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Items: 44

1.

Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda.

Finke A, Mandáková T, Nawaz K, Vu GTH, Novák P, Macas J, Lysak MA, Pecinka A.

Plant J. 2019 May 10. doi: 10.1111/tpj.14380. [Epub ahead of print]

PMID:
31074166
2.

The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development.

Díaz M, Pečinková P, Nowicka A, Baroux C, Sakamoto T, Gandha PY, Jeřábková H, Matsunaga S, Grossniklaus U, Pecinka A.

Plant Cell. 2019 Jul;31(7):1579-1597. doi: 10.1105/tpc.18.00043. Epub 2019 Apr 29.

3.

Corrigendum: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.

Vuolo F, Kierzkowski D, Runions A, Hajheidari M, Mentink RA, Gupta MD, Zhang Z, Vlad D, Wang Y, Pecinka A, Gan X, Hay A, Huijser P, Tsiantis M.

Genes Dev. 2019 Mar 1;33(5-6):377. doi: 10.1101/gad.323733.118. No abstract available.

4.

PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina.

Lazaro A, Zhou Y, Giesguth M, Nawaz K, Bergonzi S, Pecinka A, Coupland G, Albani MC.

J Exp Bot. 2019 Feb 5;70(3):949-961. doi: 10.1093/jxb/ery423.

5.

LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.

Vuolo F, Kierzkowski D, Runions A, Hajheidari M, Mentink RA, Gupta MD, Zhang Z, Vlad D, Wang Y, Pecinka A, Gan X, Hay A, Huijser P, Tsiantis M.

Genes Dev. 2018 Nov 1;32(21-22):1361-1366. doi: 10.1101/gad.318212.118. Epub 2018 Oct 26. Erratum in: Genes Dev. 2019 Mar 1;33(5-6):377.

6.

Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex.

Diaz M, Pecinka A.

Genes (Basel). 2018 Jan 12;9(1). pii: E36. doi: 10.3390/genes9010036. Review.

7.

Analysis of DNA Methylation Content and Patterns in Plants.

Finke A, Rozhon W, Pecinka A.

Methods Mol Biol. 2018;1694:277-298. doi: 10.1007/978-1-4939-7398-9_24.

PMID:
29080174
8.

Epigenetic regulation - contribution to herbicide resistance in weeds?

Markus C, Pecinka A, Karan R, Barney JN, Merotto A Jr.

Pest Manag Sci. 2018 Feb;74(2):275-281. doi: 10.1002/ps.4727. Epub 2017 Nov 1. Review.

PMID:
28888062
9.

Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley.

van Esse GW, Walla A, Finke A, Koornneef M, Pecinka A, von Korff M.

Plant Physiol. 2017 Aug;174(4):2397-2408. doi: 10.1104/pp.17.00108. Epub 2017 Jun 27.

10.

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana.

Willing EM, Piofczyk T, Albert A, Winkler JB, Schneeberger K, Pecinka A.

Nat Commun. 2016 Dec 1;7:13522. doi: 10.1038/ncomms13522.

11.

Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.

Pietzenuk B, Markus C, Gaubert H, Bagwan N, Merotto A, Bucher E, Pecinka A.

Genome Biol. 2016 Oct 11;17(1):209.

12.

Non-random chromosome arrangement in triploid endosperm nuclei.

Baroux C, Pecinka A, Fuchs J, Kreth G, Schubert I, Grossniklaus U.

Chromosoma. 2017 Feb;126(1):115-124. doi: 10.1007/s00412-016-0578-5. Epub 2016 Feb 19.

13.

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.

Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K.

PLoS One. 2015 Sep 18;10(9):e0137391. doi: 10.1371/journal.pone.0137391. eCollection 2015.

14.

Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species.

Cao HX, Schmutzer T, Scholz U, Pecinka A, Schubert I, Vu GT.

Front Microbiol. 2015 Jul 14;6:526. doi: 10.3389/fmicb.2015.00526. eCollection 2015.

15.

Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis.

Liu CH, Finke A, Díaz M, Rozhon W, Poppenberger B, Baubec T, Pecinka A.

Plant Cell. 2015 Jun;27(6):1788-800. doi: 10.1105/tpc.114.135467. Epub 2015 May 28.

16.

Arabidopsis thaliana natural variation reveals connections between UV radiation stress and plant pathogen-like defense responses.

Piofczyk T, Jeena G, Pecinka A.

Plant Physiol Biochem. 2015 Aug;93:34-43. doi: 10.1016/j.plaphy.2015.01.011. Epub 2015 Feb 2.

PMID:
25656510
17.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K.

Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.

PMID:
27246759
18.

Pollen-specific activation of Arabidopsis retrogenes is associated with global transcriptional reprogramming.

Abdelsamad A, Pecinka A.

Plant Cell. 2014 Aug;26(8):3299-313. doi: 10.1105/tpc.114.126011. Epub 2014 Aug 12.

19.

Drugs for plant chromosome and chromatin research.

Pecinka A, Liu CH.

Cytogenet Genome Res. 2014;143(1-3):51-9. doi: 10.1159/000360774. Epub 2014 Mar 28. Review.

PMID:
24685908
20.

Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis.

Baubec T, Finke A, Mittelsten Scheid O, Pecinka A.

EMBO Rep. 2014 Apr;15(4):446-52. doi: 10.1002/embr.201337915. Epub 2014 Feb 20.

21.

Hidden genetic nature of epigenetic natural variation in plants.

Pecinka A, Abdelsamad A, Vu GT.

Trends Plant Sci. 2013 Nov;18(11):625-32. doi: 10.1016/j.tplants.2013.07.005. Epub 2013 Aug 14. Review.

PMID:
23953885
23.

Answer to Wang and Luo, "Polyploidization increases meiotic recombination frequency in Arabidopsis: a close look at statistical modelling and data analysis".

Pecinka A, Levy A, Mittelsten Scheid O.

BMC Biol. 2012 Apr 18;10:31. doi: 10.1186/1741-7007-10-31. No abstract available.

24.

Stress-induced chromatin changes: a critical view on their heritability.

Pecinka A, Mittelsten Scheid O.

Plant Cell Physiol. 2012 May;53(5):801-8. doi: 10.1093/pcp/pcs044. Epub 2012 Mar 28. Review.

25.

Signals of speciation within Arabidopsis thaliana in comparison with its relatives.

Alcázar R, Pecinka A, Aarts MG, Fransz PF, Koornneef M.

Curr Opin Plant Biol. 2012 Apr;15(2):205-11. doi: 10.1016/j.pbi.2012.01.002. Epub 2012 Jan 19. Review.

PMID:
22265228
26.

Polyploidization increases meiotic recombination frequency in Arabidopsis.

Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O.

BMC Biol. 2011 Apr 21;9:24. doi: 10.1186/1741-7007-9-24. Erratum in: BMC Biol. 2012;10:33.

27.

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

Pecinka A, Dinh HQ, Baubec T, Rosa M, Lettner N, Mittelsten Scheid O.

Plant Cell. 2010 Sep;22(9):3118-29. doi: 10.1105/tpc.110.078493. Epub 2010 Sep 28.

28.

Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis.

Baubec T, Dinh HQ, Pecinka A, Rakic B, Rozhon W, Wohlrab B, von Haeseler A, Mittelsten Scheid O.

Plant Cell. 2010 Jan;22(1):34-47. doi: 10.1105/tpc.109.072819. Epub 2010 Jan 22.

29.

Transgenerational stress memory is not a general response in Arabidopsis.

Pecinka A, Rosa M, Schikora A, Berlinger M, Hirt H, Luschnig C, Mittelsten Scheid O.

PLoS One. 2009;4(4):e5202. doi: 10.1371/journal.pone.0005202. Epub 2009 Apr 21.

30.

Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine.

Baubec T, Pecinka A, Rozhon W, Mittelsten Scheid O.

Plant J. 2009 Feb;57(3):542-54. doi: 10.1111/j.1365-313X.2008.03699.x. Epub 2008 Oct 30.

31.

Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei.

Jovtchev G, Watanabe K, Pecinka A, Rosin FM, Mette MF, Lam E, Schubert I.

Chromosoma. 2008 Jun;117(3):267-76. doi: 10.1007/s00412-007-0146-0. Epub 2008 Jan 17.

PMID:
18200447
32.

Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation.

Fischer U, Kuhlmann M, Pecinka A, Schmidt R, Mette MF.

Plant J. 2008 Jan;53(1):1-10. Epub 2007 Oct 27.

33.

The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization.

Baroux C, Pecinka A, Fuchs J, Schubert I, Grossniklaus U.

Plant Cell. 2007 Jun;19(6):1782-94. Epub 2007 Jun 8.

34.

Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata.

Berr A, Pecinka A, Meister A, Kreth G, Fuchs J, Blattner FR, Lysak MA, Schubert I.

Plant J. 2006 Dec;48(5):771-83.

35.

The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants.

Kirik A, Pecinka A, Wendeler E, Reiss B.

Plant Cell. 2006 Oct;18(10):2431-42. Epub 2006 Sep 15.

36.

Nuclear DNA content variation among Central European Koeleria taxa.

Pecinka A, Suchánková P, Lysak MA, Trávnícek B, Dolezel J.

Ann Bot. 2006 Jul;98(1):117-22. Epub 2006 May 12.

37.

Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species.

Lysak MA, Berr A, Pecinka A, Schmidt R, McBreen K, Schubert I.

Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5224-9. Epub 2006 Mar 20.

38.
39.

Sister chromatids are often incompletely aligned in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana.

Schubert V, Klatte M, Pecinka A, Meister A, Jasencakova Z, Schubert I.

Genetics. 2006 Jan;172(1):467-75. Epub 2005 Sep 12.

40.

Tandem repetitive transgenes and fluorescent chromatin tags alter local interphase chromosome arrangement in Arabidopsis thaliana.

Pecinka A, Kato N, Meister A, Probst AV, Schubert I, Lam E.

J Cell Sci. 2005 Aug 15;118(Pt 16):3751-8. Epub 2005 Aug 2.

41.

Chromosome triplication found across the tribe Brassiceae.

Lysak MA, Koch MA, Pecinka A, Schubert I.

Genome Res. 2005 Apr;15(4):516-25. Epub 2005 Mar 21.

42.

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.

Pecinka A, Schubert V, Meister A, Kreth G, Klatte M, Lysak MA, Fuchs J, Schubert I.

Chromosoma. 2004 Nov;113(5):258-69. Epub 2004 Oct 9.

PMID:
15480725
43.

DNA damage processing and aberration formation in plants.

Schubert I, Pecinka A, Meister A, Schubert V, Klatte M, Jovtchev G.

Cytogenet Genome Res. 2004;104(1-4):104-8. Review.

PMID:
15162022
44.

Recent progress in chromosome painting of Arabidopsis and related species.

Lysak MA, Pecinka A, Schubert I.

Chromosome Res. 2003;11(3):195-204.

PMID:
12769287

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