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Items: 1 to 50 of 57

1.

Roles of Bacillus subtilis RecA, Nucleotide Excision Repair and TLS Polymerases In Counteracting Cr(VI)-Promoted DNA Damage.

Santos-Escobar F, Leyva Sánchez HC, Ramírez-Ramírez N, Obregón-Herrera A, Pedraza-Reyes M.

J Bacteriol. 2019 Feb 11. pii: JB.00073-19. doi: 10.1128/JB.00073-19. [Epub ahead of print]

PMID:
30745368
2.

YwqL (EndoV), ExoA and PolA act in a novel alternative excision pathway to repair deaminated DNA bases in Bacillus subtilis.

Patlán AG, Ayala-García VM, Valenzuela-García LI, Meneses-Plascencia J, Vargas-Arias PL, Barraza-Salas M, Setlow P, Brieba LG, Pedraza-Reyes M.

PLoS One. 2019 Feb 6;14(2):e0211653. doi: 10.1371/journal.pone.0211653. eCollection 2019.

3.

Does juvenile hormone prompt oxidative stress in male damselflies?

Martínez-Lendech N, Osorio-Beristain M, Franco B, Pedraza-Reyes M, Obregón A, Contreras-Garduño J.

J Exp Biol. 2019 Mar 8;222(Pt 5). pii: jeb194530. doi: 10.1242/jeb.194530.

PMID:
30718372
4.

Mfd protects against oxidative stress in Bacillus subtilis independently of its canonical function in DNA repair.

Martin HA, Porter KE, Vallin C, Ermi T, Contreras N, Pedraza-Reyes M, Robleto EA.

BMC Microbiol. 2019 Jan 28;19(1):26. doi: 10.1186/s12866-019-1394-x.

5.

Non-canonical processing of DNA photodimers with Bacillus subtilis UV-endonuclease YwjD, 5'→3' exonuclease YpcP and low-fidelity DNA polymerases YqjH and YqjW.

Patlán AG, Corona SU, Ayala-García VM, Pedraza-Reyes M.

DNA Repair (Amst). 2018 Oct;70:1-9. doi: 10.1016/j.dnarep.2018.07.007. Epub 2018 Jul 27.

PMID:
30096406
6.

Transcriptional coupling (Mfd) and DNA damage scanning (DisA) coordinate excision repair events for efficient Bacillus subtilis spore outgrowth.

Valenzuela-García LI, Ayala-García VM, Regalado-García AG, Setlow P, Pedraza-Reyes M.

Microbiologyopen. 2018 Oct;7(5):e00593. doi: 10.1002/mbo3.593. Epub 2018 Mar 13.

7.

Implementation of a loss-of-function system to determine growth and stress-associated mutagenesis in Bacillus subtilis.

Villegas-Negrete N, Robleto EA, Obregón-Herrera A, Yasbin RE, Pedraza-Reyes M.

PLoS One. 2017 Jul 11;12(7):e0179625. doi: 10.1371/journal.pone.0179625. eCollection 2017.

8.

LC-MS/MS proteomic analysis of starved Bacillus subtilis cells overexpressing ribonucleotide reductase (nrdEF): implications in stress-associated mutagenesis.

Castro-Cerritos KV, Lopez-Torres A, Obregón-Herrera A, Wrobel K, Wrobel K, Pedraza-Reyes M.

Curr Genet. 2018 Feb;64(1):215-222. doi: 10.1007/s00294-017-0722-7. Epub 2017 Jun 17.

PMID:
28624879
9.

Role of Ribonucleotide Reductase in Bacillus subtilis Stress-Associated Mutagenesis.

Castro-Cerritos KV, Yasbin RE, Robleto EA, Pedraza-Reyes M.

J Bacteriol. 2017 Jan 30;199(4). pii: e00715-16. doi: 10.1128/JB.00715-16. Print 2017 Feb 15.

11.

Role of Base Excision Repair (BER) in Transcription-associated Mutagenesis of Nutritionally Stressed Nongrowing Bacillus subtilis Cell Subpopulations.

Ambriz-Aviña V, Yasbin RE, Robleto EA, Pedraza-Reyes M.

Curr Microbiol. 2016 Nov;73(5):721-726. doi: 10.1007/s00284-016-1122-9. Epub 2016 Aug 16.

12.

Stationary-Phase Mutagenesis in Stressed Bacillus subtilis Cells Operates by Mfd-Dependent Mutagenic Pathways.

Gómez-Marroquín M, Martin HA, Pepper A, Girard ME, Kidman AA, Vallin C, Yasbin RE, Pedraza-Reyes M, Robleto EA.

Genes (Basel). 2016 Jul 5;7(7). pii: E33. doi: 10.3390/genes7070033.

13.

The RecA-Dependent SOS Response Is Active and Required for Processing of DNA Damage during Bacillus subtilis Sporulation.

Ramírez-Guadiana FH, Barajas-Ornelas Rdel C, Corona-Bautista SU, Setlow P, Pedraza-Reyes M.

PLoS One. 2016 Mar 1;11(3):e0150348. doi: 10.1371/journal.pone.0150348. eCollection 2016.

14.

Role of Bacillus subtilis DNA Glycosylase MutM in Counteracting Oxidatively Induced DNA Damage and in Stationary-Phase-Associated Mutagenesis.

Gómez-Marroquín M, Vidales LE, Debora BN, Santos-Escobar F, Obregón-Herrera A, Robleto EA, Pedraza-Reyes M.

J Bacteriol. 2015 Jun;197(11):1963-71. doi: 10.1128/JB.00147-15. Epub 2015 Mar 30.

15.

Applications of flow cytometry to characterize bacterial physiological responses.

Ambriz-Aviña V, Contreras-Garduño JA, Pedraza-Reyes M.

Biomed Res Int. 2014;2014:461941. doi: 10.1155/2014/461941. Epub 2014 Sep 9. Review.

16.

Role of Bacillus subtilis error prevention oxidized guanine system in counteracting hexavalent chromium-promoted oxidative DNA damage.

Santos-Escobar F, Gutiérrez-Corona JF, Pedraza-Reyes M.

Appl Environ Microbiol. 2014 Sep;80(17):5493-502. doi: 10.1128/AEM.01665-14. Epub 2014 Jun 27.

17.

Error-prone processing of apurinic/apyrimidinic (AP) sites by PolX underlies a novel mechanism that promotes adaptive mutagenesis in Bacillus subtilis.

Barajas-Ornelas Rdel C, Ramírez-Guadiana FH, Juárez-Godínez R, Ayala-García VM, Robleto EA, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2014 Aug 15;196(16):3012-22. doi: 10.1128/JB.01681-14. Epub 2014 Jun 9.

18.

Interaction of apurinic/apyrimidinic endonucleases Nfo and ExoA with the DNA integrity scanning protein DisA in the processing of oxidative DNA damage during Bacillus subtilis spore outgrowth.

Campos SS, Ibarra-Rodriguez JR, Barajas-Ornelas RC, Ramírez-Guadiana FH, Obregón-Herrera A, Setlow P, Pedraza-Reyes M.

J Bacteriol. 2014 Feb;196(3):568-78. doi: 10.1128/JB.01259-13. Epub 2013 Nov 15.

19.

Transcriptional coupling of DNA repair in sporulating Bacillus subtilis cells.

Ramírez-Guadiana FH, Del Carmen Barajas-Ornelas R, Ayala-García VM, Yasbin RE, Robleto E, Pedraza-Reyes M.

Mol Microbiol. 2013 Dec;90(5):1088-99. doi: 10.1111/mmi.12417. Epub 2013 Oct 25.

20.

Genetic variation in oxidative stress and DNA repair genes in a Mexican population.

Vázquez-Alaniz F, Pedraza-Reyes M, Barraza-Salas M, Castellanos-Juárez FX, Téllez-Valencia A, Sandoval-Carrillo AA, Maravilla-Domínguez MA, La Llave-León O, Salas-Pacheco JM.

Ann Hum Biol. 2013 Jul;40(4):355-9. doi: 10.3109/03014460.2013.784355. Epub 2013 Apr 16.

PMID:
23590225
21.

Alternative excision repair of ultraviolet B- and C-induced DNA damage in dormant and developing spores of Bacillus subtilis.

Ramírez-Guadiana FH, Barraza-Salas M, Ramírez-Ramírez N, Ortiz-Cortés M, Setlow P, Pedraza-Reyes M.

J Bacteriol. 2012 Nov;194(22):6096-104. doi: 10.1128/JB.01340-12. Epub 2012 Sep 7.

22.

Transcriptional de-repression and Mfd are mutagenic in stressed Bacillus subtilis cells.

Martin HA, Pedraza-Reyes M, Yasbin RE, Robleto EA.

J Mol Microbiol Biotechnol. 2011;21(1-2):45-58. doi: 10.1159/000332751. Epub 2012 Jan 13.

23.

Mfd and transcriptional derepression cause genetic diversity in Bacillus subtilis.

Robleto EA, Martin HA, Pedraza-Reyes M.

Front Biosci (Elite Ed). 2012 Jan 1;4:1246-54. Review.

PMID:
22201950
24.

Roles of endonuclease V, uracil-DNA glycosylase, and mismatch repair in Bacillus subtilis DNA base-deamination-induced mutagenesis.

López-Olmos K, Hernández MP, Contreras-Garduño JA, Robleto EA, Setlow P, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2012 Jan;194(2):243-52. doi: 10.1128/JB.06082-11. Epub 2011 Nov 4.

25.

Role of the Nfo and ExoA apurinic/apyrimidinic endonucleases in radiation resistance and radiation-induced mutagenesis of Bacillus subtilis spores.

Moeller R, Setlow P, Pedraza-Reyes M, Okayasu R, Reitz G, Nicholson WL.

J Bacteriol. 2011 Jun;193(11):2875-9. doi: 10.1128/JB.00134-11. Epub 2011 Mar 25.

26.

Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.

Debora BN, Vidales LE, Ramírez R, Ramírez M, Robleto EA, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2011 Jan;193(1):236-45. doi: 10.1128/JB.00940-10. Epub 2010 Oct 22.

27.

Replicative and integrative plasmids for production of human interferon gamma in Bacillus subtilis.

Rojas Contreras JA, Pedraza-Reyes M, Ordoñez LG, Estrada NU, Barba de la Rosa AP, De León-Rodríguez A.

Plasmid. 2010 Nov;64(3):170-6. doi: 10.1016/j.plasmid.2010.07.003. Epub 2010 Jul 17.

PMID:
20621119
28.

Transcription-associated mutation in Bacillus subtilis cells under stress.

Pybus C, Pedraza-Reyes M, Ross CA, Martin H, Ona K, Yasbin RE, Robleto E.

J Bacteriol. 2010 Jul;192(13):3321-8. doi: 10.1128/JB.00354-10. Epub 2010 Apr 30.

29.

Effects of forespore-specific overexpression of apurinic/apyrimidinic endonuclease Nfo on the DNA-damage resistance properties of Bacillus subtilis spores.

Barraza-Salas M, Ibarra-Rodríguez JR, Mellado SJ, Salas-Pacheco JM, Setlow P, Pedraza-Reyes M.

FEMS Microbiol Lett. 2010 Jan;302(2):159-65. doi: 10.1111/j.1574-6968.2009.01845.x. Epub 2009 Nov 3.

30.

Role of the Y-family DNA polymerases YqjH and YqjW in protecting sporulating Bacillus subtilis cells from DNA damage.

Rivas-Castillo AM, Yasbin RE, Robleto E, Nicholson WL, Pedraza-Reyes M.

Curr Microbiol. 2010 Apr;60(4):263-7. doi: 10.1007/s00284-009-9535-3. Epub 2009 Nov 19.

PMID:
19924481
31.

Engineering and directed evolution of a Ca2+ binding site A-deficient AprE mutant reveal an essential contribution of the loop Leu75-Leu82 to enzyme activity.

Romero-García ER, Téllez-Valencia A, Trujillo MF, Sampedro JG, Nájera H, Rojo-Domínguez A, García-Soto J, Pedraza-Reyes M.

J Biomed Biotechnol. 2009;2009:201075. doi: 10.1155/2009/201075. Epub 2009 Aug 20.

32.

Synthesis, characterization, and biological activity studies of copper(II) mixed compound with histamine and nalidixic acid.

Bivián-Castro EY, López MG, Pedraza-Reyes M, Bernès S, Mendoza-Díaz G.

Bioinorg Chem Appl. 2009:603651. doi: 10.1155/2009/603651. Epub 2009 Jun 18.

33.

Expression, characterization and synergistic interactions of Myxobacter Sp. AL-1 Cel9 and Cel48 glycosyl hydrolases.

Ramírez-Ramírez N, Romero-García ER, Calderón VC, Avitia CI, Téllez-Valencia A, Pedraza-Reyes M.

Int J Mol Sci. 2008 Mar;9(3):247-57. Epub 2008 Feb 29.

34.

Role of the novel protein TmcR in regulating the expression of the cel9-cel48 operon from Myxobacter sp. AL-1.

Ramírez-Ramírez N, Castellanos-Juárez FX, Espinosa VE, Castellano LE, Téllez-Valencia A, Pedraza-Reyes M.

Antonie Van Leeuwenhoek. 2009 Mar;95(3):239-48. doi: 10.1007/s10482-009-9307-x. Epub 2009 Feb 5.

PMID:
19194780
35.

Defects in the error prevention oxidized guanine system potentiate stationary-phase mutagenesis in Bacillus subtilis.

Vidales LE, Cárdenas LC, Robleto E, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2009 Jan;191(2):506-13. doi: 10.1128/JB.01210-08. Epub 2008 Nov 14.

36.

Degradation of single stranded nucleic acids by the chemical nuclease activity of the metal complex [Cu(phen)(nal)]+.

Ramírez-Ramírez N, Mendoza-Díaz G, Pedraza-Reyes M.

Bioinorg Chem Appl. 2003:25-34. doi: 10.1155/S1565363303000025.

37.

Role of the Nfo and ExoA apurinic/apyrimidinic endonucleases in repair of DNA damage during outgrowth of Bacillus subtilis spores.

Ibarra JR, Orozco AD, Rojas JA, López K, Setlow P, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2008 Mar;190(6):2031-8. doi: 10.1128/JB.01625-07. Epub 2008 Jan 18.

38.

Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress.

Robleto EA, Yasbin R, Ross C, Pedraza-Reyes M.

Crit Rev Biochem Mol Biol. 2007 Sep-Oct;42(5):327-39. Review.

PMID:
17917870
39.

Novel role of mfd: effects on stationary-phase mutagenesis in Bacillus subtilis.

Ross C, Pybus C, Pedraza-Reyes M, Sung HM, Yasbin RE, Robleto E.

J Bacteriol. 2006 Nov;188(21):7512-20. Epub 2006 Sep 1.

40.

Molecular characterization of a G protein alpha-subunit-encoding gene from Mucor circinelloides.

Meza-Carmen V, García-Soto J, Ongay-Larios L, Coria R, Pedraza-Reyes M, Arnau J, Reyna-Lopez G, Martínez-Cadena G.

Can J Microbiol. 2006 Jul;52(7):627-35.

PMID:
16917518
41.

YtkD and MutT protect vegetative cells but not spores of Bacillus subtilis from oxidative stress.

Castellanos-Juárez FX, Alvarez-Alvarez C, Yasbin RE, Setlow B, Setlow P, Pedraza-Reyes M.

J Bacteriol. 2006 Mar;188(6):2285-9.

42.

Role of the Nfo (YqfS) and ExoA apurinic/apyrimidinic endonucleases in protecting Bacillus subtilis spores from DNA damage.

Salas-Pacheco JM, Setlow B, Setlow P, Pedraza-Reyes M.

J Bacteriol. 2005 Nov;187(21):7374-81.

43.
44.

Essential residues in the chromate transporter ChrA of Pseudomonas aeruginosa.

Aguilera S, Aguilar ME, Chávez MP, López-Meza JE, Pedraza-Reyes M, Campos-García J, Cervantes C.

FEMS Microbiol Lett. 2004 Mar 12;232(1):107-12.

45.
46.

A Rho GTPase controls the rate of protein synthesis in the sea urchin egg.

Manzo S, Martínez-Cadena G, López-Godínez J, Pedraza-Reyes M, García-Soto J.

Biochem Biophys Res Commun. 2003 Oct 24;310(3):685-90.

PMID:
14550256
47.

YqfS from Bacillus subtilis is a spore protein and a new functional member of the type IV apurinic/apyrimidinic-endonuclease family.

Salas-Pacheco JM, Urtiz-Estrada N, Martínez-Cadena G, Yasbin RE, Pedraza-Reyes M.

J Bacteriol. 2003 Sep;185(18):5380-90.

48.

The non-catalytic amino acid Asp446 is essential for enzyme activity of the modular endocellulase Cel9 from Myxobacter sp. AL-1.

Téllez-Valencia A, Sandoval AA, Pedraza-Reyes M.

Curr Microbiol. 2003 Apr;46(4):307-10.

PMID:
12732983
49.
50.

Temporal secretion of a multicellulolytic system in Myxobacter sp. AL-1. Molecular cloning and heterologous expression of cel9 encoding a modular endocellulase clustered in an operon with cel48, an exocellobiohydrolase gene.

Avitia CI, Castellanos-Juárez FX, Sánchez E, Téllez-Valencia A, Fajardo-Cavazos P, Nicholson WL, Pedraza-Reyes M.

Eur J Biochem. 2000 Dec;267(24):7058-64.

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