G, Wetzel FT, Glöckler F, Kroupa A, Korb G, Hoffmann A, Häuser C, Kohlbecker A, Müller A, Güntsch A, Stoev P, Penev L.

Biodivers Data J. 2014 Sep 17;(2):e4034. doi: 10.3897/BDJ.2.e4034. eCollection 2014.

14.

Enriched biodiversity data as a resource and service.

Vos RA, Biserkov JV, Balech B, Beard N, Blissett M, Brenninkmeijer C, van Dooren T, Eades D, Gosline G, Groom QJ, Hamann TD, Hettling H, Hoehndorf R, Holleman A, Hovenkamp P, Kelbert P, King D, Kirkup D, Lammers Y, DeMeulemeester T, Mietchen D, Miller JA, Mounce R, Nicolson N, Page R, Pawlik A, Pereira S, Penev L, Richards K, Sautter G, Shorthouse DP, Tähtinen M, Weiland C, Williams AR, Sierra S.

Biodivers Data J. 2014 Jun 16;(2):e1125. doi: 10.3897/BDJ.2.e1125. eCollection 2014.

15.

Biodiversity research in the "big data" era: GigaScience and Pensoft work together to publish the most data-rich species description.

Edmunds SC, Hunter CI, Smith V, Stoev P, Penev L.

Gigascience. 2013 Oct 28;2(1):14. doi: 10.1186/2047-217X-2-14.

16.

Revolving images and multi-image keys open new horizons in descriptive taxonomy: ZooKeys working examples.

Stoev P, Penev L, Akkari N, Cheung DK, Enghoff H, Brunke A, de Souza CM, Pape T, Mietchen D, Erwin T.

Zookeys. 2013 Sep 3;(328):1-3. doi: 10.3897/zookeys.328.6171. eCollection 2013. No abstract available.

17.

A decadal view of biodiversity informatics: challenges and priorities.

Hardisty A, Roberts D; Biodiversity Informatics Community, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N, Belbin L, Berendsohn W, Bertrand N, Caithness N, Campbell D, Cochrane G, Conruyt N, Culham A, Damgaard C, Davies N, Fady B, Faulwetter S, Feest A, Field D, Garnier E, Geser G, Gilbert J, Grosche, Grosser D, Hardisty A, Herbinet B, Hobern D, Jones A, de Jong Y, King D, Knapp S, Koivula H, Los W, Meyer C, Morris RA, Morrison N, Morse D, Obst M, Pafilis E, Page LM, Page R, Pape T, Parr C, Paton A, Patterson D, Paymal E, Penev L, Pollet M, Pyle R, von Raab-Straube E, Robert V, Roberts D, Robertson T, Rovellotti O, Saarenmaa H, Schalk P, Schaminee J, Schofield P, Sier A, Sierra S, Smith V, van Spronsen E, Thornton-Wood S, van Tienderen P, van Tol J, Tuama ÉÓ, Uetz P, Vaas L, Vignes Lebbe R, Vision T, Vu D, De Wever A, White R, Willis K, Young F.

BMC Ecol. 2013 Apr 15;13:16. doi: 10.1186/1472-6785-13-16. Review.

18.

Accelerating innovative publishing in taxonomy and systematics: 250 issues of ZooKeys.

Erwin T, Penev L, Stoev P, Georgiev T.

Zookeys. 2012;(251):1-10. doi: 10.3897/zookeys.251.4516. Epub 2012 Dec 18. No abstract available.

19.

Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal.

Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur TL, Mueller G, Dikow T, Helgen KM, Frank J, Agosti D, Roberts D, Penev L.

Biodivers Data J. 2013 Sep 16;(1):e995. doi: 10.3897/BDJ.1.e995. eCollection 2013. No abstract available.

20.

Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data.

Stoev P, Komerički A, Akkari N, Liu S, Zhou X, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L.

Biodivers Data J. 2013 Oct 28;(1):e1013. doi: 10.3897/BDJ.1.e1013. eCollection 2013.

21.

From taxonomic literature to cybertaxonomic content.

Miller J, Dikow T, Agosti D, Sautter G, Catapano T, Penev L, Zhang ZQ, Pentcheff D, Pyle R, Blum S, Parr C, Freeland C, Garnett T, Ford LS, Muller B, Smith L, Strader G, Georgiev T, Bénichou L.

BMC Biol. 2012 Oct 31;10:87. doi: 10.1186/1741-7007-10-87. No abstract available.

22.

Publishing online identification keys in the form of scholarly papers.

Penev L, Cerretti P, Tschorsnig HP, Lopresti M, Giovanni FD, Georgiev T, Stoev P, Erwin TL.

Zookeys. 2012;(205):1-3. doi: 10.3897/zookeys.205.3581. Epub 2012 Jul 4. No abstract available.

23.
24.

Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group.

Moritz T, Krishnan S, Roberts D, Ingwersen P, Agosti D, Penev L, Cockerill M, Chavan V; Data Publishing Framework Task Group.

BMC Bioinformatics. 2011;12 Suppl 15:S1. doi: 10.1186/1471-2105-12-S15-S1. Epub 2011 Dec 15.

25.

From text to structured data: Converting a word-processed floristic checklist into Darwin Core Archive format.

Remsen D, Knapp S, Georgiev T, Stoev P, Penev L.

PhytoKeys. 2012;(9):1-13. doi: 10.3897/phytokeys.9.2770. Epub 2012 Jan 30.

26.
27.

On the front line of modern data-management and Open Access publishing: Two years of PhytoKeys - the fastest growing journal in plant systematics.

Kress WJ, Knapp S, Stoev P, Penev L.

PhytoKeys. 2012 Dec 18;(19):1-8. doi: 10.3897/phytokeys.19.4501. Print 2012. No abstract available.

28.

Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT.

Arvanitidis C, Faulwetter S, Chatzigeorgiou G, Penev L, Bánki O, Dailianis T, Pafilis E, Kouratoras M, Chatzinikolaou E, Fanini L, Vasileiadou A, Pavloudi C, Vavilis P, Koulouri P, Dounas C.

Zookeys. 2011;(150):211-29. doi: 10.3897/zookeys.150.2149. Epub 2011 Nov 28.

29.

Creative Commons licenses and the non-commercial condition: Implications for the re-use of biodiversity information.

Hagedorn G, Mietchen D, Morris RA, Agosti D, Penev L, Berendsohn WG, Hobern D.

Zookeys. 2011;(150):127-49. doi: 10.3897/zookeys.150.2189. Epub 2011 Nov 28.

30.

XML schemas and mark-up practices of taxonomic literature.

Penev L, Lyal CH, Weitzman A, Morse DR, King D, Sautter G, Georgiev T, Morris RA, Catapano T, Agosti D.

Zookeys. 2011;(150):89-116. doi: 10.3897/zookeys.150.2213. Epub 2011 Nov 28.

31.

ZooKeys 150: Three and a half years of innovative publishing and growth.

Erwin T, Stoev P, Georgiev T, Penev L.

Zookeys. 2011;(150):5-14. doi: 10.3897/zookeys.150.2431. Epub 2011 Nov 28. No abstract available.

32.

Collaborative electronic infrastructures to accelerate taxonomic research.

Smith VS, Penev L.

Zookeys. 2011;(150):1-3. doi: 10.3897/zookeys.150.2458. Epub 2011 Nov 28. No abstract available.

33.

Interlinking journal and wiki publications through joint citation: Working examples from ZooKeys and Plazi on Species-ID.

Penev L, Hagedorn G, Mietchen D, Georgiev T, Stoev P, Sautter G, Agosti D, Plank A, Balke M, Hendrich L, Erwin T.

Zookeys. 2011 Apr 14;(90):1-12. doi: 10.3897/zookeys.90.1369.

34.

Fast, linked, and open - the future of taxonomic publishing for plants: launching the journal PhytoKeys.

Penev L, Kress WJ, Knapp S, Li DZ, Renner S.

PhytoKeys. 2010;(1):1-14. doi: 10.3897/phytokeys.1.642. Epub 2010 Nov 1.

35.
36.

Streamlining taxonomic publication: a working example with Scratchpads and ZooKeys.

Blagoderov V, Brake I, Georgiev T, Penev L, Roberts D, Ryrcroft S, Scott B, Agosti D, Catapano T, Smith VS.

Zookeys. 2010 Jun 30;(50):17-28. doi: 10.3897/zookeys.50.539.

37.

Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Penev L, Agosti D, Georgiev T, Catapano T, Miller J, Blagoderov V, Roberts D, Smith VS, Brake I, Ryrcroft S, Scott B, Johnson NF, Morris RA, Sautter G, Chavan V, Robertson T, Remsen D, Stoev P, Parr C, Knapp S, Kress WJ, Thompson CF, Erwin T.

Zookeys. 2010 Jun 30;(50):1-16. doi: 10.3897/zookeys.50.538.

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