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Items: 1 to 50 of 446

1.

Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes.

Raven KE, Ludden C, Gouliouris T, Blane B, Naydenova P, Brown NM, Parkhill J, Peacock SJ.

Microb Genom. 2019 May;5(5). doi: 10.1099/mgen.0.000267. Epub 2019 May 20.

2.

'Antibiotic footprint' as a communication tool to aid reduction of antibiotic consumption.

Limmathurotsakul D, Sandoe JAT, Barrett DC, Corley M, Hsu LY, Mendelson M, Collignon P, Laxminarayan R, Peacock SJ, Howard P.

J Antimicrob Chemother. 2019 May 10. pii: dkz185. doi: 10.1093/jac/dkz185. [Epub ahead of print]

3.

Real-world costing analysis for diffuse large B-cell lymphoma in British Columbia.

Costa S, Scott DW, Steidl C, Peacock SJ, Regier DA.

Curr Oncol. 2019 Apr;26(2):108-113. doi: 10.3747/co.26.4565. Epub 2019 Apr 1.

4.

Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory.

Blane B, Raven KE, Leek D, Brown N, Parkhill J, Peacock SJ.

J Antimicrob Chemother. 2019 Apr 30. pii: dkz170. doi: 10.1093/jac/dkz170. [Epub ahead of print]

PMID:
31039248
5.

Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection.

McNally A, Kallonen T, Connor C, Abudahab K, Aanensen DM, Horner C, Peacock SJ, Parkhill J, Croucher NJ, Corander J.

MBio. 2019 Apr 23;10(2). pii: e00644-19. doi: 10.1128/mBio.00644-19.

6.

Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex.

Loiseau C, Brites D, Moser I, Coll F, Pourcel C, Robbe-Austerman S, Escuyer V, Musser KA, Peacock SJ, Feuerriegel S, Kohl TA, Niemann S, Gagneux S, Köser CU.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e00159-19. doi: 10.1128/AAC.00159-19. Print 2019 Jun.

7.

Genome Sequencing of Polydrug-, Multidrug-, and Extensively Drug-Resistant Mycobacterium tuberculosis Strains from South India.

Shanmugam S, Kumar N, Nair D, Natrajan M, Tripathy SP, Peacock SJ, Swaminathan S, Ranganathan UD.

Microbiol Resour Announc. 2019 Mar 21;8(12). pii: e01388-18. doi: 10.1128/MRA.01388-18.

8.

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment.

Gouliouris T, Raven KE, Moradigaravand D, Ludden C, Coll F, Blane B, Naydenova P, Horner C, Brown NM, Corander J, Limmathurotsakul D, Parkhill J, Peacock SJ.

Genome Res. 2019 Apr;29(4):626-634. doi: 10.1101/gr.232629.117. Epub 2019 Mar 21.

9.

Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory.

Raven KE, Blane B, Leek D, Churcher C, Kokko-Gonzales P, Pugazhendhi D, Fraser L, Betley J, Parkhill J, Peacock SJ.

J Clin Microbiol. 2019 May 24;57(6). pii: e00180-19. doi: 10.1128/JCM.00180-19. Print 2019 Jun.

10.

A One Health study of the genetic relatedness of Klebsiella pneumoniae and their mobile elements in the East of England.

Ludden C, Moradigaravand D, Jamrozy D, Gouliouris T, Blane B, Naydenova P, Hernandez-Garcia J, Wood P, Hadjirin N, Radakovic M, Crawley C, Brown NM, Holmes M, Parkhill J, Peacock SJ.

Clin Infect Dis. 2019 Mar 7. pii: ciz174. doi: 10.1093/cid/ciz174. [Epub ahead of print]

PMID:
30840764
11.

Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013.

Toleman MS, Reuter S, Jamrozy D, Wilson HJ, Blane B, Harrison EM, Coll F, Hope RJ, Kearns A, Parkhill J, Peacock SJ, Török ME.

Euro Surveill. 2019 Jan;24(4). doi: 10.2807/1560-7917.ES.2019.24.4.1800215.

12.

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock.

Ludden C, Raven KE, Jamrozy D, Gouliouris T, Blane B, Coll F, de Goffau M, Naydenova P, Horner C, Hernandez-Garcia J, Wood P, Hadjirin N, Radakovic M, Brown NM, Holmes M, Parkhill J, Peacock SJ.

MBio. 2019 Jan 22;10(1). pii: e02693-18. doi: 10.1128/mBio.02693-18.

13.

Molecular epidemiology and expression of capsular polysaccharides in Staphylococcus aureus clinical isolates in the United States.

Mohamed N, Timofeyeva Y, Jamrozy D, Rojas E, Hao L, Silmon de Monerri NC, Hawkins J, Singh G, Cai B, Liberator P, Sebastian S, Donald RGK, Scully IL, Jones CH, Creech CB, Thomsen I, Parkhill J, Peacock SJ, Jansen KU, Holden MTG, Anderson AS.

PLoS One. 2019 Jan 14;14(1):e0208356. doi: 10.1371/journal.pone.0208356. eCollection 2019.

14.

Harnessing alternative sources of antimicrobial resistance data to support surveillance in low-resource settings.

Ashley EA, Shetty N, Patel J, van Doorn R, Limmathurotsakul D, Feasey NA, Okeke IN, Peacock SJ.

J Antimicrob Chemother. 2019 Mar 1;74(3):541-546. doi: 10.1093/jac/dky487.

15.

Nasal carriage of Staphylococcus pseudintermedius in patients with granulomatosis with polyangiitis.

Kronbichler A, Blane B, Holmes MA, Wagner J, Parkhill J, Peacock SJ, Jayne DRW, Harrison EM.

Rheumatology (Oxford). 2018 Nov 8. doi: 10.1093/rheumatology/key317. [Epub ahead of print] No abstract available.

16.

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom.

Gouliouris T, Raven KE, Ludden C, Blane B, Corander J, Horner CS, Hernandez-Garcia J, Wood P, Hadjirin NF, Radakovic M, Holmes MA, de Goffau M, Brown NM, Parkhill J, Peacock SJ.

MBio. 2018 Nov 6;9(6). pii: e01780-18. doi: 10.1128/mBio.01780-18.

17.

Correction to: Detecting eukaryotic microbiota with single-cell sensitivity in human tissue.

Lager S, de Goffau MC, Sovio U, Peacock SJ, Parkhill J, Stephen Charnock-Jones D, Smith GCS.

Microbiome. 2018 Oct 20;6(1):188. doi: 10.1186/s40168-018-0576-3.

18.

Detecting eukaryotic microbiota with single-cell sensitivity in human tissue.

Lager S, de Goffau MC, Sovio U, Peacock SJ, Parkhill J, Charnock-Jones DS, Smith GCS.

Microbiome. 2018 Sep 1;6(1):151. doi: 10.1186/s40168-018-0529-x. Erratum in: Microbiome. 2018 Oct 20;6(1):188.

19.

Correction to: Temperature-dependent development and freezing survival of protostrongylid nematodes of Arctic ungulates: implications for transmission.

Kafle P, Peacock SJ, Grond S, Orsel K, Kutz S.

Parasit Vectors. 2018 Aug 2;11(1):446. doi: 10.1186/s13071-018-3029-8.

20.

Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis".

Köser CU, Heyckendorf J, Andres S, Olaru ID, Schön T, Sturegård E, Beckert P, Schleusener V, Kohl TA, Hillemann D, Moradigaravand D, Parkhill J, Peacock SJ, Niemann S, Lange C, Merker M.

Antimicrob Agents Chemother. 2018 Jul 27;62(8). pii: e00616-18. doi: 10.1128/AAC.00616-18. Print 2018 Aug. No abstract available.

21.

Changing the paradigm for hospital outbreak detection by leading with genomic surveillance of nosocomial pathogens.

Peacock SJ, Parkhill J, Brown NM.

Microbiology. 2018 Oct;164(10):1213-1219. doi: 10.1099/mic.0.000700. Epub 2018 Jul 27.

22.

Recognizing the reagent microbiome.

de Goffau MC, Lager S, Salter SJ, Wagner J, Kronbichler A, Charnock-Jones DS, Peacock SJ, Smith GCS, Parkhill J.

Nat Microbiol. 2018 Aug;3(8):851-853. doi: 10.1038/s41564-018-0202-y. No abstract available.

PMID:
30046175
23.

Gene exchange drives the ecological success of a multi-host bacterial pathogen.

Richardson EJ, Bacigalupe R, Harrison EM, Weinert LA, Lycett S, Vrieling M, Robb K, Hoskisson PA, Holden MTG, Feil EJ, Paterson GK, Tong SYC, Shittu A, van Wamel W, Aanensen DM, Parkhill J, Peacock SJ, Corander J, Holmes M, Fitzgerald JR.

Nat Ecol Evol. 2018 Sep;2(9):1468-1478. doi: 10.1038/s41559-018-0617-0. Epub 2018 Jul 23.

24.

Naturally occurring polymorphisms in the virulence regulator Rsp modulate Staphylococcus aureus survival in blood and antibiotic susceptibility.

Krishna A, Holden MTG, Peacock SJ, Edwards AM, Wigneshweraraj S.

Microbiology. 2018 Sep;164(9):1189-1195. doi: 10.1099/mic.0.000695. Epub 2018 Jul 20.

25.

Temperature-dependent development and freezing survival of protostrongylid nematodes of Arctic ungulates: implications for transmission.

Kafle P, Peacock SJ, Grond S, Orsel K, Kutz S.

Parasit Vectors. 2018 Jul 9;11(1):400. doi: 10.1186/s13071-018-2946-x. Erratum in: Parasit Vectors. 2018 Aug 2;11(1):446.

26.

Effect of temperature on Burkholderia pseudomallei growth, proteomic changes, motility and resistance to stress environments.

Paksanont S, Sintiprungrat K, Yimthin T, Pumirat P, Peacock SJ, Chantratita N.

Sci Rep. 2018 Jun 15;8(1):9167. doi: 10.1038/s41598-018-27356-7.

27.

Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC): Supporting the transition from strategy to action.

Fukuda K, Limmathurotsakul D, Okeke IN, Shetty N, van Doorn R, Feasey NA, Chiara F, Zoubiane G, Jinks T, Parkhill J, Patel J, Reid SWJ, Holmes AH, Peacock SJ; Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC).

Wellcome Open Res. 2018 May 16;3:59. doi: 10.12688/wellcomeopenres.14586.2. eCollection 2018.

28.

Reply to Ruff, Warden, and Karlson.

Peacock SJ, Garland T Jr, Middleton KM.

Am J Phys Anthropol. 2018 Sep;167(1):190-193. doi: 10.1002/ajpa.23614. Epub 2018 Jun 14. No abstract available.

PMID:
29900531
29.

Author Correction: Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis.

Baddam R, Kumar N, Wieler LH, Lankapalli AK, Ahmed N, Peacock SJ, Semmler T.

Sci Rep. 2018 May 15;8(1):7892. doi: 10.1038/s41598-018-25809-7.

30.

Trade-offs, fairness, and funding for cancer drugs: key findings from a deliberative public engagement event in British Columbia, Canada.

Bentley C, Costa S, Burgess MM, Regier D, McTaggart-Cowan H, Peacock SJ.

BMC Health Serv Res. 2018 May 8;18(1):339. doi: 10.1186/s12913-018-3117-7.

31.

Are commercial providers a viable option for clinical bacterial sequencing?

Raven K, Blane B, Churcher C, Parkhill J, Peacock SJ.

Microb Genom. 2018 Apr;4(4). doi: 10.1099/mgen.0.000173. Epub 2018 Apr 5.

32.

Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study.

Gouliouris T, Warne B, Cartwright EJP, Bedford L, Weerasuriya CK, Raven KE, Brown NM, Török ME, Limmathurotsakul D, Peacock SJ.

J Antimicrob Chemother. 2018 Jun 1;73(6):1692-1699. doi: 10.1093/jac/dky075.

33.

Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis.

Baddam R, Kumar N, Wieler LH, Lankapalli AK, Ahmed N, Peacock SJ, Semmler T.

Sci Rep. 2018 Mar 15;8(1):4628. doi: 10.1038/s41598-018-22883-9. Erratum in: Sci Rep. 2018 May 15;8(1):7892.

34.

Melioidosis.

Wiersinga WJ, Virk HS, Torres AG, Currie BJ, Peacock SJ, Dance DAB, Limmathurotsakul D.

Nat Rev Dis Primers. 2018 Feb 1;4:17107. doi: 10.1038/nrdp.2017.107. Review.

35.

Presence of B. thailandensis and B. thailandensis expressing B. pseudomallei-like capsular polysaccharide in Thailand, and their associations with serological response to B. pseudomallei.

Hantrakun V, Thaipadungpanit J, Rongkard P, Srilohasin P, Amornchai P, Langla S, Mukaka M, Chantratita N, Wuthiekanun V, Dance DAB, Day NPJ, Peacock SJ, Limmathurotsakul D.

PLoS Negl Trop Dis. 2018 Jan 24;12(1):e0006193. doi: 10.1371/journal.pntd.0006193. eCollection 2018 Jan.

36.

Macroparasite dynamics of migratory host populations.

Peacock SJ, Bouhours J, Lewis MA, Molnár PK.

Theor Popul Biol. 2018 Mar;120:29-41. doi: 10.1016/j.tpb.2017.12.005. Epub 2018 Jan 6.

PMID:
29317230
37.

An asymmetric producer-scrounger game: body size and the social foraging behavior of coho salmon.

Phillips JA, Peacock SJ, Bateman A, Bartlett M, Lewis MA, Krkošek M.

Theor Ecol. 2018;11(4):417-431. doi: 10.1007/s12080-018-0375-2. Epub 2018 May 1.

38.

Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients.

Moradigaravand D, Gouliouris T, Blane B, Naydenova P, Ludden C, Crawley C, Brown NM, Török ME, Parkhill J, Peacock SJ.

Genome Med. 2017 Dec 27;9(1):119. doi: 10.1186/s13073-017-0507-0.

39.

Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru.

Grandjean L, Gilman RH, Iwamoto T, Köser CU, Coronel J, Zimic M, Török ME, Ayabina D, Kendall M, Fraser C, Harris S, Parkhill J, Peacock SJ, Moore DAJ, Colijn C.

PLoS One. 2017 Dec 27;12(12):e0189838. doi: 10.1371/journal.pone.0189838. eCollection 2017.

40.

Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection.

Raven KE, Gouliouris T, Parkhill J, Peacock SJ.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01520-17. doi: 10.1128/JCM.01520-17. Print 2018 Mar.

41.

Predicting the bending properties of long bones: Insights from an experimental mouse model.

Peacock SJ, Coats BR, Kirkland JK, Tanner CA, Garland T Jr, Middleton KM.

Am J Phys Anthropol. 2018 Mar;165(3):457-470. doi: 10.1002/ajpa.23363. Epub 2017 Nov 20.

42.

What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis.

Heyckendorf J, Andres S, Köser CU, Olaru ID, Schön T, Sturegård E, Beckert P, Schleusener V, Kohl TA, Hillemann D, Moradigaravand D, Parkhill J, Peacock SJ, Niemann S, Lange C, Merker M.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e01550-17. doi: 10.1128/AAC.01550-17. Print 2018 Feb.

43.

Streptococcus bovimastitidis sp. nov., isolated from a dairy cow with mastitis.

de Vries SPW, Hadjirin NF, Lay EM, Zadoks RN, Peacock SJ, Parkhill J, Grant AJ, McDougall S, Holmes MA.

Int J Syst Evol Microbiol. 2018 Jan;68(1):21-27. doi: 10.1099/ijsem.0.002321. Epub 2017 Nov 3.

PMID:
29099353
44.

Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting.

Toleman MS, Watkins ER, Williams T, Blane B, Sadler B, Harrison EM, Coll F, Parkhill J, Nazareth B, Brown NM, Peacock SJ.

Clin Infect Dis. 2017 Nov 29;65(12):2069-2077. doi: 10.1093/cid/cix539.

45.

Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community.

Coll F, Harrison EM, Toleman MS, Reuter S, Raven KE, Blane B, Palmer B, Kappeler ARM, Brown NM, Török ME, Parkhill J, Peacock SJ.

Sci Transl Med. 2017 Oct 25;9(413). pii: eaak9745. doi: 10.1126/scitranslmed.aak9745. Epub 2017 Oct 25.

46.

AMR Surveillance in low and middle-income settings - A roadmap for participation in the Global Antimicrobial Surveillance System (GLASS).

Seale AC, Gordon NC, Islam J, Peacock SJ, Scott JAG.

Wellcome Open Res. 2017 Sep 26;2:92. doi: 10.12688/wellcomeopenres.12527.1. eCollection 2017.

47.

Participant selection for lung cancer screening by risk modelling (the Pan-Canadian Early Detection of Lung Cancer [PanCan] study): a single-arm, prospective study.

Tammemagi MC, Schmidt H, Martel S, McWilliams A, Goffin JR, Johnston MR, Nicholas G, Tremblay A, Bhatia R, Liu G, Soghrati K, Yasufuku K, Hwang DM, Laberge F, Gingras M, Pasian S, Couture C, Mayo JR, Nasute Fauerbach PV, Atkar-Khattra S, Peacock SJ, Cressman S, Ionescu D, English JC, Finley RJ, Yee J, Puksa S, Stewart L, Tsai S, Haider E, Boylan C, Cutz JC, Manos D, Xu Z, Goss GD, Seely JM, Amjadi K, Sekhon HS, Burrowes P, MacEachern P, Urbanski S, Sin DD, Tan WC, Leighl NB, Shepherd FA, Evans WK, Tsao MS, Lam S; PanCan Study Team.

Lancet Oncol. 2017 Nov;18(11):1523-1531. doi: 10.1016/S1470-2045(17)30597-1. Epub 2017 Oct 18.

PMID:
29055736
48.

Whole-genome sequencing to investigate a non-clonal melioidosis cluster on a remote Australian island.

Sarovich DS, Chapple SNJ, Price EP, Mayo M, Holden MTG, Peacock SJ, Currie BJ.

Microb Genom. 2017 Jun 13;3(8):e000117. doi: 10.1099/mgen.0.000117. eCollection 2017 Aug.

49.

Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing.

Ludden C, Reuter S, Judge K, Gouliouris T, Blane B, Coll F, Naydenova P, Hunt M, Tracey A, Hopkins KL, Brown NM, Woodford N, Parkhill J, Peacock SJ.

Microb Genom. 2017 Jul 4;3(7):e000114. doi: 10.1099/mgen.0.000114. eCollection 2017 Jul.

50.

Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns.

Donker T, Reuter S, Scriberras J, Reynolds R, Brown NM, Török ME, James R, Network EOEMR, Aanensen DM, Bentley SD, Holden MTG, Parkhill J, Spratt BG, Peacock SJ, Feil EJ, Grundmann H.

Microb Genom. 2017 Jul 4;3(7):e000113. doi: 10.1099/mgen.0.000113. eCollection 2017 Jul.

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