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Items: 39

1.

Analytical performance of four molecular platforms used for HIV-1, HBV and HCV viral load determinations.

Aretzweiler G, Leuchter S, García-Álvarez M, Simon C, Marins E, Paxinos E, Canchola J, Delgado R, Frontzek A.

Expert Rev Mol Diagn. 2019 Jun 19:1-9. doi: 10.1080/14737159.2019.1624162. [Epub ahead of print]

PMID:
31159598
2.

Multicenter evaluation of the cobas® HIV-1 quantitative nucleic acid test for use on the cobas® 4800 system for the quantification of HIV-1 plasma viral load.

Adams P, Vancutsem E, Nicolaizeau C, Servais JY, Piérard D, François JH, Schneider T, Paxinos EE, Marins EG, Canchola JA, Seguin-Devaux C.

J Clin Virol. 2019 May;114:43-49. doi: 10.1016/j.jcv.2019.03.008. Epub 2019 Mar 16.

PMID:
30991164
3.

Diagnosis and monitoring of HCV infection using the cobas® HCV test for use on the cobas® 6800/8800 systems.

Yao JD, Young S, Heilek GM, Marino E, Paxinos EE, Marins EG, Valsamakis A.

J Clin Virol. 2018 May;102:63-69. doi: 10.1016/j.jcv.2018.02.017. Epub 2018 Feb 24.

4.

The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome.

Whitfield ZJ, Dolan PT, Kunitomi M, Tassetto M, Seetin MG, Oh S, Heiner C, Paxinos E, Andino R.

Curr Biol. 2017 Nov 20;27(22):3511-3519.e7. doi: 10.1016/j.cub.2017.09.067. Epub 2017 Nov 9.

5.

Commutability and concordance of four hepatitis B virus DNA assays in an international multicenter study.

Maasoumy B, Bremer B, Lehmann P, Marins EG, Michel-Treil V, Simon CO, Njoya M, Cornberg M, Paxinos E, Manns MP, Vermehren J, Sarrazin C, Sohn JY, Cho Y, Wedemeyer H.

Therap Adv Gastroenterol. 2017 Aug;10(8):609-618. doi: 10.1177/1756283X17722745. Epub 2017 Aug 7.

6.

Whole-Genome Sequences of Burkholderia pseudomallei Isolates Exhibiting Decreased Meropenem Susceptibility.

Price EP, Smith ML, Paxinos EE, Tallon LJ, Sadzewicz L, Sengamalay N, Baird RW, Currie BJ, Sarovich DS.

Genome Announc. 2017 Apr 6;5(14). pii: e00053-17. doi: 10.1128/genomeA.00053-17.

7.

Multicenter Comparison Study of both Analytical and Clinical Performance across Four Roche Hepatitis C Virus RNA Assays Utilizing Different Platforms.

Vermehren J, Stelzl E, Maasoumy B, Michel-Treil V, Berkowski C, Marins EG, Paxinos EE, Marino E, Wedemeyer H, Sarrazin C, Kessler HH.

J Clin Microbiol. 2017 Apr;55(4):1131-1139. doi: 10.1128/JCM.02193-16. Epub 2017 Jan 25.

8.

Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes.

Chen P, den Bakker HC, Korlach J, Kong N, Storey DB, Paxinos EE, Ashby M, Clark T, Luong K, Wiedmann M, Weimer BC.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02091-16. doi: 10.1128/AEM.02091-16. Print 2017 Feb 1.

9.

Defective HIV-1 proviruses produce novel protein-coding RNA species in HIV-infected patients on combination antiretroviral therapy.

Imamichi H, Dewar RL, Adelsberger JW, Rehm CA, O'Doherty U, Paxinos EE, Fauci AS, Lane HC.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8783-8. doi: 10.1073/pnas.1609057113. Epub 2016 Jul 18.

10.

Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples.

Laird Smith M, Murrell B, Eren K, Ignacio C, Landais E, Weaver S, Phung P, Ludka C, Hepler L, Caballero G, Pollner T, Guo Y, Richman D; IAVI Protocol C Investigators & The IAVI African HIV Research Network, Poignard P, Paxinos EE, Kosakovsky Pond SL, Smith DM.

Virus Evol. 2016 Jul 8;2(2):vew018. doi: 10.1093/ve/vew018. eCollection 2016 Jul.

11.

Assembly and diploid architecture of an individual human genome via single-molecule technologies.

Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, Stütz AM, Stedman W, Anantharaman T, Hastie A, Dai H, Fritz MH, Cao H, Cohain A, Deikus G, Durrett RE, Blanchard SC, Altman R, Chin CS, Guo Y, Paxinos EE, Korbel JO, Darnell RB, McCombie WR, Kwok PY, Mason CE, Schadt EE, Bashir A.

Nat Methods. 2015 Aug;12(8):780-6. doi: 10.1038/nmeth.3454. Epub 2015 Jun 29.

12.

Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing.

Dilernia DA, Chien JT, Monaco DC, Brown MP, Ende Z, Deymier MJ, Yue L, Paxinos EE, Allen S, Tirado-Ramos A, Hunter E.

Nucleic Acids Res. 2015 Nov 16;43(20):e129. doi: 10.1093/nar/gkv630. Epub 2015 Jun 22.

13.

Discovery of a divergent HPIV4 from respiratory secretions using second and third generation metagenomic sequencing.

Alquezar-Planas DE, Mourier T, Bruhn CA, Hansen AJ, Vitcetz SN, Mørk S, Gorodkin J, Nielsen HA, Guo Y, Sethuraman A, Paxinos EE, Shan T, Delwart EL, Nielsen LP.

Sci Rep. 2013;3:2468. doi: 10.1038/srep02468.

14.

Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti.

Katz LS, Petkau A, Beaulaurier J, Tyler S, Antonova ES, Turnsek MA, Guo Y, Wang S, Paxinos EE, Orata F, Gladney LM, Stroika S, Folster JP, Rowe L, Freeman MM, Knox N, Frace M, Boncy J, Graham M, Hammer BK, Boucher Y, Bashir A, Hanage WP, Van Domselaar G, Tarr CL.

MBio. 2013 Jul 2;4(4). pii: e00398-13. doi: 10.1128/mBio.00398-13.

15.

Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.

Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME.

PLoS One. 2012;7(11):e49602. doi: 10.1371/journal.pone.0049602. Epub 2012 Nov 14.

16.

A hybrid approach for the automated finishing of bacterial genomes.

Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE.

Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288.

17.

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.

Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK.

N Engl J Med. 2011 Aug 25;365(8):709-17. doi: 10.1056/NEJMoa1106920. Epub 2011 Jul 27.

18.

The origin of the Haitian cholera outbreak strain.

Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, Yamaichi Y, Calderwood SB, Mekalanos JJ, Schadt EE, Waldor MK.

N Engl J Med. 2011 Jan 6;364(1):33-42. doi: 10.1056/NEJMoa1012928. Epub 2010 Dec 9.

19.

Combinations of mutations in the connection domain of human immunodeficiency virus type 1 reverse transcriptase: assessing the impact on nucleoside and nonnucleoside reverse transcriptase inhibitor resistance.

Gupta S, Fransen S, Paxinos EE, Stawiski E, Huang W, Petropoulos CJ.

Antimicrob Agents Chemother. 2010 May;54(5):1973-80. doi: 10.1128/AAC.00870-09. Epub 2010 Mar 1.

20.

Coreceptor tropism in human immunodeficiency virus type 1 subtype D: high prevalence of CXCR4 tropism and heterogeneous composition of viral populations.

Huang W, Eshleman SH, Toma J, Fransen S, Stawiski E, Paxinos EE, Whitcomb JM, Young AM, Donnell D, Mmiro F, Musoke P, Guay LA, Jackson JB, Parkin NT, Petropoulos CJ.

J Virol. 2007 Aug;81(15):7885-93. Epub 2007 May 16.

21.

Development and characterization of a novel single-cycle recombinant-virus assay to determine human immunodeficiency virus type 1 coreceptor tropism.

Whitcomb JM, Huang W, Fransen S, Limoli K, Toma J, Wrin T, Chappey C, Kiss LD, Paxinos EE, Petropoulos CJ.

Antimicrob Agents Chemother. 2007 Feb;51(2):566-75. Epub 2006 Nov 20.

22.

Phenotypic drug resistance patterns in subtype A HIV-1 clones with nonnucleoside reverse transcriptase resistance mutations.

Eshleman SH, Jones D, Galovich J, Paxinos EE, Petropoulos CJ, Jackson JB, Parkin N.

AIDS Res Hum Retroviruses. 2006 Mar;22(3):289-93.

PMID:
16545016
23.

Genotypic and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive Nigerian patients.

Agwale SM, Zeh C, Paxinos E, Odama L, Pienazek D, Wambebe C, Kalish ML, Ziermann R.

AIDS Res Hum Retroviruses. 2006 Jan;22(1):22-6.

PMID:
16438641
24.

Neutralizing antibody responses drive the evolution of human immunodeficiency virus type 1 envelope during recent HIV infection.

Frost SD, Wrin T, Smith DM, Kosakovsky Pond SL, Liu Y, Paxinos E, Chappey C, Galovich J, Beauchaine J, Petropoulos CJ, Little SJ, Richman DD.

Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18514-9. Epub 2005 Dec 9.

25.

Cerebrospinal fluid HIV infection and pleocytosis: relation to systemic infection and antiretroviral treatment.

Spudich SS, Nilsson AC, Lollo ND, Liegler TJ, Petropoulos CJ, Deeks SG, Paxinos EE, Price RW.

BMC Infect Dis. 2005 Nov 2;5:98.

26.

Impact of frequent natural polymorphisms at the protease gene on the in vitro susceptibility to protease inhibitors in HIV-1 non-B subtypes.

Holguín A, Paxinos E, Hertogs K, Womac C, Soriano V.

J Clin Virol. 2004 Nov;31(3):215-20.

PMID:
15465415
27.

Long-term survivors in Nairobi: complete HIV-1 RNA sequences and immunogenetic associations.

Fang G, Kuiken C, Weiser B, Rowland-Jones S, Plummer F, Chen CH, Kaul R, Anzala AO, Bwayo J, Kimani J, Philpott SM, Kitchen C, Sinsheimer JS, Gaschen B, Lang D, Shi B, Kemal KS, Rostron T, Brunner C, Beddows S, Sattenau Q, Paxinos E, Oyugi J, Burger H.

J Infect Dis. 2004 Aug 15;190(4):697-701. Epub 2004 Jul 13.

PMID:
15272396
28.

Differences in disease progression in a cohort of long-term non-progressors after more than 16 years of HIV-1 infection.

Rodés B, Toro C, Paxinos E, Poveda E, Martinez-Padial M, Benito JM, Jimenez V, Wrin T, Bassani S, Soriano V.

AIDS. 2004 May 21;18(8):1109-16.

PMID:
15166526
29.

High prevalence of antiretroviral resistance in treated Ugandans infected with non-subtype B human immunodeficiency virus type 1.

Richard N, Juntilla M, Abraha A, Demers K, Paxinos E, Galovich J, Petropoulos C, Whalen CC, Kyeyune F, Atwine D, Kityo C, Mugyenyi P, Arts EJ.

AIDS Res Hum Retroviruses. 2004 Apr;20(4):355-64.

PMID:
15157354
30.

Mutation D30N is not preferentially selected by human immunodeficiency virus type 1 subtype C in the development of resistance to nelfinavir.

Grossman Z, Paxinos EE, Averbuch D, Maayan S, Parkin NT, Engelhard D, Lorber M, Istomin V, Shaked Y, Mendelson E, Ram D, Petropoulos CJ, Schapiro JM.

Antimicrob Agents Chemother. 2004 Jun;48(6):2159-65.

31.
32.
33.

Persistence of drug-resistant HIV-1 after a structured treatment interruption and its impact on treatment response.

Deeks SG, Grant RM, Wrin T, Paxinos EE, Liegler T, Hoh R, Martin JN, Petropoulos CJ.

AIDS. 2003 Feb 14;17(3):361-70.

PMID:
12556690
34.

Hypersusceptibility to non-nucleoside reverse transcriptase inhibitors in HIV-1: clinical, phenotypic and genotypic correlates.

Whitcomb JM, Huang W, Limoli K, Paxinos E, Wrin T, Skowron G, Deeks SG, Bates M, Hellmann NS, Petropoulos CJ.

AIDS. 2002 Oct 18;16(15):F41-7.

PMID:
12370521
35.

Prehistoric decline of genetic diversity in the nene.

Paxinos EE, James HF, Olson SL, Ballou JD, Leonard JA, Fleischer RC.

Science. 2002 Jun 7;296(5574):1827. No abstract available.

36.

mtDNA from fossils reveals a radiation of Hawaiian geese recently derived from the Canada goose (Brantacanadensis).

Paxinos EE, James HF, Olson SL, Sorenson MD, Jackson J, Fleischer RC.

Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1399-404. Epub 2002 Jan 29.

37.

Cerebrospinal fluid response to structured treatment interruption after virological failure.

Price RW, Paxinos EE, Grant RM, Drews B, Nilsson A, Hoh R, Hellmann NS, Petropoulos CJ, Deeks SG.

AIDS. 2001 Jul 6;15(10):1251-9.

PMID:
11426069
38.

Relationships of the extinct moa-nalos, flightless Hawaiian waterfowl, based on ancient DNA.

Sorenson MD, Cooper A, Paxinos EE, Quinn TW, James HF, Olson SL, Fleischer RC.

Proc Biol Sci. 1999 Nov 7;266(1434):2187-93.

39.

A noninvasive method for distinguishing among canid species: amplification and enzyme restriction of DNA from dung.

Paxinos E, McIntosh C, Ralls K, Fleischer R.

Mol Ecol. 1997 May;6(5):483-6.

PMID:
9161016

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