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Items: 1 to 50 of 57

1.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Aug 12. doi: 10.1038/s41587-019-0217-9. [Epub ahead of print]

PMID:
31406327
2.

Recent studies of docking and molecular dynamics simulation for liquid-phase enantioseparations.

Peluso P, Dessì A, Dallocchio R, Mamane V, Cossu S.

Electrophoresis. 2019 Aug;40(15):1881-1896. doi: 10.1002/elps.201800493. Epub 2019 Feb 12. Review.

PMID:
30710444
3.

Improved reference genome of Aedes aegypti informs arbovirus vector control.

Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, Campbell CL, Chan S, Cox E, Evans BR, Fansiri T, Filipović I, Fontaine A, Gloria-Soria A, Hall R, Joardar VS, Jones AK, Kay RGG, Kodali VK, Lee J, Lycett GJ, Mitchell SN, Muehling J, Murphy MR, Omer AD, Partridge FA, Peluso P, Aiden AP, Ramasamy V, Rašić G, Roy S, Saavedra-Rodriguez K, Sharan S, Sharma A, Smith ML, Turner J, Weakley AM, Zhao Z, Akbari OS, Black WC 4th, Cao H, Darby AC, Hill CA, Johnston JS, Murphy TD, Raikhel AS, Sattelle DB, Sharakhov IV, White BJ, Zhao L, Aiden EL, Mann RS, Lambrechts L, Powell JR, Sharakhova MV, Tu Z, Robertson HM, McBride CS, Hastie AR, Korlach J, Neafsey DE, Phillippy AM, Vosshall LB.

Nature. 2018 Nov;563(7732):501-507. doi: 10.1038/s41586-018-0692-z. Epub 2018 Nov 14.

4.

Therapist and client emotional expression and psychotherapy outcomes: A meta-analysis.

Peluso PR, Freund RR.

Psychotherapy (Chic). 2018 Dec;55(4):461-472. doi: 10.1037/pst0000165.

PMID:
30335458
5.

Enantioseparation of fluorinated 3-arylthio-4,4'-bipyridines: Insights into chalcogen and π-hole bonds in high-performance liquid chromatography.

Peluso P, Gatti C, Dessì A, Dallocchio R, Weiss R, Aubert E, Pale P, Cossu S, Mamane V.

J Chromatogr A. 2018 Sep 14;1567:119-129. doi: 10.1016/j.chroma.2018.06.060. Epub 2018 Jun 25.

PMID:
29961652
6.

Halogen bond in high-performance liquid chromatography enantioseparations: Description, features and modelling.

Dallocchio R, Dessì A, Solinas M, Arras A, Cossu S, Aubert E, Mamane V, Peluso P.

J Chromatogr A. 2018 Aug 17;1563:71-81. doi: 10.1016/j.chroma.2018.05.061. Epub 2018 May 30.

PMID:
29871805
7.

Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential.

Carro L, Nouioui I, Sangal V, Meier-Kolthoff JP, Trujillo ME, Montero-Calasanz MDC, Sahin N, Smith DL, Kim KE, Peluso P, Deshpande S, Woyke T, Shapiro N, Kyrpides NC, Klenk HP, Göker M, Goodfellow M.

Sci Rep. 2018 Jan 11;8(1):525. doi: 10.1038/s41598-017-17392-0.

8.

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, Eichler EE.

Genome Res. 2018 Jan;28(1):144. doi: 10.1101/gr.233007.117. No abstract available.

9.

Polysaccharide-based chiral stationary phases as halogen bond acceptors: A novel strategy for detection of stereoselective σ-hole bonds in solution.

Peluso P, Mamane V, Dallocchio R, Dessì A, Villano R, Sanna D, Aubert E, Pale P, Cossu S.

J Sep Sci. 2018 Mar;41(6):1247-1256. doi: 10.1002/jssc.201701206. Epub 2018 Jan 16.

PMID:
29239526
10.

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.

Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA.

Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7.

11.

Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.

PMID:
28605751
12.

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.

Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, Steinberg KM, Auger K, Chow W, Collins J, Harden G, Hubbard T, Pelan S, Simpson JT, Threadgold G, Torrance J, Wood JM, Clarke L, Koren S, Boitano M, Peluso P, Li H, Chin CS, Phillippy AM, Durbin R, Wilson RK, Flicek P, Eichler EE, Church DM.

Genome Res. 2017 May;27(5):849-864. doi: 10.1101/gr.213611.116. Epub 2017 Apr 10.

13.

Recent trends and applications in liquid-phase chromatography enantioseparation of atropisomers.

Peluso P, Mamane V, Aubert E, Cossu S.

Electrophoresis. 2017 Aug;38(15):1830-1850. doi: 10.1002/elps.201600502. Epub 2017 Feb 24. Review.

PMID:
28168709
14.

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.

Tørresen OK, Star B, Jentoft S, Reinar WB, Grove H, Miller JR, Walenz BP, Knight J, Ekholm JM, Peluso P, Edvardsen RB, Tooming-Klunderud A, Skage M, Lien S, Jakobsen KS, Nederbragt AJ.

BMC Genomics. 2017 Jan 18;18(1):95. doi: 10.1186/s12864-016-3448-x.

15.

Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, Eichler EE.

Genome Res. 2017 May;27(5):677-685. doi: 10.1101/gr.214007.116. Epub 2016 Nov 28. Erratum in: Genome Res. 2018 Jan;28(1):144.

16.

Channels with ordered water and bipyridine mol-ecules in the porous coordination polymer {[Cu(SiF6)(C10H8N2)2]·2C10N2H8·5H2O} n.

Aubert E, Doudouh A, Peluso P, Mamane V.

Acta Crystallogr E Crystallogr Commun. 2016 Oct 25;72(Pt 11):1654-1658. eCollection 2016 Nov 1.

17.

Phased diploid genome assembly with single-molecule real-time sequencing.

Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, Rank DR, Schatz MC.

Nat Methods. 2016 Dec;13(12):1050-1054. doi: 10.1038/nmeth.4035. Epub 2016 Oct 17.

18.

Synthesis and Enantiomeric Separation of a Novel Spiroketal Derivative: A Potent Human Telomerase Inhibitor with High in Vitro Anticancer Activity.

Fuggetta MP, De Mico A, Cottarelli A, Morelli F, Zonfrillo M, Ulgheri F, Peluso P, Mannu A, Deligia F, Marchetti M, Roviello G, Reyes Romero A, Dömling A, Spanu P.

J Med Chem. 2016 Oct 13;59(19):9140-9149. Epub 2016 Sep 19.

PMID:
27592503
19.

Insights into halogen bond-driven enantioseparations.

Peluso P, Mamane V, Aubert E, Dessì A, Dallocchio R, Dore A, Pale P, Cossu S.

J Chromatogr A. 2016 Oct 7;1467:228-238. doi: 10.1016/j.chroma.2016.06.007. Epub 2016 Jun 3.

PMID:
27328882
20.

Chiral Hexahalogenated 4,4'-Bipyridines.

Mamane V, Peluso P, Aubert E, Cossu S, Pale P.

J Org Chem. 2016 Jun 3;81(11):4576-87. doi: 10.1021/acs.joc.6b00413. Epub 2016 May 17.

PMID:
27149320
21.

Liquid chromatography enantioseparations of halogenated compounds on polysaccharide-based chiral stationary phases: role of halogen substituents in molecular recognition.

Peluso P, Mamane V, Cossu S.

Chirality. 2015 Oct;27(10):667-84. doi: 10.1002/chir.22485. Epub 2015 Aug 3. Review.

PMID:
26237113
22.

Homochiral metal-organic frameworks and their application in chromatography enantioseparations.

Peluso P, Mamane V, Cossu S.

J Chromatogr A. 2014 Oct 10;1363:11-26. doi: 10.1016/j.chroma.2014.06.064. Epub 2014 Jun 25. Review.

PMID:
25001329
23.

High-performance liquid chromatography enantioseparation of polyhalogenated 4,4'-bipyridines on polysaccharide-based chiral stationary phases under multimodal elution.

Peluso P, Mamane V, Aubert E, Cossu S.

J Sep Sci. 2014 Sep;37(18):2481-9. doi: 10.1002/jssc.201400413. Epub 2014 Jul 30.

PMID:
24963550
24.
25.

Long-read, whole-genome shotgun sequence data for five model organisms.

Kim KE, Peluso P, Babayan P, Yeadon PJ, Yu C, Fisher WW, Chin CS, Rapicavoli NA, Rank DR, Li J, Catcheside DE, Celniker SE, Phillippy AM, Bergman CM, Landolin JM.

Sci Data. 2014 Nov 25;1:140045. doi: 10.1038/sdata.2014.45. eCollection 2014.

26.
27.

Lithiation of prochiral 2,2'-dichloro-5,5'-dibromo-4,4'-bipyridine as a tool for the synthesis of chiral polyhalogenated 4,4'-bipyridines.

Mamane V, Aubert E, Peluso P, Cossu S.

J Org Chem. 2013 Aug 2;78(15):7683-9. doi: 10.1021/jo401255q. Epub 2013 Jul 24.

PMID:
23837459
28.

Optimization of the HPLC enantioseparation of 3,3'-dibromo-5,5'-disubstituted-4,4'-bipyridines using immobilized polysaccharide-based chiral stationary phases.

Peluso P, Mamane V, Aubert E, Cossu S.

J Sep Sci. 2013 Sep;36(18):2993-3003. doi: 10.1002/jssc.201300576.

PMID:
23825012
29.

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.

Genome Biol. 2013 Jan 30;14(1):R10. doi: 10.1186/gb-2013-14-1-r10.

30.

Sequencing the unsequenceable: expanded CGG-repeat alleles of the fragile X gene.

Loomis EW, Eid JS, Peluso P, Yin J, Hickey L, Rank D, McCalmon S, Hagerman RJ, Tassone F, Hagerman PJ.

Genome Res. 2013 Jan;23(1):121-8. doi: 10.1101/gr.141705.112. Epub 2012 Oct 11.

31.

High-performance liquid chromatography enantioseparation of atropisomeric 4,4'-bipyridines on polysaccharide-type chiral stationary phases: Impact of substituents and electronic properties.

Peluso P, Mamane V, Aubert E, Cossu S.

J Chromatogr A. 2012 Aug 17;1251:91-100. doi: 10.1016/j.chroma.2012.06.035. Epub 2012 Jun 20.

PMID:
22771066
32.

A hybrid approach for the automated finishing of bacterial genomes.

Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE.

Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288.

33.

Synthesis, resolution, and absolute configuration of chiral 4,4'-bipyridines.

Mamane V, Aubert E, Peluso P, Cossu S.

J Org Chem. 2012 Mar 16;77(6):2579-83. doi: 10.1021/jo300286z. Epub 2012 Mar 1.

PMID:
22372669
34.

A mathematical model of psychotherapy: an investigation using dynamic non-linear equations to model the therapeutic relationship.

Peluso PR, Liebovitch LS, Gottman JM, Norman MD, Su J.

Psychother Res. 2012;22(1):40-55. doi: 10.1080/10503307.2011.622314. Epub 2011 Nov 17.

PMID:
22087547
35.

Mathematical model of the dynamics of psychotherapy.

Liebovitch LS, Peluso PR, Norman MD, Su J, Gottman JM.

Cogn Neurodyn. 2011 Sep;5(3):265-75. doi: 10.1007/s11571-011-9157-x. Epub 2011 May 22.

36.

DHS working toward multi-band radios. Agencies will be able to communicate seamlessly across bands.

Peluso P.

EMS World. 2011 Aug;40(8):54-5. No abstract available.

PMID:
21877482
37.

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.

Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK.

N Engl J Med. 2011 Aug 25;365(8):709-17. doi: 10.1056/NEJMoa1106920. Epub 2011 Jul 27.

38.

The origin of the Haitian cholera outbreak strain.

Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, Yamaichi Y, Calderwood SB, Mekalanos JJ, Schadt EE, Waldor MK.

N Engl J Med. 2011 Jan 6;364(1):33-42. doi: 10.1056/NEJMoa1012928. Epub 2010 Dec 9.

39.

Real-time DNA sequencing from single polymerase molecules.

Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S.

Science. 2009 Jan 2;323(5910):133-8. doi: 10.1126/science.1162986. Epub 2008 Nov 20.

40.

Long, processive enzymatic DNA synthesis using 100% dye-labeled terminal phosphate-linked nucleotides.

Korlach J, Bibillo A, Wegener J, Peluso P, Pham TT, Park I, Clark S, Otto GA, Turner SW.

Nucleosides Nucleotides Nucleic Acids. 2008 Sep;27(9):1072-83. doi: 10.1080/15257770802260741.

41.

High performance liquid chromatographic enantioseparation of chiral bridged polycyclic compounds on chiralcel OD-H and chiralpak OT(+).

Peluso P, Cossu S, Moretto F, Marchetti M.

Chirality. 2009 May;21(5):507-18. doi: 10.1002/chir.20629.

PMID:
18655168
42.

Parallel confocal detection of single molecules in real time.

Lundquist PM, Zhong CF, Zhao P, Tomaney AB, Peluso PS, Dixon J, Bettman B, Lacroix Y, Kwo DP, McCullough E, Maxham M, Hester K, McNitt P, Grey DM, Henriquez C, Foquet M, Turner SW, Zaccarin D.

Opt Lett. 2008 May 1;33(9):1026-8.

PMID:
18451975
43.

Optimizing antibody immobilization strategies for the construction of protein microarrays.

Peluso P, Wilson DS, Do D, Tran H, Venkatasubbaiah M, Quincy D, Heidecker B, Poindexter K, Tolani N, Phelan M, Witte K, Jung LS, Wagner P, Nock S.

Anal Biochem. 2003 Jan 15;312(2):113-24.

PMID:
12531195
45.

Improved method for pepsinolysis of mouse IgG(1) molecules to F(ab')(2) fragments.

Wilson DS, Wu J, Peluso P, Nock S.

J Immunol Methods. 2002 Feb 1;260(1-2):29-36.

PMID:
11792373
46.

Role of SRP RNA in the GTPase cycles of Ffh and FtsY.

Peluso P, Shan SO, Nock S, Herschlag D, Walter P.

Biochemistry. 2001 Dec 18;40(50):15224-33.

PMID:
11735405
47.

Enantiomeric Discrimination in a Reiterative Domino Coupling Process: CuI -mediated Syn Cyclotrimerization of Racemic Polycyclic Trimethylstannyl Bromonorbornadienes.

Cossu S, Cimenti C, Peluso P, Paulon A, De Lucchi O.

Angew Chem Int Ed Engl. 2001 Nov 5;40(21):4086-4089. doi: 10.1002/1521-3773(20011105)40:21<4086::AID-ANIE4086>3.0.CO;2-5.

PMID:
29712266
48.

Role of 4.5S RNA in assembly of the bacterial signal recognition particle with its receptor.

Peluso P, Herschlag D, Nock S, Freymann DM, Johnson AE, Walter P.

Science. 2000 Jun 2;288(5471):1640-3.

49.

Asthma to carob bean flour.

Scoditti A, Peluso P, Pezzuto R, Giordano T, Melica A.

Ann Allergy Asthma Immunol. 1996 Jul;77(1):81. No abstract available.

PMID:
8705642
50.

The bulk of unpolymerized actin in Xenopus egg extracts is ATP-bound.

Rosenblatt J, Peluso P, Mitchison TJ.

Mol Biol Cell. 1995 Feb;6(2):227-36.

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