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Agent-based model illustrates the role of the microenvironment in regeneration in healthy and mdx skeletal muscle.

Virgilio KM, Martin KS, Peirce SM, Blemker SS.

J Appl Physiol (1985). 2018 Aug 2. doi: 10.1152/japplphysiol.00379.2018. [Epub ahead of print]


CIRCOAST: A Statistical Hypothesis Test for Cellular Colocalization with Network Structures.

Corliss BA, Ray HC, Patrie J, Mansour J, Kesting S, Park J, Rohde G, Yates PA, Janes K, Peirce SM.

Bioinformatics. 2018 Jul 19. doi: 10.1093/bioinformatics/bty638. [Epub ahead of print]


Design and implementation of a student-taught course on research in regenerative medicine.

Tavakol DN, Broshkevitch CJ, Guilford WH, Peirce SM.

Adv Physiol Educ. 2018 Jun 1;42(2):360-367. doi: 10.1152/advan.00157.2017.


Klf4 has an unexpected protective role in perivascular cells within the microvasculature.

Haskins RM, Nguyen AT, Alencar GF, Billaud M, Kelly-Goss MR, Good ME, Bottermann K, Klibanov AL, French BA, Harris TE, Peirce SM, Isakson BE, Owens GK.

Am J Physiol Heart Circ Physiol. 2018 Aug 1;315(2):H402-H414. doi: 10.1152/ajpheart.00084.2018. Epub 2018 Apr 6.


Effect of Adipose-Derived Stem Cells on Head and Neck Squamous Cell Carcinoma.

Danan D, Lehman CE, Mendez RE, Langford B, Koors PD, Dougherty MI, Peirce SM, Gioeli DG, Jameson MJ.

Otolaryngol Head Neck Surg. 2018 May;158(5):882-888. doi: 10.1177/0194599817750361. Epub 2018 Jan 9.


Mechanotransduction in Blood and Lymphatic Vascular Development and Disease.

Urner S, Kelly-Goss M, Peirce SM, Lammert E.

Adv Pharmacol. 2018;81:155-208. doi: 10.1016/bs.apha.2017.08.009. Epub 2017 Nov 10.


Metallothionein I as a direct link between therapeutic hematopoietic stem/progenitor cells and cerebral protection in stroke.

Smith HK, Omura S, Vital SA, Becker F, Senchenkova EY, Kaur G, Tsunoda I, Peirce SM, Gavins FNE.

FASEB J. 2018 May;32(5):2381-2394. doi: 10.1096/fj.201700746R. Epub 2017 Dec 21.


Muscle-derived extracellular superoxide dismutase inhibits endothelial activation and protects against multiple organ dysfunction syndrome in mice.

Call JA, Donet J, Martin KS, Sharma AK, Chen X, Zhang J, Cai J, Galarreta CA, Okutsu M, Du Z, Lira VA, Zhang M, Mehrad B, Annex BH, Klibanov AL, Bowler RP, Laubach VE, Peirce SM, Yan Z.

Free Radic Biol Med. 2017 Dec;113:212-223. doi: 10.1016/j.freeradbiomed.2017.09.029. Epub 2017 Oct 2.


Spatial and age-related changes in the microstructure of dystrophic and healthy diaphragms.

Henry CC, Martin KS, Ward BB, Handsfield GG, Peirce SM, Blemker SS.

PLoS One. 2017 Sep 6;12(9):e0183853. doi: 10.1371/journal.pone.0183853. eCollection 2017.


Dynamic, heterogeneous endothelial Tie2 expression and capillary blood flow during microvascular remodeling.

Kelly-Goss MR, Ning B, Bruce AC, Tavakol DN, Yi D, Hu S, Yates PA, Peirce SM.

Sci Rep. 2017 Aug 22;7(1):9049. doi: 10.1038/s41598-017-08982-z.


Agent-based computational model of retinal angiogenesis simulates microvascular network morphology as a function of pericyte coverage.

Walpole J, Mac Gabhann F, Peirce SM, Chappell JC.

Microcirculation. 2017 Nov;24(8). doi: 10.1111/micc.12393.


An engineering design approach to systems biology.

Janes KA, Chandran PL, Ford RM, Lazzara MJ, Papin JA, Peirce SM, Saucerman JJ, Lauffenburger DA.

Integr Biol (Camb). 2017 Jul 17;9(7):574-583. doi: 10.1039/c7ib00014f. Review.


Effects of Collagenase Digestion and Stromal Vascular Fraction Supplementation on Volume Retention of Fat Grafts.

Olenczak JB, Seaman SA, Lin KY, Pineros-Fernandez A, Davis CE, Salopek LS, Peirce SM, Cottler PS.

Ann Plast Surg. 2017 Jun;78(6S Suppl 5):S335-S342. doi: 10.1097/SAP.0000000000001063.


Microfluidics Technologies and Approaches for Studying the Microcirculation.

Murfee WL, Peirce SM.

Microcirculation. 2017 Jul;24(5). doi: 10.1111/micc.12377.


Non-classical monocytes are biased progenitors of wound healing macrophages during soft tissue injury.

Olingy CE, San Emeterio CL, Ogle ME, Krieger JR, Bruce AC, Pfau DD, Jordan BT, Peirce SM, Botchwey EA.

Sci Rep. 2017 Mar 27;7(1):447. doi: 10.1038/s41598-017-00477-1.


Oxygen Sensing Difluoroboron β-Diketonate Polylactide Materials with Tunable Dynamic Ranges for Wound Imaging.

DeRosa CA, Seaman SA, Mathew AS, Gorick CM, Fan Z, Demas JN, Peirce SM, Fraser CL.

ACS Sens. 2016 Nov 23;1(11):1366-1373. doi: 10.1021/acssensors.6b00533. Epub 2016 Nov 14.


Arteriogenesis in murine adipose tissue is contingent on CD68+ /CD206+ macrophages.

Seaman SA, Cao Y, Campbell CA, Peirce SM.

Microcirculation. 2017 May;24(4). doi: 10.1111/micc.12341.


Computational Modeling of Muscle Regeneration and Adaptation to Advance Muscle Tissue Regeneration Strategies.

Martin KS, Virgilio KM, Peirce SM, Blemker SS.

Cells Tissues Organs. 2016;202(3-4):250-266. Epub 2016 Nov 9. Review.


Modulating Vascular Hemodynamics With an Alpha Globin Mimetic Peptide (HbαX).

Keller TC 4th, Butcher JT, Broseghini-Filho GB, Marziano C, DeLalio LJ, Rogers S, Ning B, Martin JN, Chechova S, Cabot M, Shu X, Best AK, Good ME, Simão Padilha A, Purdy M, Yeager M, Peirce SM, Hu S, Doctor A, Barrett E, Le TH, Columbus L, Isakson BE.

Hypertension. 2016 Dec;68(6):1494-1503. Epub 2016 Oct 31.


Interstitial flow differentially increases patient-derived glioblastoma stem cell invasion via CXCR4, CXCL12, and CD44-mediated mechanisms.

Kingsmore KM, Logsdon DK, Floyd DH, Peirce SM, Purow BW, Munson JM.

Integr Biol (Camb). 2016 Dec 5;8(12):1246-1260.


In Silico and In Vivo Experiments Reveal M-CSF Injections Accelerate Regeneration Following Muscle Laceration.

Martin KS, Kegelman CD, Virgilio KM, Passipieri JA, Christ GJ, Blemker SS, Peirce SM.

Ann Biomed Eng. 2017 Mar;45(3):747-760. doi: 10.1007/s10439-016-1707-2. Epub 2016 Oct 7.


Preclinical Assessment of Safety and Efficacy of Fluorescent Dye for Detecting Dermal Injuries (the injuries were both abrasions and incision) in a Murine Model.

Bruce AC, Cao Y, Henry C, Peirce SM, Laughon K.

J Forensic Sci. 2016 Nov;61(6):1493-1497. doi: 10.1111/1556-4029.13173. Epub 2016 Aug 8.


Flt-1 (VEGFR-1) coordinates discrete stages of blood vessel formation.

Chappell JC, Cluceru JG, Nesmith JE, Mouillesseaux KP, Bradley VB, Hartland CM, Hashambhoy-Ramsay YL, Walpole J, Peirce SM, Mac Gabhann F, Bautch VL.

Cardiovasc Res. 2016 Jul 1;111(1):84-93. doi: 10.1093/cvr/cvw091. Epub 2016 May 3.


Macrophage Recruitment and Polarization During Collateral Vessel Remodeling in Murine Adipose Tissue.

Seaman SA, Cao Y, Campbell CA, Peirce SM.

Microcirculation. 2016 Jan;23(1):75-87. doi: 10.1111/micc.12261.


Macrophages: An Inflammatory Link Between Angiogenesis and Lymphangiogenesis.

Corliss BA, Azimi MS, Munson JM, Peirce SM, Murfee WL.

Microcirculation. 2016 Feb;23(2):95-121. doi: 10.1111/micc.12259. Review.


Paradoxical Adipose Hyperplasia and Cellular Effects After Cryolipolysis: A Case Report.

Seaman SA, Tannan SC, Cao Y, Peirce SM, Gampper TJ.

Aesthet Surg J. 2016 Jan;36(1):NP6-13. doi: 10.1093/asj/sjv105. Epub 2015 Nov 20.


Differential Effects of Processing Time and Duration of Collagenase Digestion on Human and Murine Fat Grafts.

Seaman SA, Tannan SC, Cao Y, Peirce SM, Lin KY.

Plast Reconstr Surg. 2015 Aug;136(2):189e-199e. doi: 10.1097/PRS.0000000000001446.


Agent-based model of angiogenesis simulates capillary sprout initiation in multicellular networks.

Walpole J, Chappell JC, Cluceru JG, Mac Gabhann F, Bautch VL, Peirce SM.

Integr Biol (Camb). 2015 Sep;7(9):987-97. doi: 10.1039/c5ib00024f. Epub 2015 Jul 9.


Computational Network Model Prediction of Hemodynamic Alterations Due to Arteriolar Rarefaction and Estimation of Skeletal Muscle Perfusion in Peripheral Arterial Disease.

Heuslein JL, Li X, Murrell KP, Annex BH, Peirce SM, Price RJ.

Microcirculation. 2015 Jul;22(5):360-9. doi: 10.1111/micc.12203.


Multiscale models of skeletal muscle reveal the complex effects of muscular dystrophy on tissue mechanics and damage susceptibility.

Virgilio KM, Martin KS, Peirce SM, Blemker SS.

Interface Focus. 2015 Apr 6;5(2):20140080. doi: 10.1098/rsfs.2014.0080.


Applications of computational models to better understand microvascular remodelling: a focus on biomechanical integration across scales.

Murfee WL, Sweat RS, Tsubota K, Mac Gabhann F, Khismatullin D, Peirce SM.

Interface Focus. 2015 Apr 6;5(2):20140077. doi: 10.1098/rsfs.2014.0077. Review.


Adipose-derived stem cells from diabetic mice show impaired vascular stabilization in a murine model of diabetic retinopathy.

Cronk SM, Kelly-Goss MR, Ray HC, Mendel TA, Hoehn KL, Bruce AC, Dey BK, Guendel AM, Tavakol DN, Herman IM, Peirce SM, Yates PA.

Stem Cells Transl Med. 2015 May;4(5):459-67. doi: 10.5966/sctm.2014-0108. Epub 2015 Mar 13.


Agent-based computational model investigates muscle-specific responses to disuse-induced atrophy.

Martin KS, Blemker SS, Peirce SM.

J Appl Physiol (1985). 2015 May 15;118(10):1299-309. doi: 10.1152/japplphysiol.01150.2014. Epub 2015 Feb 26.


Human adipose-derived stromal/stem cells demonstrate short-lived persistence after implantation in both an immunocompetent and an immunocompromised murine model.

Agrawal H, Shang H, Sattah AP, Yang N, Peirce SM, Katz AJ.

Stem Cell Res Ther. 2014 Dec 18;5(6):142. doi: 10.1186/scrt532.


Monocytes are recruited from venules during arteriogenesis in the murine spinotrapezius ligation model.

Bruce AC, Kelly-Goss MR, Heuslein JL, Meisner JK, Price RJ, Peirce SM.

Arterioscler Thromb Vasc Biol. 2014 Sep;34(9):2012-22. doi: 10.1161/ATVBAHA.114.303399. Epub 2014 Jun 26.


Targeting pericytes for angiogenic therapies.

Kelly-Goss MR, Sweat RS, Stapor PC, Peirce SM, Murfee WL.

Microcirculation. 2014 May;21(4):345-57. doi: 10.1111/micc.12107. Review.


Pericytes derived from adipose-derived stem cells protect against retinal vasculopathy.

Mendel TA, Clabough EB, Kao DS, Demidova-Rice TN, Durham JT, Zotter BC, Seaman SA, Cronk SM, Rakoczy EP, Katz AJ, Herman IM, Peirce SM, Yates PA.

PLoS One. 2013 May 31;8(5):e65691. doi: 10.1371/journal.pone.0065691. Print 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/679017bf-abd5-44ce-9e20-5e7af1cd3468.


Multiscale computational models of complex biological systems.

Walpole J, Papin JA, Peirce SM.

Annu Rev Biomed Eng. 2013;15:137-54. doi: 10.1146/annurev-bioeng-071811-150104. Epub 2013 Apr 29. Review.


Murine spinotrapezius model to assess the impact of arteriolar ligation on microvascular function and remodeling.

Guendel AM, Martin KS, Cutts J, Foley PL, Bailey AM, Mac Gabhann F, Cardinal TR, Peirce SM.

J Vis Exp. 2013 Mar 3;(73):e50218. doi: 10.3791/50218.


Attenuation of ephrinB2 reverse signaling decreases vascularized area and preretinal vascular tuft formation in the murine model of oxygen-induced retinopathy.

Taylor AC, Mendel TA, Mason KE, Degen KE, Yates PA, Peirce SM.

Invest Ophthalmol Vis Sci. 2012 Aug 13;53(9):5462-70. doi: 10.1167/iovs.11-8599.


Rat mesentery exteriorization: a model for investigating the cellular dynamics involved in angiogenesis.

Yang M, Stapor PC, Peirce SM, Betancourt AM, Murfee WL.

J Vis Exp. 2012 May 20;(63):e3954. doi: 10.3791/3954.


Integration of experimental and computational approaches to sprouting angiogenesis.

Peirce SM, Mac Gabhann F, Bautch VL.

Curr Opin Hematol. 2012 May;19(3):184-91. doi: 10.1097/MOH.0b013e3283523ea6. Review.


Computational modeling of interacting VEGF and soluble VEGF receptor concentration gradients.

Hashambhoy YL, Chappell JC, Peirce SM, Bautch VL, Mac Gabhann F.

Front Physiol. 2011 Oct 4;2:62. doi: 10.3389/fphys.2011.00062. eCollection 2011.


Hypoxic culture and in vivo inflammatory environments affect the assumption of pericyte characteristics by human adipose and bone marrow progenitor cells.

Amos PJ, Mulvey CL, Seaman SA, Walpole J, Degen KE, Shang H, Katz AJ, Peirce SM.

Am J Physiol Cell Physiol. 2011 Dec;301(6):C1378-88. doi: 10.1152/ajpcell.00460.2010. Epub 2011 Aug 24.


Ensuring congruency in multiscale modeling: towards linking agent based and continuum biomechanical models of arterial adaptation.

Hayenga HN, Thorne BC, Peirce SM, Humphrey JD.

Ann Biomed Eng. 2011 Nov;39(11):2669-82. doi: 10.1007/s10439-011-0363-9. Epub 2011 Aug 2.


Toward a multi-scale computational model of arterial adaptation in hypertension: verification of a multi-cell agent based model.

Thorne BC, Hayenga HN, Humphrey JD, Peirce SM.

Front Physiol. 2011 May 9;2:20. doi: 10.3389/fphys.2011.00020. eCollection 2011.


Rapid analysis of vessel elements (RAVE): a tool for studying physiologic, pathologic and tumor angiogenesis.

Seaman ME, Peirce SM, Kelly K.

PLoS One. 2011;6(6):e20807. doi: 10.1371/journal.pone.0020807. Epub 2011 Jun 9.


A new method for in vivo visualization of vessel remodeling using a near-infrared dye.

Billaud M, Ross JA, Greyson MA, Bruce AC, Seaman SA, Heberlein KR, Han J, Best AK, Peirce SM, Isakson BE.

Microcirculation. 2011 Apr;18(3):163-71. doi: 10.1111/j.1549-8719.2011.00085.x.


Systems analysis of small signaling modules relevant to eight human diseases.

Benedict KF, Mac Gabhann F, Amanfu RK, Chavali AK, Gianchandani EP, Glaw LS, Oberhardt MA, Thorne BC, Yang JH, Papin JA, Peirce SM, Saucerman JJ, Skalak TC.

Ann Biomed Eng. 2011 Feb;39(2):621-35. doi: 10.1007/s10439-010-0208-y. Epub 2010 Dec 4.

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