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A protocol to evaluate RNA sequencing normalization methods.

Abrams ZB, Johnson TS, Huang K, Payne PRO, Coombes K.

BMC Bioinformatics. 2019 Dec 20;20(Suppl 24):679. doi: 10.1186/s12859-019-3247-x.


Speed of Rapid Serial Visual Presentation of Pictures, Numbers and Words Affects Event-Related Potential-Based Detection Accuracy.

Lees S, McCullagh P, Payne P, Maguire L, Lotte F, Coyle D.

IEEE Trans Neural Syst Rehabil Eng. 2020 Jan;28(1):113-122. doi: 10.1109/TNSRE.2019.2953975. Epub 2019 Nov 18.


Including Pregnant Women in Clinical Research: Practical Guidance for Institutional Review Boards.

Payne P.

Ethics Hum Res. 2019 Nov;41(6):35-40. doi: 10.1002/eahr.500036.


Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department.

Ahmad FA, Payne PRO, Lackey I, Komeshak R, Kenney K, Magnusen B, Metts C, Bailey T.

J Am Med Inform Assoc. 2019 Nov 13. pii: ocz182. doi: 10.1093/jamia/ocz182. [Epub ahead of print]


CytoGPS: a web-enabled karyotype analysis tool for cytogenetics.

Abrams ZB, Zhang L, Abruzzo LV, Heerema NA, Li S, Dillon T, Rodriguez R, Coombes KR, Payne PRO.

Bioinformatics. 2019 Dec 15;35(24):5365-5366. doi: 10.1093/bioinformatics/btz520.


Synergy from gene expression and network mining (SynGeNet) method predicts synergistic drug combinations for diverse melanoma genomic subtypes.

Regan-Fendt KE, Xu J, DiVincenzo M, Duggan MC, Shakya R, Na R, Carson WE 3rd, Payne PRO, Li F.

NPJ Syst Biol Appl. 2019 Feb 26;5:6. doi: 10.1038/s41540-019-0085-4. eCollection 2019.


Questions for Artificial Intelligence in Health Care.

Maddox TM, Rumsfeld JS, Payne PRO.

JAMA. 2019 Jan 1;321(1):31-32. doi: 10.1001/jama.2018.18932. No abstract available.


The 'full stack' of healthcare innovation skills: combining clinical informatics with care delivery innovation.

Maddox TM, Payne PRO.

Per Med. 2019 Jan;16(1):9-14. doi: 10.2217/pme-2018-0118. Epub 2018 Nov 22. No abstract available.


Are Synthetic Data Derivatives the Future of Translational Medicine?

Foraker R, Mann DL, Payne PRO.

JACC Basic Transl Sci. 2018 Nov 12;3(5):716-718. doi: 10.1016/j.jacbts.2018.08.007. eCollection 2018 Oct. No abstract available.


Digital Delivery of Meditative Movement Training Improved Health of Cigarette-Smoke-Exposed Subjects.

Payne P, Fiering S, Zava D, Gould TJ, Brown A, Hage P, Gaudet C, Crane-Godreau M.

Front Public Health. 2018 Oct 19;6:282. doi: 10.3389/fpubh.2018.00282. eCollection 2018.


Performance on Electronic Clinical Quality Measures in the Comprehensive Primary Care Initiative.

LaBonte CT, Payne P, Rollow W, Smith MW, Nissar A, Holtz P, Sessums LL.

Am J Med Qual. 2019 Mar/Apr;34(2):119-126. doi: 10.1177/1062860618794868. Epub 2018 Aug 22.


International Program to Monitor Cat Flea Populations for Susceptibility to Imidacloprid.

Rust MK, Blagburn BL, Denholm I, Dryden MW, Payne P, Hinkle NC, Kopp S, Williamson M.

J Med Entomol. 2018 Aug 29;55(5):1245-1253. doi: 10.1093/jme/tjy092.


Mapping the Gaps: Gender Differences in Preventive Cardiovascular Care among Managed Care Members in Four Metropolitan Areas.

Bird CE, Manocchia M, Tomblin B, Payne P, Kulakodlu M, Iacolo E, Fremont AM.

Womens Health Issues. 2018 Sep - Oct;28(5):446-455. doi: 10.1016/j.whi.2018.04.008. Epub 2018 Jun 12.


Accreditation Standard Guideline Initiative for Tai Chi and Qigong Instructors and Training Institutions.

Oh B, Yeung A, Klein P, Larkey L, Ee C, Zaslawski C, Knobf T, Payne P, Stener-Victorin E, Lee R, Choi W, Chun M, Bonucci M, Lang HD, Pavlakis N, Boyle F, Clarke S, Back M, Yang P, Wei Y, Guo X, Weng CD, Irwin MR, Elfiky AA, Rosenthal D.

Medicines (Basel). 2018 Jun 8;5(2). pii: E51. doi: 10.3390/medicines5020051.


CRISPR-based herd immunity can limit phage epidemics in bacterial populations.

Payne P, Geyrhofer L, Barton NH, Bollback JP.

Elife. 2018 Mar 9;7. pii: e32035. doi: 10.7554/eLife.32035.


Late-stage chemoselective functional-group manipulation of bioactive natural products with super-electrophilic silylium ions.

Bender TA, Payne PR, Gagné MR.

Nat Chem. 2018 Jan;10(1):85-90. doi: 10.1038/nchem.2863. Epub 2017 Sep 18.


The diversity and disparity in biomedical informatics (DDBI) workshop.

Southerland WM, Swamidass SJ, Payne PRO, Wiley L, Williams-DeVane C.

Pac Symp Biocomput. 2018;23:614-617.


Democratizing Health Data for Translational Research.

Payne PRO, Shah NH, Tenenbaum JD, Mangravite L.

Pac Symp Biocomput. 2018;23:240-246.


Diffusion mapping of drug targets on disease signaling network elements reveals drug combination strategies.

Xu J, Regan-Fendt K, Deng S, Carson WE, Payne PRO, Li F.

Pac Symp Biocomput. 2018;23:92-103.


MD-Miner: a network-based approach for personalized drug repositioning.

Wu H, Miller E, Wijegunawardana D, Regan K, Payne PRO, Li F.

BMC Syst Biol. 2017 Oct 3;11(Suppl 5):86. doi: 10.1186/s12918-017-0462-9.


Behavioral Health and the Comprehensive Primary Care (CPC) Initiative: findings from the 2014 CPC behavioral health survey.

Zivin K, Miller BF, Finke B, Bitton A, Payne P, Stowe EC, Reddy A, Day TJ, Lapin P, Jin JL, Sessums LL.

BMC Health Serv Res. 2017 Aug 29;17(1):612. doi: 10.1186/s12913-017-2562-z.


Uses and Limitations of Claims-based Performance Feedback Reports: Lessons From the Comprehensive Primary Care Initiative.

Gerteis M, Peikes D, Ghosh A, Timmins L, OʼMalley AS, Barna M, Taylor EF, Day TJ, Swankoski K, Payne PW Jr, Brown R.

J Healthc Qual. 2018 Jul/Aug;40(4):187-193. doi: 10.1097/JHQ.0000000000000099.


Integrative network and transcriptomics-based approach predicts genotype- specific drug combinations for melanoma.

Regan KE, Payne PRO, Li F.

AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:247-256. eCollection 2017.


Enabling Open Science for Health Research: Collaborative Informatics Environment for Learning on Health Outcomes (CIELO).

Payne P, Lele O, Johnson B, Holve E.

J Med Internet Res. 2017 Jul 31;19(7):e276. doi: 10.2196/jmir.6937.


Plasma MicroRNA Levels Following Resection of Metastatic Melanoma.

Latchana N, Abrams ZB, Howard JH, Regan K, Jacob N, Fadda P, Terando A, Markowitz J, Agnese D, Payne P, Carson WE 3rd.

Bioinform Biol Insights. 2017 Feb 23;11:1177932217694837. doi: 10.1177/1177932217694837. eCollection 2017.


Effectiveness of a Novel Qigong Meditative Movement Practice for Impaired Health in Flight Attendants Exposed to Second-Hand Cigarette Smoke.

Payne P, Fiering S, Leiter JC, Zava DT, Crane-Godreau MA.

Front Hum Neurosci. 2017 Feb 21;11:67. doi: 10.3389/fnhum.2017.00067. eCollection 2017.


Drug Repurposing Hypothesis Generation Using the "RE:fine Drugs" System.

Regan K, Moosavinasab S, Payne P, Lin S.

J Vis Exp. 2016 Dec 11;(118). doi: 10.3791/54948.



Payne PRO, Huang K, Shah NH, Tenenbaum J.

Pac Symp Biocomput. 2017;22:649-652. doi: 10.1142/9789813207813_0061.


MicroRNA profiling of patient plasma for clinical trials using bioinformatics and biostatistical approaches.

Markowitz J, Abrams Z, Jacob NK, Zhang X, Hassani JN, Latchana N, Wei L, Regan KE, Brooks TR, Uppati SR, Levine KM, Bekaii-Saab T, Kendra KL, Lesinski GB, Howard JH, Olencki T, Payne PR, Carson WE 3rd.

Onco Targets Ther. 2016 Sep 29;9:5931-5941. eCollection 2016.


Global microRNA profiling for diagnostic appraisal of melanocytic Spitz tumors.

Latchana N, Regan K, Howard JH, Aldrink JH, Ranalli MA, Peters SB, Zhang X, Gru A, Payne PRO, Suarez-Kelly LP, Carson WE 3rd.

J Surg Res. 2016 Oct;205(2):350-358. doi: 10.1016/j.jss.2016.06.085. Epub 2016 Jul 4.


Electronic health record-based assessment of cardiovascular health: The stroke prevention in healthcare delivery environments (SPHERE) study.

Foraker RE, Shoben AB, Kelley MM, Lai AM, Lopetegui MA, Jackson RD, Langan MA, Payne PR.

Prev Med Rep. 2016 Jul 13;4:303-8. doi: 10.1016/j.pmedr.2016.07.006. eCollection 2016 Dec.


Classification of Indeterminate Melanocytic Lesions by MicroRNA Profiling.

Latchana N, Del Campo SE, Grignol VP, Clark JR, Albert SP, Zhang J, Wei L, Aldrink JH, Nicol KK, Ranalli MA, Peters SB, Gru A, Trihka P, Payne PR, Howard JH, Carson WE 3rd.

Ann Surg Oncol. 2017 Feb;24(2):347-354. doi: 10.1245/s10434-016-5476-9. Epub 2016 Jul 28.


'RE:fine drugs': an interactive dashboard to access drug repurposing opportunities.

Moosavinasab S, Patterson J, Strouse R, Rastegar-Mojarad M, Regan K, Payne PR, Huang Y, Lin SM.

Database (Oxford). 2016 May 17;2016. pii: baw083. doi: 10.1093/database/baw083. Print 2016.


Interdisciplinary training to build an informatics workforce for precision medicine.

Williams MS, Ritchie MD, Payne PR.

Appl Transl Genom. 2015 Aug 4;6:28-30. doi: 10.1016/j.atg.2015.07.003. eCollection 2015 Sep.


Meditative Movement as a Treatment for Pulmonary Dysfunction in Flight Attendants Exposed to Second-Hand Cigarette Smoke: Study Protocol for a Randomized Trial.

Payne P, Zava D, Fiering S, Crane-Godreau M.

Front Psychiatry. 2016 Mar 22;7:38. doi: 10.3389/fpsyt.2016.00038. eCollection 2016. Review.


Rethinking the role and impact of health information technology: informatics as an interventional discipline.

Payne PR, Lussier Y, Foraker RE, Embi PJ.

BMC Med Inform Decis Mak. 2016 Mar 29;16:40. doi: 10.1186/s12911-016-0278-3. Review.


The geographic distribution of cardiovascular health in the stroke prevention in healthcare delivery environments (SPHERE) study.

Roth C, Payne PR, Weier RC, Shoben AB, Fletcher EN, Lai AM, Kelley MM, Plascak JJ, Foraker RE.

J Biomed Inform. 2016 Apr;60:95-103. doi: 10.1016/j.jbi.2016.01.013. Epub 2016 Jan 29.



Regan K, Abrams Z, Sharpnack M, Srivastava A, Huang K, Shah N, Payne PR.

Pac Symp Biocomput. 2016;21:1-8. No abstract available.


Evaluation of the Biofire FilmArray BioThreat-E Test (v2.5) for Rapid Identification of Ebola Virus Disease in Heat-Treated Blood Samples Obtained in Sierra Leone and the United Kingdom.

Weller SA, Bailey D, Matthews S, Lumley S, Sweed A, Ready D, Eltringham G, Richards J, Vipond R, Lukaszewski R, Payne PM, Aarons E, Simpson AJ, Hutley EJ, Brooks T.

J Clin Microbiol. 2016 Jan;54(1):114-9. doi: 10.1128/JCM.02287-15. Epub 2015 Nov 4.


Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12.

Campbell AR, Regan K, Bhave N, Pattanayak A, Parihar R, Stiff AR, Trikha P, Scoville SD, Liyanarachchi S, Kondadasula SV, Lele O, Davuluri R, Payne PR, Carson WE 3rd.

BMC Med Genomics. 2015 Oct 15;8:66. doi: 10.1186/s12920-015-0142-9.


ResearchIQ: Design of a Semantically Anchored Integrative Query Tool.

Lele O, Raje S, Yen PY, Payne P.

AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:97-101. eCollection 2015.


From Molecules to Patients: The Clinical Applications of Translational Bioinformatics.

Regan K, Payne PR.

Yearb Med Inform. 2015 Aug 13;10(1):164-9. doi: 10.15265/IY-2015-005.


EHR-based Visualization Tool: Adoption Rates, Satisfaction, and Patient Outcomes.

Foraker RE, Kite B, Kelley MM, Lai AM, Roth C, Lopetegui MA, Shoben AB, Langan M, Rutledge NL, Payne PR.

EGEMS (Wash DC). 2015 Jun 18;3(2):1159. doi: 10.13063/2327-9214.1159. eCollection 2015.


Real-time Data Fusion Platforms: The Need of Multi-dimensional Data-driven Research in Biomedical Informatics.

Raje S, Kite B, Ramanathan J, Payne P.

Stud Health Technol Inform. 2015;216:1107.


A Metadata based Knowledge Discovery Methodology for Seeding Translational Research.

Kothari CR, Payne PR.

Stud Health Technol Inform. 2015;216:1071.


Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts.

Abrams ZB, Peabody AL, Heerema NA, Payne PR.

Stud Health Technol Inform. 2015;216:1037.


Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma.

Regan K, Raje S, Saravanamuthu C, Payne PR.

Stud Health Technol Inform. 2015;216:663-7.


Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease.

Motiwala T, Kite B, Regan K, Gascon GM, Payne PR.

Stud Health Technol Inform. 2015;216:414-8.


Corrigendum: Somatic Experiencing: using interoception and proprioception as core elements of trauma therapy.

Payne P, Levine PA, Crane-Godreau MA.

Front Psychol. 2015 Apr 14;6:423. doi: 10.3389/fpsyg.2015.00423. eCollection 2015.


The preparatory set: a novel approach to understanding stress, trauma, and the bodymind therapies.

Payne P, Crane-Godreau MA.

Front Hum Neurosci. 2015 Apr 1;9:178. doi: 10.3389/fnhum.2015.00178. eCollection 2015.

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