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Items: 1 to 50 of 146

1.

Associations of Thigh and Abdominal Adipose Tissue Radiodensity with Glucose and Insulin in Nondiabetic African-Ancestry Men.

Tilves C, Zmuda JM, Kuipers AL, Carr JJ, Terry JG, Wheeler V, Peddada SD, Nair S, Miljkovic I.

Obesity (Silver Spring). 2020 Feb;28(2):404-411. doi: 10.1002/oby.22695. Epub 2019 Dec 24.

PMID:
31872575
2.

Frequency Modulated Möbius Model Accurately Predicts Rhythmic Signals in Biological and Physical Sciences.

Rueda C, Larriba Y, Peddada SD.

Sci Rep. 2019 Dec 10;9(1):18701. doi: 10.1038/s41598-019-54569-1.

3.

Health literacy: Impact on quality of life in head and neck cancer survivors.

Nilsen ML, Moskovitz J, Lyu L, Harrison C, Randazza E, Peddada SD, Johnson JT.

Laryngoscope. 2019 Dec 4. doi: 10.1002/lary.28360. [Epub ahead of print]

PMID:
31800111
4.

Order restricted inference in chronobiology.

Larriba Y, Rueda C, Fernández MA, Peddada SD.

Stat Med. 2020 Feb 10;39(3):265-278. doi: 10.1002/sim.8397. Epub 2019 Nov 25.

PMID:
31769057
5.

Impact of Neck Disability on Health-Related Quality of Life among Head and Neck Cancer Survivors.

Nilsen ML, Lyu L, Belsky MA, Mady LJ, Zandberg DP, Clump DA 2nd, Skinner HD, Peddada SD, George S, Johnson JT.

Otolaryngol Head Neck Surg. 2020 Jan;162(1):64-72. doi: 10.1177/0194599819883295. Epub 2019 Oct 15.

PMID:
31613686
6.

Understanding financial toxicity in head and neck cancer survivors.

Mady LJ, Lyu L, Owoc MS, Peddada SD, Thomas TH, Sabik LM, Johnson JT, Nilsen ML.

Oral Oncol. 2019 Aug;95:187-193. doi: 10.1016/j.oraloncology.2019.06.023. Epub 2019 Jun 28.

PMID:
31345389
7.

Psychosocial and behavioral pathways of metabolic syndrome in cancer caregivers.

Steel JL, Cheng H, Pathak R, Wang Y, Miceli J, Hecht CL, Haggerty D, Peddada S, Geller DA, Marsh W, Antoni M, Jones R, Kamarck T, Tsung A.

Psychooncology. 2019 Aug;28(8):1735-1742. doi: 10.1002/pon.5147. Epub 2019 Jul 8.

PMID:
31206896
8.

Quality Control of Quantitative High Throughput Screening Data.

Shockley KR, Gupta S, Harris SF, Lahiri SN, Peddada SD.

Front Genet. 2019 May 9;10:387. doi: 10.3389/fgene.2019.00387. eCollection 2019.

9.

Microarray Data Normalization and Robust Detection of Rhythmic Features.

Larriba Y, Rueda C, Fernández MA, Peddada SD.

Methods Mol Biol. 2019;1986:207-225. doi: 10.1007/978-1-4939-9442-7_9.

PMID:
31115890
10.

Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month.

Iszatt N, Janssen S, Lenters V, Dahl C, Stigum H, Knight R, Mandal S, Peddada S, González A, Midtvedt T, Eggesbø M.

Microbiome. 2019 Feb 27;7(1):34. doi: 10.1186/s40168-019-0645-2.

11.

Threshold Knot Selection for Large-Scale Spatial Models With Applications to the Deepwater Horizon Disaster.

Jelsema CM, Kwok RK, Peddada SD.

J Stat Comput Simul. 2019;89(11):2121-2137. doi: 10.1080/00949655.2019.1610884. Epub 2019 Apr 30.

12.

Exposures Related to House Dust Microbiota in a U.S. Farming Population.

Lee MK, Carnes MU, Butz N, Azcarate-Peril MA, Richards M, Umbach DM, Thorne PS, Beane Freeman LE, Peddada SD, London SJ.

Environ Health Perspect. 2018 Jun 1;126(6):067001. doi: 10.1289/EHP3145. eCollection 2018 Jun.

13.

Reduced Disc Shedding and Phagocytosis of Photoreceptor Outer Segment Contributes to Kava Kava Extract-induced Retinal Degeneration in F344/N Rats.

Yamashita H, Hoenerhoff MJ, Shockley KR, Peddada SD, Gerrish KE, Sutton D, Cummings CA, Wang Y, Julie FF, Behl M, Waidyanatha S, Sills RC, Pandiri AR.

Toxicol Pathol. 2018 Jul;46(5):564-573. doi: 10.1177/0192623318778796. Epub 2018 May 27.

14.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

15.

Preterm infants have distinct microbiomes not explained by mode of delivery, breastfeeding duration or antibiotic exposure.

Dahl C, Stigum H, Valeur J, Iszatt N, Lenters V, Peddada S, Bjørnholt JV, Midtvedt T, Mandal S, Eggesbø M.

Int J Epidemiol. 2018 Oct 1;47(5):1658-1669. doi: 10.1093/ije/dyy064.

PMID:
29688458
16.

A Bootstrap Based Measure Robust to the Choice of Normalization Methods for Detecting Rhythmic Features in High Dimensional Data.

Larriba Y, Rueda C, Fernández MA, Peddada SD.

Front Genet. 2018 Feb 2;9:24. doi: 10.3389/fgene.2018.00024. eCollection 2018.

17.

Visualizing detailed postdoctoral employment trends using a new career outcome taxonomy.

Xu H, Gilliam RST, Peddada SD, Buchold GM, Collins TRL.

Nat Biotechnol. 2018 Feb;36(2):197-202. doi: 10.1038/nbt.4059. Epub 2018 Jan 15. No abstract available.

18.

Analysis of Microbiome Data in the Presence of Excess Zeros.

Kaul A, Mandal S, Davidov O, Peddada SD.

Front Microbiol. 2017 Nov 7;8:2114. doi: 10.3389/fmicb.2017.02114. eCollection 2017.

19.

Seasonal change in the gut.

Peddada S.

Science. 2017 Aug 25;357(6353):754-755. doi: 10.1126/science.aao2997. Epub 2017 Aug 24. No abstract available.

PMID:
28839060
20.

Normalization and microbial differential abundance strategies depend upon data characteristics.

Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R.

Microbiome. 2017 Mar 3;5(1):27. doi: 10.1186/s40168-017-0237-y.

21.

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.

Hill-Burns EM, Debelius JW, Morton JT, Wissemann WT, Lewis MR, Wallen ZD, Peddada SD, Factor SA, Molho E, Zabetian CP, Knight R, Payami H.

Mov Disord. 2017 May;32(5):739-749. doi: 10.1002/mds.26942. Epub 2017 Feb 14.

22.

Structural zeros in high-dimensional data with applications to microbiome studies.

Kaul A, Davidov O, Peddada SD.

Biostatistics. 2017 Jul 1;18(3):422-433. doi: 10.1093/biostatistics/kxw053.

23.

The novel p53 target TNFAIP8 variant 2 is increased in cancer and offsets p53-dependent tumor suppression.

Lowe JM, Nguyen TA, Grimm SA, Gabor KA, Peddada SD, Li L, Anderson CW, Resnick MA, Menendez D, Fessler MB.

Cell Death Differ. 2017 Jan;24(1):181-191. doi: 10.1038/cdd.2016.130. Epub 2016 Nov 11.

24.

Fat and vitamin intakes during pregnancy have stronger relations with a pro-inflammatory maternal microbiota than does carbohydrate intake.

Mandal S, Godfrey KM, McDonald D, Treuren WV, Bjørnholt JV, Midtvedt T, Moen B, Rudi K, Knight R, Brantsæter AL, Peddada SD, Eggesbø M.

Microbiome. 2016 Oct 19;4(1):55.

25.

Order restricted inference for oscillatory systems for detecting rhythmic signals.

Larriba Y, Rueda C, Fernández MA, Peddada SD.

Nucleic Acids Res. 2016 Dec 15;44(22):e163. Epub 2016 Sep 4.

26.

DNA Methylation Score as a Biomarker in Newborns for Sustained Maternal Smoking during Pregnancy.

Reese SE, Zhao S, Wu MC, Joubert BR, Parr CL, Håberg SE, Ueland PM, Nilsen RM, Midttun Ø, Vollset SE, Peddada SD, Nystad W, London SJ.

Environ Health Perspect. 2017 Apr;125(4):760-766. doi: 10.1289/EHP333. Epub 2016 Jun 21.

27.

Chemical Exacerbation of Light-induced Retinal Degeneration in F344/N Rats in National Toxicology Program Rodent Bioassays.

Yamashita H, Hoenerhoff MJ, Peddada SD, Sills RC, Pandiri AR.

Toxicol Pathol. 2016 Aug;44(6):892-903. doi: 10.1177/0192623316650050. Epub 2016 May 26.

28.

Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice.

Reber SO, Siebler PH, Donner NC, Morton JT, Smith DG, Kopelman JM, Lowe KR, Wheeler KJ, Fox JH, Hassell JE Jr, Greenwood BN, Jansch C, Lechner A, Schmidt D, Uschold-Schmidt N, Füchsl AM, Langgartner D, Walker FR, Hale MW, Lopez Perez G, Van Treuren W, González A, Halweg-Edwards AL, Fleshner M, Raison CL, Rook GA, Peddada SD, Knight R, Lowry CA.

Proc Natl Acad Sci U S A. 2016 May 31;113(22):E3130-9. doi: 10.1073/pnas.1600324113. Epub 2016 May 16.

29.

Circular piecewise regression with applications to cell-cycle data.

Rueda C, Fernández MA, Barragán S, Mardia KV, Peddada SD.

Biometrics. 2016 Dec;72(4):1266-1274. doi: 10.1111/biom.12512. Epub 2016 Mar 17.

30.

SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells.

Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B.

Elife. 2016 Mar 7;5:e10647. doi: 10.7554/eLife.10647.

31.

A multiple testing procedure for multi-dimensional pairwise comparisons with application to gene expression studies.

Grandhi A, Guo W, Peddada SD.

BMC Bioinformatics. 2016 Feb 25;17:104. doi: 10.1186/s12859-016-0937-5.

32.

Maternal plasma folate impacts differential DNA methylation in an epigenome-wide meta-analysis of newborns.

Joubert BR, den Dekker HT, Felix JF, Bohlin J, Ligthart S, Beckett E, Tiemeier H, van Meurs JB, Uitterlinden AG, Hofman A, Håberg SE, Reese SE, Peters MJ, Andreassen BK, Steegers EA, Nilsen RM, Vollset SE, Midttun Ø, Ueland PM, Franco OH, Dehghan A, de Jongste JC, Wu MC, Wang T, Peddada SD, Jaddoe VW, Nystad W, Duijts L, London SJ.

Nat Commun. 2016 Feb 10;7:10577. doi: 10.1038/ncomms10577.

33.

Renal Cell Carcinomas in Vinylidene Chloride-exposed Male B6C3F1 Mice Are Characterized by Oxidative Stress and TP53 Pathway Dysregulation.

Hayes SA, Pandiri AR, Ton TV, Hong HH, Clayton NP, Shockley KR, Peddada SD, Gerrish K, Wyde M, Sills RC, Hoenerhoff MJ.

Toxicol Pathol. 2016 Jan;44(1):71-87. doi: 10.1177/0192623315610820. Epub 2015 Dec 17.

34.

Uterine Carcinomas in Tetrabromobisphenol A-exposed Wistar Han Rats Harbor Increased Tp53 Mutations and Mimic High-grade Type I Endometrial Carcinomas in Women.

Harvey JB, Osborne TS, Hong HH, Bhusari S, Ton TV, Pandiri AR, Masinde T, Dunnick J, Peddada S, Elmore S, Hoenerhoff MJ.

Toxicol Pathol. 2015 Dec;43(8):1103-13. doi: 10.1177/0192623315599256. Epub 2015 Sep 8.

35.

Genomic Profiling Reveals Unique Molecular Alterations in Hepatoblastomas and Adjacent Hepatocellular Carcinomas in B6C3F1 Mice.

Bhusari S, Pandiri AR, Nagai H, Wang Y, Foley J, Hong HH, Ton TV, DeVito M, Shockley KR, Peddada SD, Gerrish KE, Malarkey DE, Hooth MJ, Sills RC, Hoenerhoff MJ.

Toxicol Pathol. 2015 Dec;43(8):1114-26. doi: 10.1177/0192623315599853. Epub 2015 Aug 18.

36.

Determination of Temporal Order among the Components of an Oscillatory System.

Barragán S, Rueda C, Fernández MA, Peddada SD.

PLoS One. 2015 Jul 7;10(7):e0124842. doi: 10.1371/journal.pone.0124842. eCollection 2015.

37.

Analysis of composition of microbiomes: a novel method for studying microbial composition.

Mandal S, Van Treuren W, White RA, Eggesbø M, Knight R, Peddada SD.

Microb Ecol Health Dis. 2015 May 29;26:27663. doi: 10.3402/mehd.v26.27663. eCollection 2015.

38.

Potential sex differences in nonmotor symptoms in early drug-naive Parkinson disease.

Liu R, Umbach DM, Peddada SD, Xu Z, Tröster AI, Huang X, Chen H.

Neurology. 2015 May 26;84(21):2107-15. doi: 10.1212/WNL.0000000000001609. Epub 2015 Apr 29.

39.

F344/NTac Rats Chronically Exposed to Bromodichloroacetic Acid Develop Mammary Adenocarcinomas With Mixed Luminal/Basal Phenotype and Tgfβ Dysregulation.

Harvey JB, Hong HH, Bhusari S, Ton TV, Wang Y, Foley JF, Peddada SD, Hooth M, DeVito M, Nyska A, Pandiri AR, Hoenerhoff MJ.

Vet Pathol. 2016 Jan;53(1):170-81. doi: 10.1177/0300985815571680. Epub 2015 Mar 2.

PMID:
25732176
40.

Meta-analyses on prevalence of selected Parkinson's nonmotor symptoms before and after diagnosis.

Chen H, Zhao EJ, Zhang W, Lu Y, Liu R, Huang X, Ciesielski-Jones AJ, Justice MA, Cousins DS, Peddada S.

Transl Neurodegener. 2015 Jan 8;4(1):1. doi: 10.1186/2047-9158-4-1. eCollection 2015.

41.

Biomarkers of oxidative stress study VI. Endogenous plasma antioxidants fail as useful biomarkers of endotoxin-induced oxidative stress.

Kadiiska MB, Peddada S, Herbert RA, Basu S, Hensley K, Jones DP, Hatch GE, Mason RP.

Free Radic Biol Med. 2015 Apr;81:100-6. doi: 10.1016/j.freeradbiomed.2015.01.006. Epub 2015 Jan 19.

42.

Mixed directional false discovery rate control in multiple pairwise comparisons using weighted p-values.

Zhao H, Peddada SD, Cui X.

Biom J. 2015 Jan;57(1):144-58. doi: 10.1002/bimj.201300242. Epub 2014 Nov 20.

PMID:
25410394
43.

Individual and joint prevalence of three nonmotor symptoms of PD in the US general population.

Chen H, Huang X, Guo X, Peddada S.

Mov Disord. 2014 Sep;29(10):1316-9. doi: 10.1002/mds.25950. Epub 2014 Jul 1.

44.
45.

Gene expression of mesothelioma in vinylidene chloride-exposed F344/N rats reveal immune dysfunction, tissue damage, and inflammation pathways.

Blackshear PE, Pandiri AR, Nagai H, Bhusari S, Hong HH, Ton TV, Clayton NP, Wyde M, Shockley KR, Peddada SD, Gerrish KE, Sills RC, Hoenerhoff MJ.

Toxicol Pathol. 2015 Feb;43(2):171-85. doi: 10.1177/0192623314537885. Epub 2014 Jun 23.

46.

Intraobserver variability in fibroid size measurements: estimated effects on assessing fibroid growth.

Moshesh M, Peddada SD, Cooper T, Baird D.

J Ultrasound Med. 2014 Jul;33(7):1217-24. doi: 10.7863/ultra.33.7.1217.

47.

Maternal smoking and DNA methylation in newborns: in utero effect or epigenetic inheritance?

Joubert BR, Håberg SE, Bell DA, Nilsen RM, Vollset SE, Midttun O, Ueland PM, Wu MC, Nystad W, Peddada SD, London SJ.

Cancer Epidemiol Biomarkers Prev. 2014 Jun;23(6):1007-17. doi: 10.1158/1055-9965.EPI-13-1256. Epub 2014 Apr 16.

48.

Neonatal genome-wide methylation patterns in relation to birth weight in the Norwegian Mother and Child Cohort.

Engel SM, Joubert BR, Wu MC, Olshan AF, Håberg SE, Ueland PM, Nystad W, Nilsen RM, Vollset SE, Peddada SD, London SJ.

Am J Epidemiol. 2014 Apr 1;179(7):834-42. doi: 10.1093/aje/kwt433. Epub 2014 Feb 20.

49.

Linear mixed effects models under inequality constraints with applications.

Farnan L, Ivanova A, Peddada SD.

PLoS One. 2014 Jan 21;9(1):e84778. doi: 10.1371/journal.pone.0084778. eCollection 2014.

50.

A systematic assessment of normalization approaches for the Infinium 450K methylation platform.

Wu MC, Joubert BR, Kuan PF, Håberg SE, Nystad W, Peddada SD, London SJ.

Epigenetics. 2014 Feb;9(2):318-29. doi: 10.4161/epi.27119. Epub 2013 Nov 15.

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