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Items: 49

1.

Relationship between Deleterious Variation, Genomic Autozygosity, and Disease Risk: Insights from The 1000 Genomes Project.

Pemberton TJ, Szpiech ZA.

Am J Hum Genet. 2018 Apr 5;102(4):658-675. doi: 10.1016/j.ajhg.2018.02.013. Epub 2018 Mar 15.

PMID:
29551419
2.

Structural Basis for the Substrate Inhibition of Proline Utilization A by Proline.

Korasick DA, Pemberton TA, Arentson BW, Becker DF, Tanner JJ.

Molecules. 2017 Dec 23;23(1). pii: E32. doi: 10.3390/molecules23010032.

3.

Weighted likelihood inference of genomic autozygosity patterns in dense genotype data.

Blant A, Kwong M, Szpiech ZA, Pemberton TJ.

BMC Genomics. 2017 Dec 1;18(1):928. doi: 10.1186/s12864-017-4312-3.

4.

Parallel Trajectories of Genetic and Linguistic Admixture in a Genetically Admixed Creole Population.

Verdu P, Jewett EM, Pemberton TJ, Rosenberg NA, Baptista M.

Curr Biol. 2017 Aug 21;27(16):2529-2535.e3. doi: 10.1016/j.cub.2017.07.002. Epub 2017 Aug 10.

PMID:
28803872
5.

Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.

Korasick DA, Singh H, Pemberton TA, Luo M, Dhatwalia R, Tanner JJ.

FEBS J. 2017 Sep;284(18):3029-3049. doi: 10.1111/febs.14165. Epub 2017 Aug 1.

PMID:
28710792
6.

Linkage disequilibrium matches forensic genetic records to disjoint genomic marker sets.

Edge MD, Algee-Hewitt BFB, Pemberton TJ, Li JZ, Rosenberg NA.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5671-5676. doi: 10.1073/pnas.1619944114. Epub 2017 May 15.

7.

Exploring the Influence of Domain Architecture on the Catalytic Function of Diterpene Synthases.

Pemberton TA, Chen M, Harris GG, Chou WK, Duan L, Köksal M, Genshaft AS, Cane DE, Christianson DW.

Biochemistry. 2017 Apr 11;56(14):2010-2023. doi: 10.1021/acs.biochem.7b00137. Epub 2017 Mar 31.

8.

GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification.

Szpiech ZA, Blant A, Pemberton TJ.

Bioinformatics. 2017 Jul 1;33(13):2059-2062. doi: 10.1093/bioinformatics/btx102.

9.

EF5 Is the High-Affinity Mg(2+) Site in ALG-2.

Tanner JJ, Frey BB, Pemberton T, Henzl MT.

Biochemistry. 2016 Sep 13;55(36):5128-41. doi: 10.1021/acs.biochem.6b00596. Epub 2016 Aug 31.

PMID:
27541325
10.

Multi-domain terpenoid cyclase architecture and prospects for proximity in bifunctional catalysis.

Chen M, Harris GG, Pemberton TA, Christianson DW.

Curr Opin Struct Biol. 2016 Dec;41:27-37. doi: 10.1016/j.sbi.2016.05.010. Epub 2016 Jun 7. Review.

11.

General base-general acid catalysis by terpenoid cyclases.

Pemberton TA, Christianson DW.

J Antibiot (Tokyo). 2016 Jul;69(7):486-93. doi: 10.1038/ja.2016.39. Epub 2016 Apr 13. Review.

12.

Structural Studies of Geosmin Synthase, a Bifunctional Sesquiterpene Synthase with αα Domain Architecture That Catalyzes a Unique Cyclization-Fragmentation Reaction Sequence.

Harris GG, Lombardi PM, Pemberton TA, Matsui T, Weiss TM, Cole KE, Köksal M, Murphy FV 4th, Vedula LS, Chou WK, Cane DE, Christianson DW.

Biochemistry. 2015 Dec 8;54(48):7142-55. doi: 10.1021/acs.biochem.5b01143. Epub 2015 Nov 24.

13.

A comparison of worldwide phonemic and genetic variation in human populations.

Creanza N, Ruhlen M, Pemberton TJ, Rosenberg NA, Feldman MW, Ramachandran S.

Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1265-72. doi: 10.1073/pnas.1424033112. Epub 2015 Jan 20.

14.

Sequence differences at orthologous microsatellites inflate estimates of human-chimpanzee differentiation.

Kwong M, Pemberton TJ.

BMC Genomics. 2014 Nov 18;15:990. doi: 10.1186/1471-2164-15-990.

15.

Patterns of admixture and population structure in native populations of Northwest North America.

Verdu P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski JS, Rosenberg NA, Malhi RS.

PLoS Genet. 2014 Aug 14;10(8):e1004530. doi: 10.1371/journal.pgen.1004530. eCollection 2014 Aug.

16.

Population-genetic influences on genomic estimates of the inbreeding coefficient: a global perspective.

Pemberton TJ, Rosenberg NA.

Hum Hered. 2014;77(1-4):37-48. doi: 10.1159/000362878. Epub 2014 Jul 29.

17.

Kinetic and structural characterization of tunnel-perturbing mutants in Bradyrhizobium japonicum proline utilization A.

Arentson BW, Luo M, Pemberton TA, Tanner JJ, Becker DF.

Biochemistry. 2014 Aug 12;53(31):5150-61. doi: 10.1021/bi5007404. Epub 2014 Jul 30.

18.

Structural studies of yeast Δ(1)-pyrroline-5-carboxylate dehydrogenase (ALDH4A1): active site flexibility and oligomeric state.

Pemberton TA, Srivastava D, Sanyal N, Henzl MT, Becker DF, Tanner JJ.

Biochemistry. 2014 Mar 4;53(8):1350-9. doi: 10.1021/bi500048b. Epub 2014 Feb 17.

19.

A mutation in the canine gene encoding folliculin-interacting protein 2 (FNIP2) associated with a unique disruption in spinal cord myelination.

Pemberton TJ, Choi S, Mayer JA, Li FY, Gokey N, Svaren J, Safra N, Bannasch DL, Sullivan K, Breuhaus B, Patel PI, Duncan ID.

Glia. 2014 Jan;62(1):39-51. doi: 10.1002/glia.22582.

20.

Runs of homozygosity and parental relatedness.

Rosenberg NA, Pemberton TJ, Li JZ, Belmont JW.

Genet Med. 2013 Sep;15(9):753-4. doi: 10.1038/gim.2013.108. No abstract available.

PMID:
24008258
21.

Structural basis of substrate selectivity of Δ(1)-pyrroline-5-carboxylate dehydrogenase (ALDH4A1): semialdehyde chain length.

Pemberton TA, Tanner JJ.

Arch Biochem Biophys. 2013 Oct 1;538(1):34-40. doi: 10.1016/j.abb.2013.07.024. Epub 2013 Aug 6.

22.

Long runs of homozygosity are enriched for deleterious variation.

Szpiech ZA, Xu J, Pemberton TJ, Peng W, Zöllner S, Rosenberg NA, Li JZ.

Am J Hum Genet. 2013 Jul 11;93(1):90-102. doi: 10.1016/j.ajhg.2013.05.003. Epub 2013 Jun 6.

23.

Population structure in a comprehensive genomic data set on human microsatellite variation.

Pemberton TJ, DeGiorgio M, Rosenberg NA.

G3 (Bethesda). 2013 May 20;3(5):891-907. doi: 10.1534/g3.113.005728.

24.

Genomic patterns of homozygosity in worldwide human populations.

Pemberton TJ, Absher D, Feldman MW, Myers RM, Rosenberg NA, Li JZ.

Am J Hum Genet. 2012 Aug 10;91(2):275-92. doi: 10.1016/j.ajhg.2012.06.014.

25.

Proline: Mother Nature's cryoprotectant applied to protein crystallography.

Pemberton TA, Still BR, Christensen EM, Singh H, Srivastava D, Tanner JJ.

Acta Crystallogr D Biol Crystallogr. 2012 Aug;68(Pt 8):1010-8. doi: 10.1107/S0907444912019580. Epub 2012 Jul 17.

26.

Impact of restricted marital practices on genetic variation in an endogamous Gujarati group.

Pemberton TJ, Li FY, Hanson EK, Mehta NU, Choi S, Ballantyne J, Belmont JW, Rosenberg NA, Tyler-Smith C, Patel PI.

Am J Phys Anthropol. 2012 Sep;149(1):92-103. doi: 10.1002/ajpa.22101. Epub 2012 Jun 23.

27.

Haplotype variation and genotype imputation in African populations.

Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA.

Genet Epidemiol. 2011 Dec;35(8):766-80. doi: 10.1002/gepi.20626.

28.

Plantar pressure of clipless and toe-clipped pedals in cyclists - A pilot study.

Davis A, Pemberton T, Ghosh S, Maffulli N, Padhiar N.

Muscles Ligaments Tendons J. 2011 Oct 30;1(1):20-4. Print 2011 Jan.

29.

Inference of unexpected genetic relatedness among individuals in HapMap Phase III.

Pemberton TJ, Wang C, Li JZ, Rosenberg NA.

Am J Hum Genet. 2010 Oct 8;87(4):457-64. doi: 10.1016/j.ajhg.2010.08.014.

30.

Comparing spatial maps of human population-genetic variation using Procrustes analysis.

Wang C, Szpiech ZA, Degnan JH, Jakobsson M, Pemberton TJ, Hardy JA, Singleton AB, Rosenberg NA.

Stat Appl Genet Mol Biol. 2010;9:Article 13. doi: 10.2202/1544-6115.1493. Epub 2010 Jan 27.

31.

Lack of population diversity in commonly used human embryonic stem-cell lines.

Mosher JT, Pemberton TJ, Harter K, Wang C, Buzbas EO, Dvorak P, Simón C, Morrison SJ, Rosenberg NA.

N Engl J Med. 2010 Jan 14;362(2):183-5. doi: 10.1056/NEJMc0910371. Epub 2009 Dec 16. No abstract available.

32.

Sequence determinants of human microsatellite variability.

Pemberton TJ, Sandefur CI, Jakobsson M, Rosenberg NA.

BMC Genomics. 2009 Dec 16;10:612. doi: 10.1186/1471-2164-10-612.

34.

Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India.

Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA.

Ann Hum Genet. 2008 Jul;72(Pt 4):535-46. doi: 10.1111/j.1469-1809.2008.00457.x. Epub 2007 May 30.

35.

Prevalence of common disease-associated variants in Asian Indians.

Pemberton TJ, Mehta NU, Witonsky D, Di Rienzo A, Allayee H, Conti DV, Patel PI.

BMC Genet. 2008 Feb 4;9:13. doi: 10.1186/1471-2156-9-13.

36.

The RTK/RAS/BRAF/PI3K pathways in melanoma: biology, small molecule inhibitors, and potential applications.

Haluska F, Pemberton T, Ibrahim N, Kalinsky K.

Semin Oncol. 2007 Dec;34(6):546-54. Review.

PMID:
18083378
37.

Inherited dental anomalies: a review and prospects for the future role of clinicians.

Pemberton TJ, Mendoza G, Gee J, Patel PI.

J Calif Dent Assoc. 2007 May;35(5):324-6, 328-33. Review.

PMID:
17822158
38.

Identification of novel genes expressed during mouse tooth development by microarray gene expression analysis.

Pemberton TJ, Li FY, Oka S, Mendoza-Fandino GA, Hsu YH, Bringas P Jr, Chai Y, Snead ML, Mehrian-Shai R, Patel PI.

Dev Dyn. 2007 Aug;236(8):2245-57.

39.

A novel Gln358Glu mutation in ectodysplasin A associated with X-linked dominant incisor hypodontia.

Tarpey P, Pemberton TJ, Stockton DW, Das P, Ninis V, Edkins S, Andrew Futreal P, Wooster R, Kamath S, Nayak R, Stratton MR, Patel PI.

Am J Med Genet A. 2007 Feb 15;143(4):390-4. No abstract available.

PMID:
17256800
40.

A simple method for DNA isolation from clotted blood extricated rapidly from serum separator tubes.

Se Fum Wong S, Kuei JJ, Prasad N, Agonafer E, Mendoza GA, Pemberton TJ, Patel PI.

Clin Chem. 2007 Mar;53(3):522-4. Epub 2007 Jan 18.

41.

A new locus for autosomal dominant amelogenesis imperfecta on chromosome 8q24.3.

Mendoza G, Pemberton TJ, Lee K, Scarel-Caminaga R, Mehrian-Shai R, Gonzalez-Quevedo C, Ninis V, Hartiala J, Allayee H, Snead ML, Leal SM, Line SR, Patel PI.

Hum Genet. 2007 Jan;120(5):653-62. Epub 2006 Sep 21.

PMID:
17024372
43.

Gene discovery for dental anomalies: a primer for the dental professional.

Pemberton TJ, Gee J, Patel PI.

J Am Dent Assoc. 2006 Jun;137(6):743-52. Review.

PMID:
16803803
44.
45.

The cyclophilin repertoire of the fission yeast Schizosaccharomyces pombe.

Pemberton TJ, Kay JE.

Yeast. 2005 Sep;22(12):927-45. Review.

47.

Identification and characterisation of Schizosaccharomyces pombe cyclophilin 3, a cyclosporin A insensitive orthologue of human USA-CyP.

Pemberton TJ, Rulten SL, Kay JE.

J Chromatogr B Analyt Technol Biomed Life Sci. 2003 Mar 25;786(1-2):81-91.

PMID:
12651004
48.

The care of a colostomy.

BIRCH CA, PEMBERTON TM.

Practitioner. 1952 Nov;169(1013):509-16. No abstract available.

PMID:
13003781
49.

Observations on diseases among British prisoners of war in Japanese hands in the Far East, 1942-1945.

PEMBERTON TM.

N Z Med J. 1949 Apr;48(264):145-50. No abstract available.

PMID:
18138687

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