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Items: 1 to 50 of 191

1.

SWeeP: representing large biological sequences datasets in compact vectors.

De Pierri CR, Voyceik R, Santos de Mattos LGC, Kulik MG, Camargo JO, Repula de Oliveira AM, de Lima Nichio BT, Marchaukoski JN, da Silva Filho AC, Guizelini D, Ortega JM, Pedrosa FO, Raittz RT.

Sci Rep. 2020 Jan 9;10(1):91. doi: 10.1038/s41598-019-55627-4.

2.

Regulation of Herbaspirillum seropedicae NifA by the GlnK PII signal transduction protein is mediated by effectors binding to allosteric sites.

Stefanello AA, Oliveira MAS, Souza EM, Pedrosa FO, Chubatsu LS, Huergo LF, Dixon R, Monteiro RA.

Biochim Biophys Acta Proteins Proteom. 2019 Dec 19;1868(3):140348. doi: 10.1016/j.bbapap.2019.140348. [Epub ahead of print]

PMID:
31866507
3.

Virulence characteristics and antimicrobial resistance of Aeromonas veronii biovar sobria 312M, a clinical isolate.

Prediger KC, Dallagassa CB, Moriel B, Vizzotto BS, Volanski W, Souza EM, Pedrosa FO, Weiss V, Alberton D, Guizelini D, Fadel-Picheth CMT.

Braz J Microbiol. 2019 Nov 9. doi: 10.1007/s42770-019-00180-5. [Epub ahead of print]

PMID:
31707718
4.

Repetitive genomic elements in Campomanesia xanthocarpa: prospection, characterization and cross amplification of molecular markers.

Petry VS, Stefenon VM, Machado LO, Klabunde GHF, Pedrosa FO, Nodari RO.

3 Biotech. 2019 Nov;9(11):423. doi: 10.1007/s13205-019-1953-8. Epub 2019 Oct 28.

PMID:
31696028
5.

Correction: Kinetics and structural features of dimeric glutamine-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites.

Santos ARS, Gerhardt ECM, Moure VR, Pedrosa FO, Souza EM, Diamanti R, Högbom M, Huergo LF.

J Biol Chem. 2019 Oct 11;294(41):15117. doi: 10.1074/jbc.AAC119.011035. Epub 2019 Oct 11. No abstract available.

6.

Proteomic and Metabolomic Analysis of Azospirillum brasilense ntrC Mutant under High and Low Nitrogen Conditions.

Kukolj C, Pedrosa FO, de Souza GA, Sumner LW, Lei Z, Sumner B, do Amaral FP, Juexin W, Trupti J, Huergo LF, Monteiro RA, Valdameri G, Stacey G, de Souza EM.

J Proteome Res. 2020 Jan 3;19(1):92-105. doi: 10.1021/acs.jproteome.9b00397. Epub 2019 Oct 25.

PMID:
31599156
7.

Metataxonomic and metagenomic analysis of mangrove microbiomes reveals community patterns driven by salinity and pH gradients in Paranaguá Bay, Brazil.

Ceccon DM, Faoro H, Lana PDC, Souza EM, Pedrosa FO.

Sci Total Environ. 2019 Dec 1;694:133609. doi: 10.1016/j.scitotenv.2019.133609. Epub 2019 Jul 27.

PMID:
31400683
8.

Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts.

Faoro H, Oliveira WK, Weiss VA, Tadra-Sfeir MZ, Cardoso RL, Balsanelli E, Brusamarello-Santos LCC, Camilios-Neto D, Cruz LM, Raittz RT, Marques ACQ, LiPuma J, Fadel-Picheth CMT, Souza EM, Pedrosa FO.

BMC Genomics. 2019 Aug 2;20(1):630. doi: 10.1186/s12864-019-5982-9.

9.

Uncovering prokaryotic biodiversity within aerosols of the pristine Amazon forest.

Souza FFC, Rissi DV, Pedrosa FO, Souza EM, Baura VA, Monteiro RA, Balsanelli E, Cruz LM, Souza RAF, Andreae MO, Reis RA, Godoi RHM, Huergo LF.

Sci Total Environ. 2019 Oct 20;688:83-86. doi: 10.1016/j.scitotenv.2019.06.218. Epub 2019 Jun 15.

PMID:
31229831
10.

Genome Analysis of Entomopathogenic Bacillus sp. ABP14 Isolated from a Lignocellulosic Compost.

Andreazza AP, Cardoso RLA, Cocco J, Guizelini D, Faoro H, Tadra-Sfeir MZ, Balsanelli E, Cruz LM, Fadel-Picheth CMT, Donatti L, Souza EM, Foerster LA, Pedrosa FO, Chubatsu LS.

Genome Biol Evol. 2019 Jun 1;11(6):1658-1662. doi: 10.1093/gbe/evz114.

11.

Cellulose production increases sorghum colonization and the pathogenic potential of Herbaspirillum rubrisubalbicans M1.

Tuleski TR, Baura VA, Donatti L, Pedrosa FO, Souza EM, Monteiro RA.

Sci Rep. 2019 Mar 11;9(1):4041. doi: 10.1038/s41598-019-40600-y.

12.

The ammonium transporter AmtB and the PII signal transduction protein GlnZ are required to inhibit DraG in Azospirillum brasilense.

Moure VR, Siöberg CLB, Valdameri G, Nji E, Oliveira MAS, Gerdhardt ECM, Pedrosa FO, Mitchell DA, Seefeldt LC, Huergo LF, Högbom M, Nordlund S, Souza EM.

FEBS J. 2019 Mar;286(6):1214-1229. doi: 10.1111/febs.14745. Epub 2019 Feb 12.

PMID:
30633437
13.

Fatty acid biosynthesis is enhanced in Escherichia coli strains with deletion in genes encoding the PII signaling proteins.

Rodrigues TE, Sassaki GL, Valdameri G, Pedrosa FO, Souza EM, Huergo LF.

Arch Microbiol. 2019 Mar;201(2):209-214. doi: 10.1007/s00203-018-1603-2. Epub 2018 Nov 30.

PMID:
30506165
14.

The deuridylylation activity of Herbaspirillum seropedicae GlnD protein is regulated by the glutamine:2-oxoglutarate ratio.

Emori MT, Tomazini LF, Souza EM, Pedrosa FO, Chubatsu LS, Oliveira MAS.

Biochim Biophys Acta Proteins Proteom. 2018 Dec;1866(12):1216-1223. doi: 10.1016/j.bbapap.2018.09.009. Epub 2018 Oct 2.

PMID:
30287221
15.

Influence of ancient anthropogenic activities on the mangrove soil microbiome.

Huergo LF, Rissi DV, Elias AS, Gonçalves MV, Gernet MV, Barreto F, Dahmer GW, Reis RA, Pedrosa FO, Souza EM, Monteiro RA, Baura VA, Balsanelli E, Cruz LM.

Sci Total Environ. 2018 Dec 15;645:1-9. doi: 10.1016/j.scitotenv.2018.07.094. Epub 2018 Jul 14.

PMID:
30015113
16.

Tailoring recombinant lipases: keeping the His-tag favors esterification reactions, removing it favors hydrolysis reactions.

de Almeida JM, Moure VR, Müller-Santos M, de Souza EM, Pedrosa FO, Mitchell DA, Krieger N.

Sci Rep. 2018 Jul 3;8(1):10000. doi: 10.1038/s41598-018-27579-8.

17.

Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures.

Lammel DR, Barth G, Ovaskainen O, Cruz LM, Zanatta JA, Ryo M, de Souza EM, Pedrosa FO.

Microbiome. 2018 Jun 11;6(1):106. doi: 10.1186/s40168-018-0482-8.

18.

PHB Biosynthesis Counteracts Redox Stress in Herbaspirillum seropedicae.

Batista MB, Teixeira CS, Sfeir MZT, Alves LPS, Valdameri G, Pedrosa FO, Sassaki GL, Steffens MBR, de Souza EM, Dixon R, Müller-Santos M.

Front Microbiol. 2018 Mar 15;9:472. doi: 10.3389/fmicb.2018.00472. eCollection 2018.

19.

Kinetics and structural features of dimeric glutamine-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites.

Santos ARS, Gerhardt ECM, Moure VR, Pedrosa FO, Souza EM, Diamanti R, Högbom M, Huergo LF.

J Biol Chem. 2018 May 11;293(19):7397-7407. doi: 10.1074/jbc.RA118.002241. Epub 2018 Mar 26. Erratum in: J Biol Chem. 2019 Oct 11;294(41):15117.

20.

Characteristics of an Aeromonas trota strain isolated from cerebrospinal fluid.

Dallagassa CB, Surek M, Vizzotto BS, Prediger KC, Moriel B, Wolf S, Weiss V, Cruz LM, Assis FEA, Paludo KS, Rego FGM, Farah SMSS, Picheth G, Souza EM, Pedrosa FO, Chubatsu LS, Fadel-Picheth CMT.

Microb Pathog. 2018 Mar;116:109-112. doi: 10.1016/j.micpath.2018.01.017. Epub 2018 Jan 31.

PMID:
29355700
21.

Proteome analysis of an Escherichia coli ptsN-null strain under different nitrogen regimes.

Gravina F, Sanchuki HS, Rodrigues TE, Gerhardt ECM, Pedrosa FO, Souza EM, Valdameri G, de Souza GA, Huergo LF.

J Proteomics. 2018 Mar 1;174:28-35. doi: 10.1016/j.jprot.2017.12.006. Epub 2017 Dec 21.

PMID:
29274402
22.

Cecal Microbiota in Broilers Fed with Prebiotics.

Mesa D, Lammel DR, Balsanelli E, Sena C, Noseda MD, Caron LF, Cruz LM, Pedrosa FO, Souza EM.

Front Genet. 2017 Oct 17;8:153. doi: 10.3389/fgene.2017.00153. eCollection 2017. No abstract available.

23.

Comparative Genomics of Sibling Species of Fonsecaea Associated with Human Chromoblastomycosis.

Vicente VA, Weiss VA, Bombassaro A, Moreno LF, Costa FF, Raittz RT, Leão AC, Gomes RR, Bocca AL, Fornari G, de Castro RJA, Sun J, Faoro H, Tadra-Sfeir MZ, Baura V, Balsanelli E, Almeida SR, Dos Santos SS, Teixeira MM, Soares Felipe MS, do Nascimento MMF, Pedrosa FO, Steffens MB, Attili-Angelis D, Najafzadeh MJ, Queiroz-Telles F, Souza EM, De Hoog S.

Front Microbiol. 2017 Oct 9;8:1924. doi: 10.3389/fmicb.2017.01924. eCollection 2017.

24.

The transcriptional regulator NtrC controls glucose-6-phosphate dehydrogenase expression and polyhydroxybutyrate synthesis through NADPH availability in Herbaspirillum seropedicae.

Sacomboio ENM, Kim EYS, Correa HLR, Bonato P, Pedrosa FO, de Souza EM, Chubatsu LS, Müller-Santos M.

Sci Rep. 2017 Oct 19;7(1):13546. doi: 10.1038/s41598-017-12649-0.

25.

Expression and purification of untagged GlnK proteins from actinobacteria.

Gerhardt ECM, Moure VR, Souza AW, Pedrosa FO, Souza EM, Diacovich L, Gramajo H, Huergo LF.

EXCLI J. 2017 Jun 27;16:949-958. doi: 10.17179/excli2017-394. eCollection 2017.

26.

Detection of misidentifications of species from the Burkholderia cepacia complex and description of a new member, the soil bacterium Burkholderia catarinensis sp. nov.

Bach E, Sant'Anna FH, Magrich Dos Passos JF, Balsanelli E, de Baura VA, Pedrosa FO, de Souza EM, Passaglia LMP.

Pathog Dis. 2017 Aug 31;75(6). doi: 10.1093/femspd/ftx076.

PMID:
28859310
27.

Labeled Azospirillum brasilense wild type and excretion-ammonium strains in association with barley roots.

Santos ARS, Etto RM, Furmam RW, Freitas DL, Santos KFDN, Souza EM, Pedrosa FO, Ayub RA, Steffens MBR, Galvão CW.

Plant Physiol Biochem. 2017 Sep;118:422-426. doi: 10.1016/j.plaphy.2017.07.003. Epub 2017 Jul 4.

PMID:
28711791
28.

Herbaspirillum rubrisubalbicans, a mild pathogen impairs growth of rice by augmenting ethylene levels.

Valdameri G, Alberton D, Moure VR, Kokot TB, Kukolj C, Brusamarello-Santos LCC, Monteiro RA, Pedrosa FO, de Souza EM.

Plant Mol Biol. 2017 Aug;94(6):625-640. doi: 10.1007/s11103-017-0629-1. Epub 2017 Jul 3.

PMID:
28674938
29.

Molecular characterisation of Salmonella strains isolated from outbreaks and sporadic cases of diarrhoea occurred in Paraná State, South of Brazil.

Assis FEA, Dallagassa CB, Farah SMSS, Souza EM, Pedrosa FO, Chubatsu LS, Fadel-Picheth CMT.

Epidemiol Infect. 2017 Jul;145(9):1953-1960. doi: 10.1017/S0950268817000619. Epub 2017 Apr 3.

PMID:
28367777
30.

Development and validation of the first SSR markers for Mimosa scabrella Benth.

Saiki FA, Bernardi AP, Reis MS, Faoro H, Souza EM, Pedrosa FO, Mantovani A, Guidolin AF.

Genet Mol Res. 2017 Feb 16;16(1). doi: 10.4238/gmr16019571.

PMID:
28218791
31.

Genome Sequence of Type Strain Fonsecaea multimorphosa CBS 980.96T, a Causal Agent of Feline Cerebral Phaeohyphomycosis.

Leao AC, Weiss VA, Vicente VA, Costa F, Bombassaro A, Raittz RT, Steffens MB, Pedrosa FO, Gomes RR, Baura V, Faoro H, Sfeir MZ, Balsanelli E, Moreno LF, Najafzadeh MJ, de Hoog S, Souza EM.

Genome Announc. 2017 Feb 16;5(7). pii: e01666-16. doi: 10.1128/genomeA.01666-16.

32.

Utilization of carbon sources by clinical isolates of Aeromonas.

Prediger KC, Surek M, Dallagassa CB, Assis FE, Piantavini MS, Souza EM, Pedrosa FO, Farah SM, Alberton D, Fadel-Picheth CM.

Can J Microbiol. 2017 Apr;63(4):359-364. doi: 10.1139/cjm-2016-0526. Epub 2016 Dec 22.

PMID:
28177792
33.

ProClaT, a new bioinformatics tool for in silico protein reclassification: case study of DraB, a protein coded from the draTGB operon in Azospirillum brasilense.

Rubel ET, Raittz RT, Coimbra NA, Gehlen MA, Pedrosa FO.

BMC Bioinformatics. 2016 Dec 15;17(Suppl 18):455. doi: 10.1186/s12859-016-1338-5.

34.

A simple and efficient method for poly-3-hydroxybutyrate quantification in diazotrophic bacteria within 5 minutes using flow cytometry.

Alves LP, Almeida AT, Cruz LM, Pedrosa FO, de Souza EM, Chubatsu LS, Müller-Santos M, Valdameri G.

Braz J Med Biol Res. 2017 Jan 16;50(1):e5492. doi: 10.1590/1414-431X20165492.

35.

A broad pH range and processive chitinase from a metagenome library.

Thimoteo SS, Glogauer A, Faoro H, de Souza EM, Huergo LF, Moerschbacher BM, Pedrosa FO.

Braz J Med Biol Res. 2017 Jan 5;50(1):e5658. doi: 10.1590/1414-431X20165658.

36.

Dynamics of the Escherichia coli proteome in response to nitrogen starvation and entry into the stationary phase.

Sanchuki HB, Gravina F, Rodrigues TE, Gerhardt EC, Pedrosa FO, Souza EM, Raittz RT, Valdameri G, de Souza GA, Huergo LF.

Biochim Biophys Acta Proteins Proteom. 2017 Mar;1865(3):344-352. doi: 10.1016/j.bbapap.2016.12.002. Epub 2016 Dec 8.

PMID:
27939605
37.

The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72.

Faoro H, Rene Menegazzo R, Battistoni F, Gyaneshwar P, do Amaral FP, Taulé C, Rausch S, Gonçalves Galvão P, de Los Santos C, Mitra S, Heijo G, Sheu SY, Chen WM, Mareque C, Zibetti Tadra-Sfeir M, Ivo Baldani J, Maluk M, Paula Guimarães A, Stacey G, de Souza EM, Pedrosa FO, Magalhães Cruz L, James EK.

Environ Microbiol Rep. 2017 Jun;9(3):223-238. doi: 10.1111/1758-2229.12502. Epub 2017 Jan 27.

PMID:
27893193
38.

A NodD-like protein activates transcription of genes involved with naringenin degradation in a flavonoid-dependent manner in Herbaspirillum seropedicae.

Wassem R, Marin AM, Daddaoua A, Monteiro RA, Chubatsu LS, Ramos JL, Deakin WJ, Broughton WJ, Pedrosa FO, Souza EM.

Environ Microbiol. 2017 Mar;19(3):1030-1040. doi: 10.1111/1462-2920.13604. Epub 2017 Feb 10.

PMID:
27878922
39.

GFinisher: a new strategy to refine and finish bacterial genome assemblies.

Guizelini D, Raittz RT, Cruz LM, Souza EM, Steffens MB, Pedrosa FO.

Sci Rep. 2016 Oct 10;6:34963. doi: 10.1038/srep34963.

40.

The NtrY-NtrX two-component system is involved in controlling nitrate assimilation in Herbaspirillum seropedicae strain SmR1.

Bonato P, Alves LR, Osaki JH, Rigo LU, Pedrosa FO, Souza EM, Zhang N, Schumacher J, Buck M, Wassem R, Chubatsu LS.

FEBS J. 2016 Nov;283(21):3919-3930. doi: 10.1111/febs.13897. Epub 2016 Oct 5.

41.

Draft Genome Sequence of Fonsecaea nubica Strain CBS 269.64, Causative Agent of Human Chromoblastomycosis.

Costa FF, de Hoog S, Raittz RT, Weiss VA, Leão AC, Bombassaro A, Sun J, Moreno LF, Souza EM, Pedrosa FO, Steffens MB, Baura V, Tadra-Sfeir MZ, Balsanelli E, Najafzadeh MJ, Gomes RR, Felipe MS, Teixeira M, Santos GD, Xi L, Alves de Castro MA, Vicente VA.

Genome Announc. 2016 Aug 4;4(4). pii: e00735-16. doi: 10.1128/genomeA.00735-16.

42.

Draft Genome Sequence of Fonsecaea monophora Strain CBS 269.37, an Agent of Human Chromoblastomycosis.

Bombassaro A, de Hoog S, Weiss VA, Souza EM, Leão AC, Costa FF, Baura V, Tadra-Sfeir MZ, Balsanelli E, Moreno LF, Raittz RT, Steffens MB, Pedrosa FO, Sun J, Xi L, Bocca AL, Felipe MS, Teixeira M, Santos GD, Telles Filho FQ, Azevedo CM, Gomes RR, Vicente VA.

Genome Announc. 2016 Jul 28;4(4). pii: e00731-16. doi: 10.1128/genomeA.00731-16.

43.

RNA-seq analyses reveal insights into the function of respiratory nitrate reductase of the diazotroph Herbaspirillum seropedicae.

Bonato P, Batista MB, Camilios-Neto D, Pankievicz VC, Tadra-Sfeir MZ, Monteiro RA, Pedrosa FO, Souza EM, Chubatsu LS, Wassem R, Rigo LU.

Environ Microbiol. 2016 Sep;18(8):2677-88. doi: 10.1111/1462-2920.13422. Epub 2016 Jul 12.

PMID:
27322548
44.

In vitro characterization of the NAD+ synthetase NadE1 from Herbaspirillum seropedicae.

Laskoski K, Santos AR, Bonatto AC, Pedrosa FO, Souza EM, Huergo LF.

Arch Microbiol. 2016 May;198(4):307-13. doi: 10.1007/s00203-016-1190-z. Epub 2016 Jan 22.

PMID:
26802007
45.

RNA-seq transcriptional profiling of Herbaspirillum seropedicae colonizing wheat (Triticum aestivum) roots.

Pankievicz VC, Camilios-Neto D, Bonato P, Balsanelli E, Tadra-Sfeir MZ, Faoro H, Chubatsu LS, Donatti L, Wajnberg G, Passetti F, Monteiro RA, Pedrosa FO, Souza EM.

Plant Mol Biol. 2016 Apr;90(6):589-603. doi: 10.1007/s11103-016-0430-6. Epub 2016 Jan 22.

PMID:
26801330
46.

Conserved histidine residues at the ferroxidase centre of the Campylobacter jejuni Dps protein are not strictly required for metal binding and oxidation.

Sanchuki HBS, Valdameri G, Moure VR, Rodriguez JA, Pedrosa FO, Souza EM, Korolik V, Ribeiro RR, Huergo LF.

Microbiology. 2016 Jan;162(1):156-163. doi: 10.1099/mic.0.000210. Epub 2015 Nov 9.

PMID:
26555736
47.

Complete Genome Sequence of Herbaspirillum hiltneri N3 (DSM 17495), Isolated from Surface-Sterilized Wheat Roots.

Guizelini D, Saizaki PM, Coimbra NA, Weiss VA, Faoro H, Sfeir MZ, Baura VA, Monteiro RA, Chubatsu LS, Souza EM, Cruz LM, Pedrosa FO, Raittz RT, Marchaukoski JN, Steffens MB.

Genome Announc. 2015 Oct 29;3(5). pii: e01288-15. doi: 10.1128/genomeA.01288-15.

48.

2-Oxoglutarate levels control adenosine nucleotide binding by Herbaspirillum seropedicae PII proteins.

Oliveira MA, Gerhardt EC, Huergo LF, Souza EM, Pedrosa FO, Chubatsu LS.

FEBS J. 2015 Dec;282(24):4797-809. doi: 10.1111/febs.13542. Epub 2015 Oct 24.

49.

Effect of point mutations on Herbaspirillum seropedicae NifA activity.

Aquino B, Stefanello AA, Oliveira MA, Pedrosa FO, Souza EM, Monteiro RA, Chubatsu LS.

Braz J Med Biol Res. 2015 Aug;48(8):683-90. doi: 10.1590/1414-431X20154522. Epub 2015 Jul 10.

50.

Draft Genome Sequence of Aeromonas caviae 8LM, Isolated from Stool Culture of a Child with Diarrhea.

Moriel B, Cruz LM, Dallagassa CB, Faoro H, de Souza EM, Pedrosa FO, Rego FG, Picheth G, Fadel-Picheth CM.

Genome Announc. 2015 May 21;3(3). pii: e00524-15. doi: 10.1128/genomeA.00524-15.

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