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Items: 1 to 50 of 53

1.

Niacin prevents mitochondrial oxidative stress caused by sub-chronic exposure to methylmercury.

Pereira LC, de Paula ES, Pazin M, Carneiro MFH, Grotto D, Barbosa F Jr, Dorta DJ.

Drug Chem Toxicol. 2018 Sep 7:1-7. doi: 10.1080/01480545.2018.1497045. [Epub ahead of print]

PMID:
30192646
2.

A perspective of mitochondrial dysfunction in rats treated with silver and titanium nanoparticles (AgNPs and TiNPs).

Pereira LC, Pazin M, Franco-Bernardes MF, Martins ADC Jr, Barcelos GRM, Pereira MC, Mesquita JP, Rodrigues JL, Barbosa F Jr, Dorta DJ.

J Trace Elem Med Biol. 2018 May;47:63-69. doi: 10.1016/j.jtemb.2018.01.007. Epub 2018 Jan 31.

PMID:
29544809
3.

A perspective on the potential risks of emerging contaminants to human and environmental health.

Pereira LC, de Souza AO, Franco Bernardes MF, Pazin M, Tasso MJ, Pereira PH, Dorta DJ.

Environ Sci Pollut Res Int. 2015 Sep;22(18):13800-23. doi: 10.1007/s11356-015-4896-6. Epub 2015 Jul 24. Review.

PMID:
26201652
4.

Using the ENCODE Resource for Functional Annotation of Genetic Variants.

Pazin MJ.

Cold Spring Harb Protoc. 2015 Mar 11;2015(6):522-36. doi: 10.1101/pdb.top084988. Review.

5.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

6.

Toxicity of brominated flame retardants, BDE-47 and BDE-99 stems from impaired mitochondrial bioenergetics.

Pazin M, Pereira LC, Dorta DJ.

Toxicol Mech Methods. 2015 Jan;25(1):34-41. doi: 10.3109/15376516.2014.974233. Epub 2014 Oct 30.

PMID:
25299509
7.

Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos J, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):E3366. No abstract available.

8.

Comparative analysis of regulatory information and circuits across distant species.

Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, Ma L, Niu W, Rehm EJ, Rozowsky J, Slattery M, Spokony R, Terrell R, Vafeados D, Wang D, Weisdepp P, Wu YC, Xie D, Yan KK, Feingold EA, Good PJ, Pazin MJ, Huang H, Bickel PJ, Brenner SE, Reinke V, Waterston RH, Gerstein M, White KP, Kellis M, Snyder M.

Nature. 2014 Aug 28;512(7515):453-6. doi: 10.1038/nature13668.

9.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

10.

Comparative analysis of the transcriptome across distant species.

Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R.

Nature. 2014 Aug 28;512(7515):445-8. doi: 10.1038/nature13424.

11.

Jacobsen catalyst as a cytochrome P450 biomimetic model for the metabolism of monensin A.

Rocha BA, de Oliveira AR, Pazin M, Dorta DJ, Rodrigues AP, Berretta AA, Peti AP, de Moraes LA, Lopes NP, Pospíšil S, Gates PJ, Assis Md.

Biomed Res Int. 2014;2014:152102. doi: 10.1155/2014/152102. Epub 2014 May 28.

12.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

13.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.

14.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418.

15.

IL-10 transcription is negatively regulated by BAF180, a component of the SWI/SNF chromatin remodeling enzyme.

Wurster AL, Precht P, Becker KG, Wood WH 3rd, Zhang Y, Wang Z, Pazin MJ.

BMC Immunol. 2012 Feb 15;13:9. doi: 10.1186/1471-2172-13-9.

16.

ATP-dependent chromatin remodeling in T cells.

Wurster AL, Pazin MJ.

Biochem Cell Biol. 2012 Feb;90(1):1-13. doi: 10.1139/o11-042. Epub 2011 Oct 14. Review.

17.

CHD5, a brain-specific paralog of Mi2 chromatin remodeling enzymes, regulates expression of neuronal genes.

Potts RC, Zhang P, Wurster AL, Precht P, Mughal MR, Wood WH 3rd, Zhang Y, Becker KG, Mattson MP, Pazin MJ.

PLoS One. 2011;6(9):e24515. doi: 10.1371/journal.pone.0024515. Epub 2011 Sep 13.

18.

Nontelomeric splice variant of telomere repeat-binding factor 2 maintains neuronal traits by sequestering repressor element 1-silencing transcription factor.

Zhang P, Casaday-Potts R, Precht P, Jiang H, Liu Y, Pazin MJ, Mattson MP.

Proc Natl Acad Sci U S A. 2011 Sep 27;108(39):16434-9. doi: 10.1073/pnas.1106906108. Epub 2011 Sep 8.

19.

NF-κB and BRG1 bind a distal regulatory element in the IL-3/GM-CSF locus.

Wurster AL, Precht P, Pazin MJ.

Mol Immunol. 2011 Sep;48(15-16):2178-88. doi: 10.1016/j.molimm.2011.07.016. Epub 2011 Aug 9.

20.

Dynamic BRG1 recruitment during T helper differentiation and activation reveals distal regulatory elements.

De S, Wurster AL, Precht P, Wood WH 3rd, Becker KG, Pazin MJ.

Mol Cell Biol. 2011 Apr;31(7):1512-27. doi: 10.1128/MCB.00920-10. Epub 2011 Jan 24.

21.

Molecular changes in brain aging and Alzheimer's disease are mirrored in experimentally silenced cortical neuron networks.

Gleichmann M, Zhang Y, Wood WH 3rd, Becker KG, Mughal MR, Pazin MJ, van Praag H, Kobilo T, Zonderman AB, Troncoso JC, Markesbery WR, Mattson MP.

Neurobiol Aging. 2012 Jan;33(1):205.e1-18. doi: 10.1016/j.neurobiolaging.2010.08.012. Epub 2010 Oct 13.

22.

Activation of heat shock factor 1 plays a role in pyrrolidine dithiocarbamate-mediated expression of the co-chaperone BAG3.

Song S, Kole S, Precht P, Pazin MJ, Bernier M.

Int J Biochem Cell Biol. 2010 Nov;42(11):1856-63. doi: 10.1016/j.biocel.2010.07.021. Epub 2010 Aug 6.

23.

The SNF2H chromatin remodeling enzyme has opposing effects on cytokine gene expression.

Precht P, Wurster AL, Pazin MJ.

Mol Immunol. 2010 Jul;47(11-12):2038-46. doi: 10.1016/j.molimm.2010.04.009. Epub 2010 May 15.

24.

A positive FGFR3/FOXN1 feedback loop underlies benign skin keratosis versus squamous cell carcinoma formation in humans.

Mandinova A, Kolev V, Neel V, Hu B, Stonely W, Lieb J, Wu X, Colli C, Han R, Pazin MJ, Ostano P, Dummer R, Brissette JL, Dotto GP.

J Clin Invest. 2009 Oct;119(10):3127-37. doi: 10.1172/JCI38543. Erratum in: J Clin Invest. 2010 Feb;120(2):6455. Pazin, Mike [corrected to Pazin, Michael J].

25.

Mi2beta shows chromatin enzyme specificity by erasing a DNase I-hypersensitive site established by ACF.

Ishii H, Du H, Zhang Z, Henderson A, Sen R, Pazin MJ.

J Biol Chem. 2009 Mar 20;284(12):7533-41. doi: 10.1074/jbc.M807617200. Epub 2009 Jan 21.

26.

S-glutathionylation impairs signal transducer and activator of transcription 3 activation and signaling.

Xie Y, Kole S, Precht P, Pazin MJ, Bernier M.

Endocrinology. 2009 Mar;150(3):1122-31. doi: 10.1210/en.2008-1241. Epub 2008 Nov 6.

27.

BRG1-mediated chromatin remodeling regulates differentiation and gene expression of T helper cells.

Wurster AL, Pazin MJ.

Mol Cell Biol. 2008 Dec;28(24):7274-85. doi: 10.1128/MCB.00835-08. Epub 2008 Oct 13.

28.

Nontelomeric TRF2-REST interaction modulates neuronal gene silencing and fate of tumor and stem cells.

Zhang P, Pazin MJ, Schwartz CM, Becker KG, Wersto RP, Dilley CM, Mattson MP.

Curr Biol. 2008 Oct 14;18(19):1489-94. doi: 10.1016/j.cub.2008.08.048. Epub 2008 Sep 25.

29.

Activation of 12/23-RSS-dependent RAG cleavage by hSWI/SNF complex in the absence of transcription.

Du H, Ishii H, Pazin MJ, Sen R.

Mol Cell. 2008 Sep 5;31(5):641-9. doi: 10.1016/j.molcel.2008.08.012.

30.

Effects of ceramic thickness and curing unit on light transmission through leucite-reinforced material and polymerization of dual-cured luting agent.

Pazin MC, Moraes RR, Gonçalves LS, Borges GA, Sinhoreti MA, Correr-Sobrinho L.

J Oral Sci. 2008 Jun;50(2):131-6.

31.

Regulation of the CLDN3 gene in ovarian cancer cells.

Honda H, Pazin MJ, D'Souza T, Ji H, Morin PJ.

Cancer Biol Ther. 2007 Nov;6(11):1733-42. Epub 2007 Aug 3.

PMID:
17986852
32.

In vitro transcription using Drosophila nuclear extracts.

Pazin MJ.

CSH Protoc. 2007 Mar 1;2007:pdb.prot4710. doi: 10.1101/pdb.prot4710.

PMID:
21357044
33.

Preparation of nuclear extracts from Drosophila embryos.

Pazin MJ.

CSH Protoc. 2007 Mar 1;2007:pdb.prot4709. doi: 10.1101/pdb.prot4709.

PMID:
21357043
34.

Crucial roles of Sp1 and epigenetic modifications in the regulation of the CLDN4 promoter in ovarian cancer cells.

Honda H, Pazin MJ, Ji H, Wernyj RP, Morin PJ.

J Biol Chem. 2006 Jul 28;281(30):21433-44. Epub 2006 May 19.

35.

Histone H4-K16 acetylation controls chromatin structure and protein interactions.

Shogren-Knaak M, Ishii H, Sun JM, Pazin MJ, Davie JR, Peterson CL.

Science. 2006 Feb 10;311(5762):844-7.

36.
37.
38.
40.

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor.

Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT.

Cell. 1997 Jul 11;90(1):145-55.

41.

What's up and down with histone deacetylation and transcription?

Pazin MJ, Kadonaga JT.

Cell. 1997 May 2;89(3):325-8. Review. No abstract available.

42.

Nucleosome mobility and the maintenance of nucleosome positioning.

Pazin MJ, Bhargava P, Geiduschek EP, Kadonaga JT.

Science. 1997 May 2;276(5313):809-12.

43.

SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions?

Pazin MJ, Kadonaga JT.

Cell. 1997 Mar 21;88(6):737-40. Review. No abstract available.

44.

NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro.

Pazin MJ, Sheridan PL, Cannon K, Cao Z, Keck JG, Kadonaga JT, Jones KA.

Genes Dev. 1996 Jan 1;10(1):37-49.

45.

Activation of the HIV-1 enhancer by the LEF-1 HMG protein on nucleosome-assembled DNA in vitro.

Sheridan PL, Sheline CT, Cannon K, Voz ML, Pazin MJ, Kadonaga JT, Jones KA.

Genes Dev. 1995 Sep 1;9(17):2090-104.

46.

ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates.

Pazin MJ, Kamakaka RT, Kadonaga JT.

Science. 1994 Dec 23;266(5193):2007-11.

PMID:
7801129
47.

Triggering signaling cascades by receptor tyrosine kinases.

Pazin MJ, Williams LT.

Trends Biochem Sci. 1992 Oct;17(10):374-8. Review.

PMID:
1455504
48.
49.

Inability to titrate PEEP in patients with acute respiratory failure using end-tidal carbon dioxide measurements.

Jardin F, Genevray B, Pazin M, Margairaz A.

Anesthesiology. 1985 Apr;62(4):530-3. No abstract available.

PMID:
3920935
50.

[Antithyroid action and molecular structure. IV. Study of pyridinethiones and piperidinethiones].

CHEYMOL J, RENAULT J, PAZIN M.

Arch Int Pharmacodyn Ther. 1953 Mar;93(2):143-7. Undetermined Language. No abstract available.

PMID:
13058501

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