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Items: 26

1.

Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer.

Michaut M, Chin SF, Majewski I, Severson TM, Bismeijer T, de Koning L, Peeters JK, Schouten PC, Rueda OM, Bosma AJ, Tarrant F, Fan Y, He B, Xue Z, Mittempergher L, Kluin RJ, Heijmans J, Snel M, Pereira B, Schlicker A, Provenzano E, Ali HR, Gaber A, O'Hurley G, Lehn S, Muris JJ, Wesseling J, Kay E, Sammut SJ, Bardwell HA, Barbet AS, Bard F, Lecerf C, O'Connor DP, Vis DJ, Benes CH, McDermott U, Garnett MJ, Simon IM, Jirström K, Dubois T, Linn SC, Gallagher WM, Wessels LF, Caldas C, Bernards R.

Sci Rep. 2016 Jan 5;6:18517. doi: 10.1038/srep18517.

2.

Integrated genome-wide genotyping and gene expression profiling reveals BCL11B as a putative oncogene in acute myeloid leukemia with 14q32 aberrations.

Abbas S, Sanders MA, Zeilemaker A, Geertsma-Kleinekoort WM, Koenders JE, Kavelaars FG, Abbas ZG, Mahamoud S, Chu IW, Hoogenboezem R, Peeters JK, van Drunen E, van Galen J, Beverloo HB, Löwenberg B, Valk PJ.

Haematologica. 2014 May;99(5):848-57. doi: 10.3324/haematol.2013.095604. Epub 2014 Jan 17.

3.

Loss of E-cadherin is not a necessity for epithelial to mesenchymal transition in human breast cancer.

Hollestelle A, Peeters JK, Smid M, Timmermans M, Verhoog LC, Westenend PJ, Heine AA, Chan A, Sieuwerts AM, Wiemer EA, Klijn JG, van der Spek PJ, Foekens JA, Schutte M, den Bakker MA, Martens JW.

Breast Cancer Res Treat. 2013 Feb;138(1):47-57. doi: 10.1007/s10549-013-2415-3. Epub 2013 Jan 22.

PMID:
23338761
4.

The human GFI136N variant induces epigenetic changes at the Hoxa9 locus and accelerates K-RAS driven myeloproliferative disorder in mice.

Khandanpour C, Krongold J, Schütte J, Bouwman F, Vassen L, Gaudreau MC, Chen R, Calero-Nieto FJ, Diamanti E, Hannah R, Meyer SE, Grimes HL, van der Reijden BA, Jansen JH, Patel CV, Peeters JK, Löwenberg B, Dührsen U, Göttgens B, Möröy T.

Blood. 2012 Nov 8;120(19):4006-17. doi: 10.1182/blood-2011-02-334722. Epub 2012 Aug 28.

5.

Retroviral integration mutagenesis in mice and comparative analysis in human AML identify reduced PTP4A3 expression as a prognostic indicator.

Beekman R, Valkhof M, Erkeland SJ, Taskesen E, Rockova V, Peeters JK, Valk PJ, Löwenberg B, Touw IP.

PLoS One. 2011;6(10):e26537. doi: 10.1371/journal.pone.0026537. Epub 2011 Oct 20.

6.

MicroRNA signatures characterize multiple myeloma patients.

Corthals SL, Sun SM, Kuiper R, de Knegt Y, Broyl A, van der Holt B, Beverloo HB, Peeters JK, el Jarari L, Lokhorst HM, Zweegman S, Jongen-Lavrencic M, Sonneveld P.

Leukemia. 2011 Nov;25(11):1784-9. doi: 10.1038/leu.2011.147. Epub 2011 Jun 24. No abstract available.

PMID:
21701488
7.

Gene expression profiling assigns CHEK2 1100delC breast cancers to the luminal intrinsic subtypes.

Nagel JH, Peeters JK, Smid M, Sieuwerts AM, Wasielewski M, de Weerd V, Trapman-Jansen AM, van den Ouweland A, Brüggenwirth H, van I Jcken WF, Klijn JG, van der Spek PJ, Foekens JA, Martens JW, Schutte M, Meijers-Heijboer H.

Breast Cancer Res Treat. 2012 Apr;132(2):439-48. doi: 10.1007/s10549-011-1588-x. Epub 2011 May 26.

PMID:
21614566
8.

Characterization of CEBPA mutations and promoter hypermethylation in pediatric acute myeloid leukemia.

Hollink IH, van den Heuvel-Eibrink MM, Arentsen-Peters ST, Zimmermann M, Peeters JK, Valk PJ, Balgobind BV, Sonneveld E, Kaspers GJ, de Bont ES, Trka J, Baruchel A, Creutzig U, Pieters R, Reinhardt D, Zwaan CM.

Haematologica. 2011 Mar;96(3):384-92. doi: 10.3324/haematol.2010.031336. Epub 2010 Dec 6.

9.

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.

Figueroa ME, Abdel-Wahab O, Lu C, Ward PS, Patel J, Shih A, Li Y, Bhagwat N, Vasanthakumar A, Fernandez HF, Tallman MS, Sun Z, Wolniak K, Peeters JK, Liu W, Choe SE, Fantin VR, Paietta E, Löwenberg B, Licht JD, Godley LA, Delwel R, Valk PJ, Thompson CB, Levine RL, Melnick A.

Cancer Cell. 2010 Dec 14;18(6):553-67. doi: 10.1016/j.ccr.2010.11.015. Epub 2010 Dec 9.

10.

HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data.

Taskesen E, Beekman R, de Ridder J, Wouters BJ, Peeters JK, Touw IP, Reinders MJ, Delwel R.

BMC Bioinformatics. 2010 May 21;11:275. doi: 10.1186/1471-2105-11-275.

11.

A variant allele of Growth Factor Independence 1 (GFI1) is associated with acute myeloid leukemia.

Khandanpour C, Thiede C, Valk PJ, Sharif-Askari E, Nückel H, Lohmann D, Horsthemke B, Siffert W, Neubauer A, Grzeschik KH, Bloomfield CD, Marcucci G, Maharry K, Slovak ML, van der Reijden BA, Jansen JH, Schackert HK, Afshar K, Schnittger S, Peeters JK, Kroschinsky F, Ehninger G, Lowenberg B, Dührsen U, Möröy T.

Blood. 2010 Mar 25;115(12):2462-72. doi: 10.1182/blood-2009-08-239822. Epub 2010 Jan 14.

12.

Micro-RNA-15a and micro-RNA-16 expression and chromosome 13 deletions in multiple myeloma.

Corthals SL, Jongen-Lavrencic M, de Knegt Y, Peeters JK, Beverloo HB, Lokhorst HM, Sonneveld P.

Leuk Res. 2010 May;34(5):677-81. doi: 10.1016/j.leukres.2009.10.026. Epub 2009 Dec 23.

PMID:
20031211
13.

Distinct gene mutation profiles among luminal-type and basal-type breast cancer cell lines.

Hollestelle A, Nagel JH, Smid M, Lam S, Elstrodt F, Wasielewski M, Ng SS, French PJ, Peeters JK, Rozendaal MJ, Riaz M, Koopman DG, Ten Hagen TL, de Leeuw BH, Zwarthoff EC, Teunisse A, van der Spek PJ, Klijn JG, Dinjens WN, Ethier SP, Clevers H, Jochemsen AG, den Bakker MA, Foekens JA, Martens JW, Schutte M.

Breast Cancer Res Treat. 2010 May;121(1):53-64. doi: 10.1007/s10549-009-0460-8. Epub 2009 Jul 11.

PMID:
19593635
14.

Exon expression arrays as a tool to identify new cancer genes.

Schutte M, Elstrodt F, Bralten LB, Nagel JH, Duijm E, Hollestelle A, Vuerhard MJ, Wasielewski M, Peeters JK, van der Spek P, Sillevis Smitt PA, French PJ.

PLoS One. 2007 Aug 20;3(8):e3007. doi: 10.1371/journal.pone.0003007.

15.

Unusually high prevalence of panton-valentine leukocidin genes among methicillin-sensitive Staphylococcus aureus strains carried in the Indonesian population.

Severin JA, Lestari ES, Kuntaman K, Melles DC, Pastink M, Peeters JK, Snijders SV, Hadi U, Duerink DO, van Belkum A, Verbrugh HA; Antimicrobial Resistance in Indonesia, Prevalence and Prevention Study Group.

J Clin Microbiol. 2008 Jun;46(6):1989-95. doi: 10.1128/JCM.01173-07. Epub 2008 Apr 23.

16.

Methicillin-resistant and -susceptible Staphylococcus aureus sequence type 398 in pigs and humans.

van Belkum A, Melles DC, Peeters JK, van Leeuwen WB, van Duijkeren E, Huijsdens XW, Spalburg E, de Neeling AJ, Verbrugh HA; Dutch Working Party on Surveillance and Research of MRSA-SOM.

Emerg Infect Dis. 2008 Mar;14(3):479-83. doi: 10.3201/eid1403.070760.

17.

Host-microbe interplay in persistent Staphylococcus aureus nasal carriage in HIV patients.

Melles DC, Pauw E, van den Boogaard L, Boelens HA, Peters J, Peeters JK, Witsenboer H, van Leeuwen WB, Verbrugh HA, van Belkum A, Nouwen JL.

Microbes Infect. 2008 Feb;10(2):151-8. doi: 10.1016/j.micinf.2007.10.017. Epub 2007 Nov 9.

PMID:
18248760
18.

Overlapping population structures of nasal isolates of Staphylococcus aureus from healthy Dutch and American individuals.

Melles DC, Tenover FC, Kuehnert MJ, Witsenboer H, Peeters JK, Verbrugh HA, van Belkum A.

J Clin Microbiol. 2008 Jan;46(1):235-41. Epub 2007 Oct 31.

19.

High-resolution genome profiling differentiated Staphylococcus epidermidis isolated from patients with ocular infections and normal individuals.

Duggirala A, Kenchappa P, Sharma S, Peeters JK, Ahmed N, Garg P, Das T, Hasnain SE.

Invest Ophthalmol Vis Sci. 2007 Jul;48(7):3239-45.

PMID:
17591894
20.

Comparison of multilocus sequence typing (MLST), pulsed-field gel electrophoresis (PFGE), and amplified fragment length polymorphism (AFLP) for genetic typing of Staphylococcus aureus.

Melles DC, van Leeuwen WB, Snijders SV, Horst-Kreft D, Peeters JK, Verbrugh HA, van Belkum A.

J Microbiol Methods. 2007 May;69(2):371-5. Epub 2007 Feb 3.

PMID:
17346834
21.

Nasopharyngeal co-colonization with Staphylococcus aureus and Streptococcus pneumoniae in children is bacterial genotype independent.

Melles DC, Bogaert D, Gorkink RF, Peeters JK, Moorhouse MJ, Ott A, van Leeuwen WB, Simons G, Verbrugh HA, Hermans PW, van Belkum A.

Microbiology. 2007 Mar;153(Pt 3):686-92.

PMID:
17322188
22.

High-throughput amplification fragment length polymorphism (htAFLP) analysis identifies genetic lineage markers but not complement phenotype-specific markers in Moraxella catarrhalis.

Hays JP, Gorkink R, Simons G, Peeters JK, Eadie K, Verduin CM, Verbrugh H, van Belkum A.

Clin Microbiol Infect. 2007 Jan;13(1):55-62.

23.

Panton-Valentine leukocidin genes in Staphylococcus aureus.

Melles DC, van Leeuwen WB, Boelens HA, Peeters JK, Verbrugh HA, van Belkum A.

Emerg Infect Dis. 2006 Jul;12(7):1174-5. No abstract available.

24.

Growing applications and advancements in microarray technology and analysis tools.

Peeters JK, Van der Spek PJ.

Cell Biochem Biophys. 2005;43(1):149-66. Review.

PMID:
16043891
25.

Host- and tissue-specific pathogenic traits of Staphylococcus aureus.

van Leeuwen WB, Melles DC, Alaidan A, Al-Ahdal M, Boelens HA, Snijders SV, Wertheim H, van Duijkeren E, Peeters JK, van der Spek PJ, Gorkink R, Simons G, Verbrugh HA, van Belkum A.

J Bacteriol. 2005 Jul;187(13):4584-91.

26.

Natural population dynamics and expansion of pathogenic clones of Staphylococcus aureus.

Melles DC, Gorkink RF, Boelens HA, Snijders SV, Peeters JK, Moorhouse MJ, van der Spek PJ, van Leeuwen WB, Simons G, Verbrugh HA, van Belkum A.

J Clin Invest. 2004 Dec;114(12):1732-40.

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