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Items: 1 to 50 of 73

1.

Experimental warming alters the community composition, diversity, and N2 fixation activity of peat moss (Sphagnum fallax) microbiomes.

Carrell AA, Kolton M, Glass JB, Pelletier DA, Warren MJ, Kostka JE, Iversen CM, Hanson PJ, Weston DJ.

Glob Chang Biol. 2019 Sep;25(9):2993-3004. doi: 10.1111/gcb.14715. Epub 2019 Jul 2.

PMID:
31148286
2.

Mercury Uptake by Desulfovibrio desulfuricans ND132: Passive or Active?

An J, Zhang L, Lu X, Pelletier DA, Pierce EM, Johs A, Parks JM, Gu B.

Environ Sci Technol. 2019 Jun 4;53(11):6264-6272. doi: 10.1021/acs.est.9b00047. Epub 2019 May 16.

PMID:
31075193
3.

Chryseobacterium populi sp. nov., isolated from Populus deltoides endosphere.

Bortniak VL, Pelletier DA, Newman JD.

Int J Syst Evol Microbiol. 2019 Feb;69(2):356-362. doi: 10.1099/ijsem.0.003140. Epub 2018 Dec 20.

PMID:
30570477
4.

Exploration of the Biosynthetic Potential of the Populus Microbiome.

Blair PM, Land ML, Piatek MJ, Jacobson DA, Lu TS, Doktycz MJ, Pelletier DA.

mSystems. 2018 Oct 2;3(5). pii: e00045-18. doi: 10.1128/mSystems.00045-18. eCollection 2018 Sep-Oct.

5.

Diversity of Active Viral Infections within the Sphagnum Microbiome.

Stough JMA, Kolton M, Kostka JE, Weston DJ, Pelletier DA, Wilhelm SW.

Appl Environ Microbiol. 2018 Nov 15;84(23). pii: e01124-18. doi: 10.1128/AEM.01124-18. Print 2018 Dec 1.

6.

A plant-responsive bacterial-signaling system senses an ethanolamine derivative.

Coutinho BG, Mevers E, Schaefer AL, Pelletier DA, Harwood CS, Clardy J, Greenberg EP.

Proc Natl Acad Sci U S A. 2018 Sep 25;115(39):9785-9790. doi: 10.1073/pnas.1809611115. Epub 2018 Sep 6.

7.

Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope.

Hasim S, Allison DP, Mendez B, Farmer AT, Pelletier DA, Retterer ST, Campagna SR, Reynolds TB, Doktycz MJ.

Front Microbiol. 2018 Feb 14;9:219. doi: 10.3389/fmicb.2018.00219. eCollection 2018.

8.

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome.

Timm CM, Carter KR, Carrell AA, Jun SR, Jawdy SS, Vélez JM, Gunter LE, Yang Z, Nookaew I, Engle NL, Lu TS, Schadt CW, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Pelletier DA, Weston DJ.

mSystems. 2018 Jan 23;3(1). pii: e00070-17. doi: 10.1128/mSystems.00070-17. eCollection 2018 Jan-Feb.

9.

Genomic features of bacterial adaptation to plants.

Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, McDonald M, Klein AP, Feltcher ME, Rio TG, Grant SR, Doty SL, Ley RE, Zhao B, Venturi V, Pelletier DA, Vorholt JA, Tringe SG, Woyke T, Dangl JL.

Nat Genet. 2017 Dec 18;50(1):138-150. doi: 10.1038/s41588-017-0012-9.

10.

Root and Rhizosphere Bacterial Phosphatase Activity Varies with Tree Species and Soil Phosphorus Availability in Puerto Rico Tropical Forest.

Cabugao KG, Timm CM, Carrell AA, Childs J, Lu TS, Pelletier DA, Weston DJ, Norby RJ.

Front Plant Sci. 2017 Oct 30;8:1834. doi: 10.3389/fpls.2017.01834. eCollection 2017.

11.

Root bacterial endophytes alter plant phenotype, but not physiology.

Henning JA, Weston DJ, Pelletier DA, Timm CM, Jawdy SS, Classen AT.

PeerJ. 2016 Nov 1;4:e2606. eCollection 2016.

12.

A LuxR Homolog in a Cottonwood Tree Endophyte That Activates Gene Expression in Response to a Plant Signal or Specific Peptides.

Schaefer AL, Oda Y, Coutinho BG, Pelletier DA, Weiburg J, Venturi V, Greenberg EP, Harwood CS.

MBio. 2016 Aug 2;7(4). pii: e01101-16. doi: 10.1128/mBio.01101-16.

13.

Correction: Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development.

Hansen RR, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST.

PLoS One. 2016 Jul 21;11(7):e0160135. doi: 10.1371/journal.pone.0160135. eCollection 2016.

14.

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

Utturkar SM, Cude WN, Robeson MS Jr, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TY, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA.

Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708. doi: 10.1128/AEM.01285-16. Print 2016 Sep 15.

15.

Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets.

Manga P, Klingeman DM, Lu TY, Mehlhorn TL, Pelletier DA, Hauser LJ, Wilson CM, Brown SD.

Front Microbiol. 2016 May 31;7:794. doi: 10.3389/fmicb.2016.00794. eCollection 2016.

16.

Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.

Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ.

Front Plant Sci. 2016 Apr 26;7:497. doi: 10.3389/fpls.2016.00497. eCollection 2016.

17.

Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development.

Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST.

PLoS One. 2016 May 6;11(5):e0155080. doi: 10.1371/journal.pone.0155080. eCollection 2016. Erratum in: PLoS One. 2016;11(7):e0160135.

18.

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.

Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL.

Front Microbiol. 2016 Apr 18;7:491. doi: 10.3389/fmicb.2016.00491. eCollection 2016.

19.

Microstencils to generate defined, multi-species patterns of bacteria.

Timm CM, Hansen RR, Doktycz MJ, Retterer ST, Pelletier DA.

Biomicrofluidics. 2015 Nov 12;9(6):064103. doi: 10.1063/1.4935938. eCollection 2015 Nov.

20.

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere.

Klingeman DM, Utturkar S, Lu TY, Schadt CW, Pelletier DA, Brown SD.

Genome Announc. 2015 Nov 12;3(6). pii: e01344-15. doi: 10.1128/genomeA.01344-15.

21.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.

Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.

Front Microbiol. 2015 Oct 14;6:1118. doi: 10.3389/fmicb.2015.01118. eCollection 2015.

22.

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis.

Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm CM, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW.

Appl Environ Microbiol. 2015 Oct 30;82(1):375-83. doi: 10.1128/AEM.02612-15. Print 2016 Jan 1.

23.

Rhodopseudomonas palustris CGA010 Proteome Implicates Extracytoplasmic Function Sigma Factor in Stress Response.

Allen MS, Hurst GB, Lu TY, Perry LM, Pan C, Lankford PK, Pelletier DA.

J Proteome Res. 2015 May 1;14(5):2158-68. doi: 10.1021/pr5012558. Epub 2015 Apr 8.

PMID:
25853567
24.

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus.

Labbé JL, Weston DJ, Dunkirk N, Pelletier DA, Tuskan GA.

Front Plant Sci. 2014 Oct 24;5:579. doi: 10.3389/fpls.2014.00579. eCollection 2014.

25.

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.

Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD.

Bioinformatics. 2014 Oct;30(19):2709-16. doi: 10.1093/bioinformatics/btu391. Epub 2014 Jun 14.

26.

Atomic force microscope controlled topographical imaging and proximal probe thermal desorption/ionization mass spectrometry imaging.

Ovchinnikova OS, Kjoller K, Hurst GB, Pelletier DA, Van Berkel GJ.

Anal Chem. 2014 Jan 21;86(2):1083-90. doi: 10.1021/ac4026576. Epub 2013 Dec 30.

PMID:
24377265
27.

Lectin-functionalized poly(glycidyl methacrylate)-block-poly(vinyldimethyl azlactone) surface scaffolds for high avidity microbial capture.

Hansen RR, Hinestrosa JP, Shubert KR, Morrell-Falvey JL, Pelletier DA, Messman JM, Kilbey SM 2nd, Lokitz BS, Retterer ST.

Biomacromolecules. 2013 Oct 14;14(10):3742-8. doi: 10.1021/bm4011358. Epub 2013 Sep 25.

PMID:
24003861
28.

LuxR- and luxI-type quorum-sensing circuits are prevalent in members of the Populus deltoides microbiome.

Schaefer AL, Lappala CR, Morlen RP, Pelletier DA, Lu TY, Lankford PK, Harwood CS, Greenberg EP.

Appl Environ Microbiol. 2013 Sep;79(18):5745-52. doi: 10.1128/AEM.01417-13. Epub 2013 Jul 12.

29.

Relating nanomaterial properties and microbial toxicity.

Suresh AK, Pelletier DA, Doktycz MJ.

Nanoscale. 2013 Jan 21;5(2):463-74. doi: 10.1039/c2nr32447d. Epub 2012 Dec 3. Review.

PMID:
23203029
30.

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA.

J Bacteriol. 2012 Nov;194(21):5991-3. doi: 10.1128/JB.01243-12.

31.

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA.

J Bacteriol. 2012 May;194(9):2383-4. doi: 10.1128/JB.00198-12.

32.

System-wide studies of N-lysine acetylation in Rhodopseudomonas palustris reveal substrate specificity of protein acetyltransferases.

Crosby HA, Pelletier DA, Hurst GB, Escalante-Semerena JC.

J Biol Chem. 2012 May 4;287(19):15590-601. doi: 10.1074/jbc.M112.352104. Epub 2012 Mar 13.

33.

Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA.

Mol Plant Microbe Interact. 2012 Jun;25(6):765-78. doi: 10.1094/MPMI-09-11-0253.

34.

Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types.

Suresh AK, Pelletier DA, Wang W, Morrell-Falvey JL, Gu B, Doktycz MJ.

Langmuir. 2012 Feb 7;28(5):2727-35. doi: 10.1021/la2042058. Epub 2012 Jan 23.

PMID:
22216981
35.

Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis.

Suresh AK, Doktycz MJ, Wang W, Moon JW, Gu B, Meyer HM 3rd, Hensley DK, Allison DP, Phelps TJ, Pelletier DA.

Acta Biomater. 2011 Dec;7(12):4253-8. doi: 10.1016/j.actbio.2011.07.007. Epub 2011 Jul 14.

PMID:
21798382
36.

Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.

Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW.

Appl Environ Microbiol. 2011 Sep;77(17):5934-44. doi: 10.1128/AEM.05255-11. Epub 2011 Jul 15.

37.

Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis.

Suresh AK, Pelletier DA, Wang W, Broich ML, Moon JW, Gu B, Allison DP, Joy DC, Phelps TJ, Doktycz MJ.

Acta Biomater. 2011 May;7(5):2148-52. doi: 10.1016/j.actbio.2011.01.023. Epub 2011 Jan 15.

PMID:
21241833
38.

Effects of engineered cerium oxide nanoparticles on bacterial growth and viability.

Pelletier DA, Suresh AK, Holton GA, McKeown CK, Wang W, Gu B, Mortensen NP, Allison DP, Joy DC, Allison MR, Brown SD, Phelps TJ, Doktycz MJ.

Appl Environ Microbiol. 2010 Dec;76(24):7981-9. doi: 10.1128/AEM.00650-10. Epub 2010 Oct 15.

39.

Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria.

Suresh AK, Pelletier DA, Wang W, Moon JW, Gu B, Mortensen NP, Allison DP, Joy DC, Phelps TJ, Doktycz MJ.

Environ Sci Technol. 2010 Jul 1;44(13):5210-5. doi: 10.1021/es903684r.

PMID:
20509652
40.

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae.

Yang S, Land ML, Klingeman DM, Pelletier DA, Lu TY, Martin SL, Guo HB, Smith JC, Brown SD.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10395-400. doi: 10.1073/pnas.0914506107. Epub 2010 May 19.

41.

The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors.

Yang S, Pelletier DA, Lu TY, Brown SD.

BMC Microbiol. 2010 May 7;10:135. doi: 10.1186/1471-2180-10-135.

42.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
43.

Improved genome annotation for Zymomonas mobilis.

Yang S, Pappas KM, Hauser LJ, Land ML, Chen GL, Hurst GB, Pan C, Kouvelis VN, Typas MA, Pelletier DA, Klingeman DM, Chang YJ, Samatova NF, Brown SD.

Nat Biotechnol. 2009 Oct;27(10):893-4. doi: 10.1038/nbt1009-893. No abstract available.

PMID:
19816441
44.

Shotgun proteome profile of Populus developing xylem.

Kalluri UC, Hurst GB, Lankford PK, Ranjan P, Pelletier DA.

Proteomics. 2009 Nov;9(21):4871-80. doi: 10.1002/pmic.200800854.

PMID:
19743414
45.

An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.

Edwards AN, Fowlkes JD, Owens ET, Standaert RF, Pelletier DA, Hurst GB, Doktycz MJ, Morrell-Falvey JL.

Anal Biochem. 2009 Dec 15;395(2):166-77. doi: 10.1016/j.ab.2009.08.015. Epub 2009 Aug 19.

PMID:
19698693
46.

A multidisciplinary approach to reducing door-to-balloon time in a community hospital.

Pelletier DA.

Crit Care Nurse. 2009 Jun;29(3):54-65. doi: 10.4037/ccn2009216. No abstract available.

47.

Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.

Hervey WJ 4th, Khalsa-Moyers G, Lankford PK, Owens ET, McKeown CK, Lu TY, Foote LJ, Asano KG, Morrell-Falvey JL, McDonald WH, Pelletier DA, Hurst GB.

J Proteome Res. 2009 Jul;8(7):3675-88. doi: 10.1021/pr801088f.

PMID:
19459691
48.

Phenotype fingerprinting suggests the involvement of single-genotype consortia in degradation of aromatic compounds by Rhodopseudomonas palustris.

Karpinets TV, Pelletier DA, Pan C, Uberbacher EC, Melnichenko GV, Hettich RL, Samatova NF.

PLoS One. 2009;4(2):e4615. doi: 10.1371/journal.pone.0004615. Epub 2009 Feb 26.

49.

Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments.

Oda Y, Larimer FW, Chain PS, Malfatti S, Shin MV, Vergez LM, Hauser L, Land ML, Braatsch S, Beatty JT, Pelletier DA, Schaefer AL, Harwood CS.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18543-8. doi: 10.1073/pnas.0809160105. Epub 2008 Nov 19.

50.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ 4th, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, Auberry DL, Wang Y, Larimer FW, Kennel SJ, Doktycz MJ, Morrell-Falvey JL, Owens ET, Buchanan MV.

J Proteome Res. 2008 Aug;7(8):3319-28. doi: 10.1021/pr8001832. Epub 2008 Jul 1.

PMID:
18590317

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