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Items: 42

1.

Structural Equation Modeling and Whole-Genome Scans Uncover Chromosome Regions and Enriched Pathways for Carcass and Meat Quality in Beef.

Leal-Gutiérrez JD, Rezende FM, Elzo MA, Johnson D, Peñagaricano F, Mateescu RG.

Front Genet. 2018 Nov 13;9:532. doi: 10.3389/fgene.2018.00532. eCollection 2018.

2.

Gene Mapping and Gene-Set Analysis for Milk Fever Incidence in Holstein Dairy Cattle.

Pacheco HA, da Silva S, Sigdel A, Mak CK, Galvão KN, Texeira RA, Dias LT, Peñagaricano F.

Front Genet. 2018 Oct 10;9:465. doi: 10.3389/fgene.2018.00465. eCollection 2018.

3.

In Utero Heat Stress Alters the Offspring Epigenome.

Skibiel AL, Peñagaricano F, Amorín R, Ahmed BM, Dahl GE, Laporta J.

Sci Rep. 2018 Oct 2;8(1):14609. doi: 10.1038/s41598-018-32975-1.

4.

Genetic dissection of bull fertility in US Jersey dairy cattle.

Rezende FM, Dietsch GO, Peñagaricano F.

Anim Genet. 2018 Oct;49(5):393-402. doi: 10.1111/age.12710. Epub 2018 Aug 14.

5.

Comparison of transcriptomic landscapes of different lamb muscles using RNA-Seq.

Armstrong E, Iriarte A, Nicolini P, De Los Santos J, Ithurralde J, Bielli A, Bianchi G, Peñagaricano F.

PLoS One. 2018 Jul 24;13(7):e0200732. doi: 10.1371/journal.pone.0200732. eCollection 2018.

6.

RNA-Seq reveals novel genes and pathways involved in bovine mammary involution during the dry period and under environmental heat stress.

Dado-Senn B, Skibiel AL, Fabris TF, Zhang Y, Dahl GE, Peñagaricano F, Laporta J.

Sci Rep. 2018 Jul 23;8(1):11096. doi: 10.1038/s41598-018-29420-8.

7.

Genetic parameter estimation for long endurance trials in the Uruguayan Criollo horse.

López-Correa RD, Peñagaricano F, Rovere G, Urioste JI.

J Anim Breed Genet. 2018 Jun;135(3):186-193. doi: 10.1111/jbg.12324. Epub 2018 May 7.

PMID:
29732622
8.

Whole-genome scan reveals significant non-additive effects for sire conception rate in Holstein cattle.

Nicolini P, Amorín R, Han Y, Peñagaricano F.

BMC Genet. 2018 Feb 27;19(1):14. doi: 10.1186/s12863-018-0600-4.

9.

Integrative analysis of methylomic and transcriptomic data in fetal sheep muscle tissues in response to maternal diet during pregnancy.

Namous H, Peñagaricano F, Del Corvo M, Capra E, Thomas DL, Stella A, Williams JL, Marsan PA, Khatib H.

BMC Genomics. 2018 Feb 6;19(1):123. doi: 10.1186/s12864-018-4509-0.

10.

Mechanisms for rescue of corpus luteum during pregnancy: gene expression in bovine corpus luteum following intrauterine pulses of prostaglandins E1 and F2α.

Ochoa JC, Peñagaricano F, Baez GM, Melo LF, Motta JCL, Garcia-Guerra A, Meidan R, Pinheiro Ferreira JC, Sartori R, Wiltbank MC.

Biol Reprod. 2018 Apr 1;98(4):465-479. doi: 10.1093/biolre/iox183.

PMID:
29293919
11.

Predicting bull fertility using genomic data and biological information.

Abdollahi-Arpanahi R, Morota G, Peñagaricano F.

J Dairy Sci. 2017 Dec;100(12):9656-9666. doi: 10.3168/jds.2017-13288. Epub 2017 Oct 4.

12.

Modelling female fertility traits in beef cattle using linear and non-linear models.

Naya H, Peñagaricano F, Urioste JI.

J Anim Breed Genet. 2017 Jun;134(3):202-212. doi: 10.1111/jbg.12266.

PMID:
28508488
13.

Unravelling the genomic architecture of bull fertility in Holstein cattle.

Han Y, Peñagaricano F.

BMC Genet. 2016 Nov 14;17(1):143.

14.

MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken.

Morota G, Beissinger TM, Peñagaricano F.

G3 (Bethesda). 2016 Aug 9;6(8):2447-53. doi: 10.1534/g3.116.031096.

15.

Genome-wide association mapping and pathway analysis of leukosis incidence in a US Holstein cattle population.

Abdalla EA, Peñagaricano F, Byrem TM, Weigel KA, Rosa GJ.

Anim Genet. 2016 Aug;47(4):395-407. doi: 10.1111/age.12438. Epub 2016 Apr 19.

PMID:
27090879
16.

Genetic parameters of objectionable fibers and of their associations with fleece traits in Corriedale sheep.

Sánchez AL, Urioste JI, Peñagaricano F, Neimaur K, Sienra I, Naya H, Kremer R.

J Anim Sci. 2016 Jan;94(1):13-20. doi: 10.2527/jas.2015-9619.

PMID:
26812307
17.

Searching for causal networks involving latent variables in complex traits: Application to growth, carcass, and meat quality traits in pigs.

Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ.

J Anim Sci. 2015 Oct;93(10):4617-23. doi: 10.2527/jas.2015-9213.

PMID:
26523553
18.

Transcriptomic Analysis of the Mouse Mammary Gland Reveals New Insights for the Role of Serotonin in Lactation.

Laporta J, Peñagaricano F, Hernandez LL.

PLoS One. 2015 Oct 15;10(10):e0140425. doi: 10.1371/journal.pone.0140425. eCollection 2015.

19.

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data.

Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ.

BMC Syst Biol. 2015 Sep 16;9:58. doi: 10.1186/s12918-015-0207-6.

20.

Increasing serotonin concentrations alter calcium and energy metabolism in dairy cows.

Laporta J, Moore SA, Weaver SR, Cronick CM, Olsen M, Prichard AP, Schnell BP, Crenshaw TD, Peñagaricano F, Bruckmaier RM, Hernandez LL.

J Endocrinol. 2015 Jul;226(1):43-55. doi: 10.1530/JOE-14-0693.

PMID:
26099356
21.

An application of MeSH enrichment analysis in livestock.

Morota G, Peñagaricano F, Petersen JL, Ciobanu DC, Tsuyuzaki K, Nikaido I.

Anim Genet. 2015 Aug;46(4):381-7. doi: 10.1111/age.12307. Epub 2015 Jun 2.

22.

The Causal Meaning of Genomic Predictors and How It Affects Construction and Comparison of Genome-Enabled Selection Models.

Valente BD, Morota G, Peñagaricano F, Gianola D, Weigel K, Rosa GJ.

Genetics. 2015 Jun;200(2):483-94. doi: 10.1534/genetics.114.169490. Epub 2015 Apr 23.

23.

Maternal nutrition induces gene expression changes in fetal muscle and adipose tissues in sheep.

Peñagaricano F, Wang X, Rosa GJ, Radunz AE, Khatib H.

BMC Genomics. 2014 Nov 28;15:1034. doi: 10.1186/1471-2164-15-1034.

24.

Insights into the maize pan-genome and pan-transcriptome.

Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peñagaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR.

Plant Cell. 2014 Jan;26(1):121-35. doi: 10.1105/tpc.113.119982. Epub 2014 Jan 31.

25.

Invited review: Genetic contributions underlying the development of preimplantation bovine embryos.

Kropp J, Peñagaricano F, Salih SM, Khatib H.

J Dairy Sci. 2014 Mar;97(3):1187-201. doi: 10.3168/jds.2013-7244. Epub 2013 Dec 28. Review.

PMID:
24377798
26.

Effect of maternal methionine supplementation on the transcriptome of bovine preimplantation embryos.

Peñagaricano F, Souza AH, Carvalho PD, Driver AM, Gambra R, Kropp J, Hackbart KS, Luchini D, Shaver RD, Wiltbank MC, Khatib H.

PLoS One. 2013 Aug 21;8(8):e72302. doi: 10.1371/journal.pone.0072302. eCollection 2013.

27.

Knockdown of CDKN1C (p57(kip2)) and PHLDA2 results in developmental changes in bovine pre-implantation embryos.

Driver AM, Huang W, Kropp J, Peñagaricano F, Khatib H.

PLoS One. 2013 Jul 22;8(7):e69490. doi: 10.1371/journal.pone.0069490. Print 2013.

28.

Association of SNP of neuropeptide Y, leptin, and IGF-1 genes with residual feed intake in confinement and under grazing condition in Angus cattle.

Trujillo AI, Casal A, Peñagaricano F, Carriquiry M, Chilibroste P.

J Anim Sci. 2013 Sep;91(9):4235-44. doi: 10.2527/jas.2013-6254. Epub 2013 Jul 23.

PMID:
23881687
29.

Genomic architecture of bovine κ-casein and β-lactoglobulin.

Gambra R, Peñagaricano F, Kropp J, Khateeb K, Weigel KA, Lucey J, Khatib H.

J Dairy Sci. 2013 Aug;96(8):5333-43. doi: 10.3168/jds.2012-6324. Epub 2013 Jun 5.

PMID:
23746586
30.

Maternal Diet during Pregnancy Induces Gene Expression and DNA Methylation Changes in Fetal Tissues in Sheep.

Lan X, Cretney EC, Kropp J, Khateeb K, Berg MA, Peñagaricano F, Magness R, Radunz AE, Khatib H.

Front Genet. 2013 Apr 5;4:49. doi: 10.3389/fgene.2013.00049. eCollection 2013.

31.

Inferring quantitative trait pathways associated with bull fertility from a genome-wide association study.

Peñagaricano F, Weigel KA, Rosa GJ, Khatib H.

Front Genet. 2013 Jan 11;3:307. doi: 10.3389/fgene.2012.00307. eCollection 2012.

32.

Short communication: A missense mutation in the PROP1 (prophet of Pit 1) gene affects male fertility and milk production traits in the US Holstein population.

Lan XY, Peñagaricano F, DeJung L, Weigel KA, Khatib H.

J Dairy Sci. 2013 Feb;96(2):1255-7. doi: 10.3168/jds.2012-6019. Epub 2012 Dec 14.

PMID:
23245960
33.

Novel transcripts and alternatively spliced genes are associated with early development in bovine embryos.

Zhang B, Peñagaricano F, Chen H, Khatib H.

Animal. 2012 Aug;6(8):1199-205. doi: 10.1017/S1751731112000092.

PMID:
23031207
34.

Comparative genomics between fly, mouse, and cattle identifies genes associated with sire conception rate.

Li G, Peñagaricano F, Weigel KA, Zhang Y, Rosa G, Khatib H.

J Dairy Sci. 2012 Oct;95(10):6122-9. doi: 10.3168/jds.2012-5591. Epub 2012 Aug 23.

PMID:
22921614
35.

Genome-wide association study identifies candidate markers for bull fertility in Holstein dairy cattle.

Peñagaricano F, Weigel KA, Khatib H.

Anim Genet. 2012 Jul;43 Suppl 1:65-71. doi: 10.1111/j.1365-2052.2012.02350.x.

PMID:
22742504
36.

RNA-Seq analysis uncovers transcriptomic variations between morphologically similar in vivo- and in vitro-derived bovine blastocysts.

Driver AM, Peñagaricano F, Huang W, Ahmad KR, Hackbart KS, Wiltbank MC, Khatib H.

BMC Genomics. 2012 Mar 28;13:118. doi: 10.1186/1471-2164-13-118.

37.

Short communication: Association of an OLR1 polymorphism with milk production traits in the Israeli Holstein population.

Wang X, Peñagaricano F, Tal-Stein R, Lipkin E, Khatib H.

J Dairy Sci. 2012 Mar;95(3):1565-7. doi: 10.3168/jds.2011-5012.

PMID:
22365237
38.

Association between milk protein gene variants and protein composition traits in dairy cattle.

Huang W, Peñagaricano F, Ahmad KR, Lucey JA, Weigel KA, Khatib H.

J Dairy Sci. 2012 Jan;95(1):440-9. doi: 10.3168/jds.2011-4757.

PMID:
22192223
39.

Association of milk protein genes with fertilization rate and early embryonic development in Holstein dairy cattle.

Peñagaricano F, Khatib H.

J Dairy Res. 2012 Feb;79(1):47-52. doi: 10.1017/S0022029911000744. Epub 2011 Oct 13.

PMID:
22008563
40.

Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep.

Peñagaricano F, Zorrilla P, Naya H, Robello C, Urioste JI.

J Appl Genet. 2012 Feb;53(1):99-106. doi: 10.1007/s13353-011-0066-9. Epub 2011 Sep 28.

PMID:
21952730
41.

Differential expression of heat shock protein genes and their splice variants in bovine preimplantation embryos.

Zhang B, Peñagaricano F, Driver A, Chen H, Khatib H.

J Dairy Sci. 2011 Aug;94(8):4174-82. doi: 10.3168/jds.2010-4137.

PMID:
21787952
42.

Assessment of Poisson, probit and linear models for genetic analysis of presence and number of black spots in Corriedale sheep.

Peñagaricano F, Urioste JI, Naya H, de los Campos G, Gianola D.

J Anim Breed Genet. 2011 Apr;128(2):105-13. doi: 10.1111/j.1439-0388.2010.00893.x. Epub 2010 Dec 22.

PMID:
21385225

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