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Interplay Between Sub-Cellular Alterations of Calcium Release and T-Tubular Defects in Cardiac Diseases.

Scardigli M, Ferrantini C, Crocini C, Pavone FS, Sacconi L.

Front Physiol. 2018 Oct 25;9:1474. doi: 10.3389/fphys.2018.01474. eCollection 2018.


Axial Tubule Junctions Activate Atrial Ca2+ Release Across Species.

Brandenburg S, Pawlowitz J, Fakuade FE, Kownatzki-Danger D, Kohl T, Mitronova GY, Scardigli M, Neef J, Schmidt C, Wiedmann F, Pavone FS, Sacconi L, Kutschka I, Sossalla S, Moser T, Voigt N, Lehnart SE.

Front Physiol. 2018 Oct 8;9:1227. doi: 10.3389/fphys.2018.01227. eCollection 2018.


Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy.

Müllenbroich MC, Turrini L, Silvestri L, Alterini T, Gheisari A, Vanzi F, Sacconi L, Pavone FS.

Front Cell Neurosci. 2018 Sep 20;12:315. doi: 10.3389/fncel.2018.00315. eCollection 2018.


Whole-Brain Vasculature Reconstruction at the Single Capillary Level.

Di Giovanna AP, Tibo A, Silvestri L, Müllenbroich MC, Costantini I, Allegra Mascaro AL, Sacconi L, Frasconi P, Pavone FS.

Sci Rep. 2018 Aug 22;8(1):12573. doi: 10.1038/s41598-018-30533-3.


Quantifying the Proteolytic Cleavage of Plasma Membrane Proteins in Living Cells.

Calamai M, Pavone FS.

Curr Protoc Cell Biol. 2018 Dec;81(1):e58. doi: 10.1002/cpcb.58. Epub 2018 Aug 7.


Dissecting myosin-5B mechanosensitivity and calcium regulation at the single molecule level.

Gardini L, Heissler SM, Arbore C, Yang Y, Sellers JR, Pavone FS, Capitanio M.

Nat Commun. 2018 Jul 20;9(1):2844. doi: 10.1038/s41467-018-05251-z.


Real-time optical manipulation of cardiac conduction in intact hearts.

Scardigli M, Müllenbroich C, Margoni E, Cannazzaro S, Crocini C, Ferrantini C, Coppini R, Yan P, Loew LM, Campione M, Bocchi L, Giulietti D, Cerbai E, Poggesi C, Bub G, Pavone FS, Sacconi L.

J Physiol. 2018 Sep;596(17):3841-3858. doi: 10.1113/JP276283. Epub 2018 Aug 7.


High-Speed Optical Tweezers for the Study of Single Molecular Motors.

Gardini L, Tempestini A, Pavone FS, Capitanio M.

Methods Mol Biol. 2018;1805:151-184. doi: 10.1007/978-1-4939-8556-2_9.


Three-Dimensional Tracking of Quantum Dot-Conjugated Molecules in Living Cells.

Gardini L, Calamai M, Hatakeyama H, Kanzaki M, Capitanio M, Pavone FS.

Methods Mol Biol. 2018;1814:425-448. doi: 10.1007/978-1-4939-8591-3_26.


Improved label-free diagnostics and pathological assessment of atherosclerotic plaques through nonlinear microscopy.

Baria E, Nesi G, Santi R, Maio V, Massi D, Pratesi C, Cicchi R, Pavone FS.

J Biophotonics. 2018 Nov;11(11):e201800106. doi: 10.1002/jbio.201800106. Epub 2018 Jul 13.


PLANT: A Method for Detecting Changes of Slope in Noisy Trajectories.

Sosa-Costa A, Piechocka IK, Gardini L, Pavone FS, Capitanio M, Garcia-Parajo MF, Manzo C.

Biophys J. 2018 May 8;114(9):2044-2051. doi: 10.1016/j.bpj.2018.04.006.


Sliding of a single lac repressor protein along DNA is tuned by DNA sequence and molecular switching.

Tempestini A, Monico C, Gardini L, Vanzi F, Pavone FS, Capitanio M.

Nucleic Acids Res. 2018 Jun 1;46(10):5001-5011. doi: 10.1093/nar/gky208.


Data integration through brain atlasing: Human Brain Project tools and strategies.

Bjerke IE, Øvsthus M, Papp EA, Yates SC, Silvestri L, Fiorilli J, Pennartz CMA, Pavone FS, Puchades MA, Leergaard TB, Bjaalie JG.

Eur Psychiatry. 2018 Apr;50:70-76. doi: 10.1016/j.eurpsy.2018.02.004. Epub 2018 Mar 5.


Confocal multispot microscope for fast and deep imaging in semicleared tissues.

Adam MP, Müllenbroich MC, Di Giovanna AP, Alfieri D, Silvestri L, Sacconi L, Pavone FS.

J Biomed Opt. 2018 Feb;23(2):1-4. doi: 10.1117/1.JBO.23.2.020503.


Reply to Entcheva: The impact of T-tubules on action potential propagation in cardiac tissue.

Scardigli M, Crocini C, Ferrantini C, Gabbrielli T, Silvestri L, Coppini R, Tesi C, Rog-Zielinska EA, Kohl P, Cerbai E, Poggesi C, Pavone FS, Sacconi L.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E562-E563. doi: 10.1073/pnas.1720253115. Epub 2018 Jan 5. No abstract available.


Probing Collagen Organization: Practical Guide for Second-Harmonic Generation (SHG) Imaging.

Cicchi R, Pavone FS.

Methods Mol Biol. 2017;1627:409-425. doi: 10.1007/978-1-4939-7113-8_27.


Optical mapping of neuronal activity during seizures in zebrafish.

Turrini L, Fornetto C, Marchetto G, Müllenbroich MC, Tiso N, Vettori A, Resta F, Masi A, Mannaioni G, Pavone FS, Vanzi F.

Sci Rep. 2017 Jun 8;7(1):3025. doi: 10.1038/s41598-017-03087-z.


Quantitative assessment of passive electrical properties of the cardiac T-tubular system by FRAP microscopy.

Scardigli M, Crocini C, Ferrantini C, Gabbrielli T, Silvestri L, Coppini R, Tesi C, Rog-Zielinska EA, Kohl P, Cerbai E, Poggesi C, Pavone FS, Sacconi L.

Proc Natl Acad Sci U S A. 2017 May 30;114(22):5737-5742. doi: 10.1073/pnas.1702188114. Epub 2017 May 15.


Optogenetics gets to the heart: A guiding light beyond defibrillation.

Crocini C, Ferrantini C, Pavone FS, Sacconi L.

Prog Biophys Mol Biol. 2017 Nov;130(Pt B):132-139. doi: 10.1016/j.pbiomolbio.2017.05.002. Epub 2017 May 12. Review.


Direct imaging of APP proteolysis in living cells.

Parenti N, Del Grosso A, Antoni C, Cecchini M, Corradetti R, Pavone FS, Calamai M.

PeerJ. 2017 Apr 12;5:e3086. doi: 10.7717/peerj.3086. eCollection 2017.


Roadmap on neurophotonics.

Cho YK, Zheng G, Augustine GJ, Hochbaum D, Cohen A, Knöpfel T, Pisanello F, Pavone FS, Vellekoop IM, Booth MJ, Hu S, Zhu J, Chen Z, Hoshi Y.

J Opt. 2016 Sep;18(9). pii: 093007. doi: 10.1088/2040-8978/18/9/093007. Epub 2016 Aug 18.


Multimodal fiber-probe spectroscopy allows detecting epileptogenic focal cortical dysplasia in children.

Anand S, Cicchi R, Giordano F, Conti V, Buccoliero AM, Guerrini R, Pavone FS.

J Biophotonics. 2017 Jun;10(6-7):896-904. doi: 10.1002/jbio.201600136. Epub 2017 Jan 9.


Optogenetics design of mechanistically-based stimulation patterns for cardiac defibrillation.

Crocini C, Ferrantini C, Coppini R, Scardigli M, Yan P, Loew LM, Smith G, Cerbai E, Poggesi C, Pavone FS, Sacconi L.

Sci Rep. 2016 Oct 17;6:35628. doi: 10.1038/srep35628.


T-Tubular Electrical Defects Contribute to Blunted β-Adrenergic Response in Heart Failure.

Crocini C, Coppini R, Ferrantini C, Yan P, Loew LM, Poggesi C, Cerbai E, Pavone FS, Sacconi L.

Int J Mol Sci. 2016 Sep 3;17(9). pii: E1471. doi: 10.3390/ijms17091471.


Three-dimensional mapping of the orientation of collagen corneal lamellae in healthy and keratoconic human corneas using SHG microscopy.

Mercatelli R, Ratto F, Rossi F, Tatini F, Menabuoni L, Malandrini A, Nicoletti R, Pini R, Pavone FS, Cicchi R.

J Biophotonics. 2017 Jan;10(1):75-83. doi: 10.1002/jbio.201600122. Epub 2016 Jul 29.


Clearing of fixed tissue: a review from a microscopist's perspective.

Silvestri L, Costantini I, Sacconi L, Pavone FS.

J Biomed Opt. 2016 Aug;21(8):081205. doi: 10.1117/1.JBO.21.8.081205. Review.


Molecular insights into cell toxicity of a novel familial amyloidogenic variant of β2-microglobulin.

Leri M, Bemporad F, Oropesa-Nuñez R, Canale C, Calamai M, Nosi D, Ramazzotti M, Giorgetti S, Pavone FS, Bellotti V, Stefani M, Bucciantini M.

J Cell Mol Med. 2016 Aug;20(8):1443-56. doi: 10.1111/jcmm.12833. Epub 2016 Mar 18.


Observation of an improved healing process in superficial skin wounds after irradiation with a blue-LED haemostatic device.

Cicchi R, Rossi F, Alfieri D, Bacci S, Tatini F, De Siena G, Paroli G, Pini R, Pavone FS.

J Biophotonics. 2016 Jun;9(6):645-55. doi: 10.1002/jbio.201500191. Epub 2016 Jan 12.


Computer-based automatic identification of neurons in gigavoxel-sized 3D human brain images.

Soda P, Acciai L, Cordelli E, Costantini I, Sacconi L, Pavone FS, Conti V, Guerrini R, Frasconi P, Iannello G.

Conf Proc IEEE Eng Med Biol Soc. 2015;2015:7724-7. doi: 10.1109/EMBC.2015.7320182.


Novel insights on the relationship between T-tubular defects and contractile dysfunction in a mouse model of hypertrophic cardiomyopathy.

Crocini C, Ferrantini C, Scardigli M, Coppini R, Mazzoni L, Lazzeri E, Pioner JM, Scellini B, Guo A, Song LS, Yan P, Loew LM, Tardiff J, Tesi C, Vanzi F, Cerbai E, Pavone FS, Sacconi L, Poggesi C.

J Mol Cell Cardiol. 2016 Feb;91:42-51. doi: 10.1016/j.yjmcc.2015.12.013. Epub 2015 Dec 20.


Introduction to the optics and the brain 2015 feature issue.

Pavone FS, Hillman E, Leblond F, Shoham S.

Biomed Opt Express. 2015 Nov 20;6(12):4992-3. doi: 10.1364/BOE.6.004992. eCollection 2015 Dec 1.


Label-free near-infrared reflectance microscopy as a complimentary tool for two-photon fluorescence brain imaging.

Allegra Mascaro AL, Costantini I, Margoni E, Iannello G, Bria A, Sacconi L, Pavone FS.

Biomed Opt Express. 2015 Oct 21;6(11):4483-92. doi: 10.1364/BOE.6.004483. eCollection 2015 Nov 1.


Multi-Modal Optical Imaging of the Cerebellum in Animals.

Allegra Mascaro AL, Sacconi L, Silvestri L, Knott G, Pavone FS.

Cerebellum. 2015 Oct 17. [Epub ahead of print]


Comprehensive optical and data management infrastructure for high-throughput light-sheet microscopy of whole mouse brains.

Müllenbroich MC, Silvestri L, Onofri L, Costantini I, Hoff MV, Sacconi L, Iannello G, Pavone FS.

Neurophotonics. 2015 Oct;2(4):041404. doi: 10.1117/1.NPh.2.4.041404. Epub 2015 Jun 29.


Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis.

Silvestri L, Paciscopi M, Soda P, Biamonte F, Iannello G, Frasconi P, Pavone FS.

Front Neuroanat. 2015 May 27;9:68. doi: 10.3389/fnana.2015.00068. eCollection 2015.


A versatile clearing agent for multi-modal brain imaging.

Costantini I, Ghobril JP, Di Giovanna AP, Allegra Mascaro AL, Silvestri L, Müllenbroich MC, Onofri L, Conti V, Vanzi F, Sacconi L, Guerrini R, Markram H, Iannello G, Pavone FS.

Sci Rep. 2015 May 7;5:9808. doi: 10.1038/srep09808.


Non-linear imaging and characterization of atherosclerotic arterial tissue using combined SHG and FLIM microscopy.

Cicchi R, Baria E, Matthäus C, Lange M, Lattermann A, Brehm BR, Popp J, Pavone FS.

J Biophotonics. 2015 Apr;8(4):347-56. doi: 10.1002/jbio.201400142. Epub 2015 Mar 11.


Towards a comprehensive understanding of brain machinery by correlative microscopy.

Allegra Mascaro AL, Silvestri L, Sacconi L, Pavone FS.

J Biomed Opt. 2015 Jun;20(6):61105. doi: 10.1117/1.JBO.20.6.061105. Review. No abstract available.


Multispot multiphoton Ca²⁺ imaging in acute myocardial slices.

Borile G, de Mauro C, Urbani A, Alfieri D, Pavone FS, Mongillo M.

J Biomed Opt. 2015 May;20(5):51016. doi: 10.1117/1.JBO.20.5.051016.


GM1 and GM2 gangliosides: recent developments.

Bisel B, Pavone FS, Calamai M.

Biomol Concepts. 2014 Mar;5(1):87-93. doi: 10.1515/bmc-2013-0039.


Functional cardiac imaging by random access microscopy.

Crocini C, Coppini R, Ferrantini C, Pavone FS, Sacconi L.

Front Physiol. 2014 Oct 20;5:403. doi: 10.3389/fphys.2014.00403. eCollection 2014.


Defects in T-tubular electrical activity underlie local alterations of calcium release in heart failure.

Crocini C, Coppini R, Ferrantini C, Yan P, Loew LM, Tesi C, Cerbai E, Poggesi C, Pavone FS, Sacconi L.

Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15196-201. doi: 10.1073/pnas.1411557111. Epub 2014 Oct 6.


Clinical nonlinear laser imaging of human skin: a review.

Cicchi R, Kapsokalyvas D, Pavone FS.

Biomed Res Int. 2014;2014:903589. doi: 10.1155/2014/903589. Epub 2014 Aug 28. Review.


Combining single-molecule manipulation and imaging for the study of protein-DNA interactions.

Monico C, Belcastro G, Vanzi F, Pavone FS, Capitanio M.

J Vis Exp. 2014 Aug 27;(90). doi: 10.3791/51446.


Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images.

Frasconi P, Silvestri L, Soda P, Cortini R, Pavone FS, Iannello G.

Bioinformatics. 2014 Sep 1;30(17):i587-93. doi: 10.1093/bioinformatics/btu469.


Laser nanosurgery of cerebellar axons in vivo.

Allegra Mascaro AL, Sacconi L, Pavone FS.

J Vis Exp. 2014 Jul 28;(89):e51371. doi: 10.3791/51371.


The theory of pattern formation on directed networks.

Asllani M, Challenger JD, Pavone FS, Sacconi L, Fanelli D.

Nat Commun. 2014 Jul 31;5:4517. doi: 10.1038/ncomms5517.


In-vivo imaging of psoriatic lesions with polarization multispectral dermoscopy and multiphoton microscopy.

Kapsokalyvas D, Cicchi R, Bruscino N, Alfieri D, Prignano F, Massi D, Lotti T, Pavone FS.

Biomed Opt Express. 2014 Jun 24;5(7):2405-19. doi: 10.1364/BOE.5.002405. eCollection 2014 Jul 1.


Correcting spherical aberrations in confocal light sheet microscopy: a theoretical study.

Silvestri L, Sacconi L, Pavone FS.

Microsc Res Tech. 2014 Jul;77(7):483-91. doi: 10.1002/jemt.22330. Epub 2014 Jan 3.


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