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Items: 1 to 50 of 272

1.

Detecting Positive Selection in Populations Using Genetic Data.

Koropoulis A, Alachiotis N, Pavlidis P.

Methods Mol Biol. 2020;2090:87-123. doi: 10.1007/978-1-0716-0199-0_5.

PMID:
31975165
2.

Intraspecific diversification of the crop wild relative Brassica cretica Lam. using demographic model selection.

Kioukis A, Michalopoulou VA, Briers L, Pirintsos S, Studholme DJ, Pavlidis P, Sarris PF.

BMC Genomics. 2020 Jan 14;21(1):48. doi: 10.1186/s12864-019-6439-x.

3.

Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling.

Natsidis P, Tsakogiannis A, Pavlidis P, Tsigenopoulos CS, Manousaki T.

Commun Biol. 2019 Nov 1;2(1):400. doi: 10.1038/s42003-019-0654-5.

PMID:
31925294
4.

Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells.

Powell N, Pantazi E, Pavlidis P, Tsakmaki A, Li K, Yang F, Parker A, Pin C, Cozzetto D, Minns D, Stolarczyk E, Saveljeva S, Mohamed R, Lavender P, Afzali B, Digby-Bell J, Tjir-Li T, Kaser A, Friedman J, MacDonald TT, Bewick GA, Lord GM.

Gut. 2019 Dec 2. pii: gutjnl-2019-318483. doi: 10.1136/gutjnl-2019-318483. [Epub ahead of print] Review.

5.

Transcriptome reprogramming and myeloid skewing in haematopoietic stem and progenitor cells in systemic lupus erythematosus.

Grigoriou M, Banos A, Filia A, Pavlidis P, Giannouli S, Karali V, Nikolopoulos D, Pieta A, Bertsias G, Verginis P, Mitroulis I, Boumpas DT.

Ann Rheum Dis. 2019 Nov 28. pii: annrheumdis-2019-215782. doi: 10.1136/annrheumdis-2019-215782. [Epub ahead of print]

6.

Mega-Analysis of Gene Expression in Mouse Models of Alzheimer's Disease.

Zhuang B, Mancarci BO, Toker L, Pavlidis P.

eNeuro. 2019 Dec 4;6(6). pii: ENEURO.0226-19.2019. doi: 10.1523/ENEURO.0226-19.2019. Print 2019 Nov/Dec.

7.

Systematic phenomics analysis of autism-associated genes reveals parallel networks underlying reversible impairments in habituation.

McDiarmid TA, Belmadani M, Liang J, Meili F, Mathews EA, Mullen GP, Hendi A, Wong WR, Rand JB, Mizumoto K, Haas K, Pavlidis P, Rankin CH.

Proc Natl Acad Sci U S A. 2020 Jan 7;117(1):656-667. doi: 10.1073/pnas.1912049116. Epub 2019 Nov 21.

PMID:
31754030
8.

Does Nationality Matter for the Gunshot Brain Injury? Ten-Year Retrospective Observational Cadaveric Comparative Study for Gunshot TBI between Greece and Bulgaria.

Nikova AS, Karakasi MV, Pavlidis P, Birbilis T, Dimitrov I.

Korean J Neurotrauma. 2019 Oct 23;15(2):95-102. doi: 10.13004/kjnt.2019.15.e34. eCollection 2019 Oct.

9.

VariCarta: A Comprehensive Database of Harmonized Genomic Variants Found in Autism Spectrum Disorder Sequencing Studies.

Belmadani M, Jacobson M, Holmes N, Phan M, Nguyen T, Pavlidis P, Rogic S.

Autism Res. 2019 Dec;12(12):1728-1736. doi: 10.1002/aur.2236. Epub 2019 Nov 9.

PMID:
31705629
10.

Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling.

Natsidis P, Tsakogiannis A, Pavlidis P, Tsigenopoulos CS, Manousaki T.

Commun Biol. 2019 Nov 1;2:400. doi: 10.1038/s42003-019-0654-5. eCollection 2019.

11.

Foreign Bodies in the Abdominal Area: Review of the Literature.

Nastoulis E, Karakasi MV, Alexandri M, Thomaidis V, Fiska A, Pavlidis P.

Acta Medica (Hradec Kralove). 2019;62(3):85-93. doi: 10.14712/18059694.2019.130.

12.

Greek land borders and migration fatalities - Humanitarian disaster described from the standpoint of Evros.

Pavlidis P, Karakasi MV.

Forensic Sci Int. 2019 Sep;302:109875. doi: 10.1016/j.forsciint.2019.109875. Epub 2019 Jul 27.

PMID:
31378400
13.

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes.

Bomkamp C, Tripathy SJ, Bengtsson Gonzales C, Hjerling-Leffler J, Craig AM, Pavlidis P.

PLoS Comput Biol. 2019 Jun 18;15(6):e1007113. doi: 10.1371/journal.pcbi.1007113. eCollection 2019 Jun.

14.

In fear of the most loved ones. A comprehensive review on Capgras misidentification phenomenon and case report involving attempted murder under Capgras syndrome in a relapse of a schizophrenia spectrum disorder.

Karakasi MV, Markopoulou M, Alexandri M, Douzenis A, Pavlidis P.

J Forensic Leg Med. 2019 Aug;66:8-24. doi: 10.1016/j.jflm.2019.05.019. Epub 2019 May 31. Review.

PMID:
31176280
15.

A retrospective statistical review of deaths owing to migration through the southeasternmost land borders of the European Union, Greece 2000-14.

Pavlidis P, Karakasi MV.

Disasters. 2019 Jul;43(3):459-477. doi: 10.1111/disa.12355. Epub 2019 May 20. Review.

PMID:
31106454
16.

Independent amylase gene copy number bursts correlate with dietary preferences in mammals.

Pajic P, Pavlidis P, Dean K, Neznanova L, Romano RA, Garneau D, Daugherity E, Globig A, Ruhl S, Gokcumen O.

Elife. 2019 May 14;8. pii: e44628. doi: 10.7554/eLife.44628.

17.

Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.

Callaghan DB, Rogic S, Tan PPC, Calli K, Qiao Y, Baldwin R, Jacobson M, Belmadani M, Holmes N, Yu C, Li Y, Li Y, Kurtzke FE, Kuzeljevic B, Yu AY, Hudson M, Mcaughton AJM, Xu Y, Dionne-Laporte A, Girard S, Liang P, Separovic ER, Liu X, Rouleau G, Pavlidis P, Lewis MES.

Clin Genet. 2019 Sep;96(3):199-206. doi: 10.1111/cge.13556. Epub 2019 May 30.

PMID:
31038196
18.

Anatomy and clinical significance of sacral variations: a systematic review.

Nastoulis E, Karakasi MV, Pavlidis P, Thomaidis V, Fiska A.

Folia Morphol (Warsz). 2019 Apr 5. doi: 10.5603/FM.a2019.0040. [Epub ahead of print]

19.

Predictability of human differential gene expression.

Crow M, Lim N, Ballouz S, Pavlidis P, Gillis J.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6491-6500. doi: 10.1073/pnas.1802973116. Epub 2019 Mar 7.

20.

Depressive symptoms in inflammatory bowel disease: an extraintestinal manifestation of inflammation?

Moulton CD, Pavlidis P, Norton C, Norton S, Pariante C, Hayee B, Powell N.

Clin Exp Immunol. 2019 Sep;197(3):308-318. doi: 10.1111/cei.13276. Epub 2019 Mar 11. Review.

PMID:
30762873
21.

Conium maculatum intoxication: Literature review and case report on hemlock poisoning.

Karakasi MV, Tologkos S, Papadatou V, Raikos N, Lambropoulou M, Pavlidis P.

Forensic Sci Rev. 2019 Jan;31(1):23-36.

PMID:
30594904
22.

Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice.

Ndjiondjop MN, Alachiotis N, Pavlidis P, Goungoulou A, Kpeki SB, Zhao D, Semagn K.

Theor Appl Genet. 2019 Apr;132(4):1145-1158. doi: 10.1007/s00122-018-3268-2. Epub 2018 Dec 21.

23.

Human retinoic acid-regulated CD161+ regulatory T cells support wound repair in intestinal mucosa.

Povoleri GAM, Nova-Lamperti E, Scottà C, Fanelli G, Chen YC, Becker PD, Boardman D, Costantini B, Romano M, Pavlidis P, McGregor R, Pantazi E, Chauss D, Sun HW, Shih HY, Cousins DJ, Cooper N, Powell N, Kemper C, Pirooznia M, Laurence A, Kordasti S, Kazemian M, Lombardi G, Afzali B.

Nat Immunol. 2018 Dec;19(12):1403-1414. doi: 10.1038/s41590-018-0230-z. Epub 2018 Nov 5.

24.

Assessing Transcriptome Quality in Patch-Seq Datasets.

Tripathy SJ, Toker L, Bomkamp C, Mancarci BO, Belmadani M, Pavlidis P.

Front Mol Neurosci. 2018 Oct 8;11:363. doi: 10.3389/fnmol.2018.00363. eCollection 2018.

25.

Complement receptor CD46 co-stimulates optimal human CD8+ T cell effector function via fatty acid metabolism.

Arbore G, West EE, Rahman J, Le Friec G, Niyonzima N, Pirooznia M, Tunc I, Pavlidis P, Powell N, Li Y, Liu P, Servais A, Couzi L, Fremeaux-Bacchi V, Placais L, Ferraro A, Walsh PR, Kavanagh D, Afzali B, Lavender P, Lachmann HJ, Kemper C.

Nat Commun. 2018 Oct 10;9(1):4186. doi: 10.1038/s41467-018-06706-z.

26.

RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors.

Alachiotis N, Pavlidis P.

Commun Biol. 2018 Jun 27;1:79. doi: 10.1038/s42003-018-0085-8. eCollection 2018.

27.

Transcriptomic Evidence for Alterations in Astrocytes and Parvalbumin Interneurons in Subjects With Bipolar Disorder and Schizophrenia.

Toker L, Mancarci BO, Tripathy S, Pavlidis P.

Biol Psychiatry. 2018 Dec 1;84(11):787-796. doi: 10.1016/j.biopsych.2018.07.010. Epub 2018 Jul 21.

28.

Systematic evaluation of isoform function in literature reports of alternative splicing.

Bhuiyan SA, Ly S, Phan M, Huntington B, Hogan E, Liu CC, Liu J, Pavlidis P.

BMC Genomics. 2018 Aug 28;19(1):637. doi: 10.1186/s12864-018-5013-2.

29.

Monitoring changes in the Gene Ontology and their impact on genomic data analysis.

Jacobson M, Sedeño-Cortés AE, Pavlidis P.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy103.

30.

Golimumab: early experience and medium-term outcomes from two UK tertiary IBD centres.

Samaan MA, Pavlidis P, Digby-Bell J, Johnston EL, Dhillon A, Paramsothy R, Akintimehin AO, Medcalf L, Chung-Faye G, DuBois P, Koumoutsos I, Powell N, Anderson SHC, Sanderson J, Hayee BH, Irving PM.

Frontline Gastroenterol. 2018 Jul;9(3):221-231. doi: 10.1136/flgastro-2017-100895. Epub 2017 Oct 11.

31.

Differential coexpression in human tissues and the confounding effect of mean expression levels.

Farahbod M, Pavlidis P.

Bioinformatics. 2019 Jan 1;35(1):55-61. doi: 10.1093/bioinformatics/bty538.

32.

C-terminal truncation of IFN-γ inhibits proinflammatory macrophage responses and is deficient in autoimmune disease.

Dufour A, Bellac CL, Eckhard U, Solis N, Klein T, Kappelhoff R, Fortelny N, Jobin P, Rozmus J, Mark J, Pavlidis P, Dive V, Barbour SJ, Overall CM.

Nat Commun. 2018 Jun 20;9(1):2416. doi: 10.1038/s41467-018-04717-4.

33.

Letter: vedolizumab for autoimmune liver disease associated inflammatory bowel disease.

Pavlidis P, Graham J, Gulati S, Dubois P, Heneghan M, Joshi D, Hayee B.

Aliment Pharmacol Ther. 2018 May;47(10):1422-1423. doi: 10.1111/apt.14603. No abstract available.

34.

Bilateral taste disorders in patients with Ramsay Hunt syndrome and Bell palsy.

Pavlidis P, Cámara RJA, Kekes G, Gouveris H.

Ann Neurol. 2018 Apr;83(4):807-815. doi: 10.1002/ana.25210. Epub 2018 Apr 10.

PMID:
29537615
35.

Gastrointestinal toxicity of immune checkpoint inhibitors: from mechanisms to management.

Samaan MA, Pavlidis P, Papa S, Powell N, Irving PM.

Nat Rev Gastroenterol Hepatol. 2018 Apr;15(4):222-234. doi: 10.1038/nrgastro.2018.14. Epub 2018 Mar 7. Review.

PMID:
29512649
36.

Modeling sources of interlaboratory variability in electrophysiological properties of mammalian neurons.

Tebaykin D, Tripathy SJ, Binnion N, Li B, Gerkin RC, Pavlidis P.

J Neurophysiol. 2018 Apr 1;119(4):1329-1339. doi: 10.1152/jn.00604.2017. Epub 2017 Dec 20.

37.

DNA methylation as a predictor of fetal alcohol spectrum disorder.

Lussier AA, Morin AM, MacIsaac JL, Salmon J, Weinberg J, Reynolds JN, Pavlidis P, Chudley AE, Kobor MS.

Clin Epigenetics. 2018 Jan 12;10:5. doi: 10.1186/s13148-018-0439-6. eCollection 2018.

38.

Is the Garden Gun (Flobert 9 mm) Capable of Inducing Fatal Injury?: Literature Review and Comparative Presentation of Two Cases.

Pavlidis P, Karakasi MV, Kouroupi M, Theodoropoulou E, Birbilis TA.

Am J Forensic Med Pathol. 2018 Mar;39(1):18-22. doi: 10.1097/PAF.0000000000000376. Review.

PMID:
29309279
39.

Complex suicide involving pyrethroid ingestion (mosquito coils) and fatal self-wounding by sharp force.

Karakasi M-, Pavlidis P, Vasilikos E, Anestakis D, Raikos N.

Soud Lek. Winter 2017;62(4):45-50. Review.

PMID:
29227118
40.

Cross-Laboratory Analysis of Brain Cell Type Transcriptomes with Applications to Interpretation of Bulk Tissue Data.

Mancarci BO, Toker L, Tripathy SJ, Li B, Rocco B, Sibille E, Pavlidis P.

eNeuro. 2017 Nov 30;4(6). pii: ENEURO.0212-17.2017. doi: 10.1523/ENEURO.0212-17.2017. eCollection 2017 Nov-Dec.

41.

Transcriptomic correlates of neuron electrophysiological diversity.

Tripathy SJ, Toker L, Li B, Crichlow CL, Tebaykin D, Mancarci BO, Pavlidis P.

PLoS Comput Biol. 2017 Oct 25;13(10):e1005814. doi: 10.1371/journal.pcbi.1005814. eCollection 2017 Oct.

42.

Single anterior cervical discectomy and fusion (ACDF) using self- locking stand-alone polyetheretherketone (PEEK) cage: evaluation of pain and health-related quality of life.

Kapetanakis S, Thomaidis T, Charitoudis G, Pavlidis P, Theodosiadis P, Gkasdaris G.

J Spine Surg. 2017 Sep;3(3):312-322. doi: 10.21037/jss.2017.06.21.

43.

An Unusual Case Report of Bertolotti's Syndrome: Extraforaminal Stenosis and L5 Unilateral Root Compression (Castellvi Type III an LSTV).

Kapetanakis S, Chaniotakis C, Paraskevopoulos C, Pavlidis P.

J Orthop Case Rep. 2017 May-Jun;7(3):9-12. doi: 10.13107/jocr.2250-0685.782.

44.

A p53-regulated apoptotic gene signature predicts treatment response and outcome in pediatric acute lymphoblastic leukemia.

Bainer RO, Trendowski MR, Cheng C, Pei D, Yang W, Paugh SW, Goss KH, Skol AD, Pavlidis P, Pui CH, Gilliam TC, Evans WE, Onel K.

Cancer Manag Res. 2017 Sep 13;9:397-410. doi: 10.2147/CMAR.S139864. eCollection 2017.

45.

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation.

Xu D, Pavlidis P, Taskent RO, Alachiotis N, Flanagan C, DeGiorgio M, Blekhman R, Ruhl S, Gokcumen O.

Mol Biol Evol. 2017 Oct 1;34(10):2704-2715. doi: 10.1093/molbev/msx206.

46.

VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.

Xu D, Jaber Y, Pavlidis P, Gokcumen O.

BMC Bioinformatics. 2017 Sep 26;18(1):426. doi: 10.1186/s12859-017-1844-0.

47.

Concurrent lumbosacral and sacrococcygeal fusion: a rare aetiology of low back pain and coccygodynia?

Kapetanakis S, Gkasdaris G, Pavlidis P, Givissis P.

Folia Morphol (Warsz). 2018;77(2):397-399. doi: 10.5603/FM.a2017.0081. Epub 2017 Sep 21.

48.

Vedolizumab: early experience and medium-term outcomes from two UK tertiary IBD centres.

Samaan MA, Pavlidis P, Johnston E, Warner B, Digby-Bell J, Koumoutsos I, Fong S, Goldberg R, Patel K, Gulati S, Medcalf L, Sastrillo M, Brown-Clarke C, Bidewell-Sullivan J, Forsyth K, Lee E, Stanton A, Duncan J, Chung-Faye G, Dubois P, Powell N, Anderson S, Sanderson J, Hayee B, Irving PM.

Frontline Gastroenterol. 2017 Jul;8(3):196-202. doi: 10.1136/flgastro-2016-100720. Epub 2016 Aug 10.

49.

Can we predict protein from mRNA levels?

Fortelny N, Overall CM, Pavlidis P, Freue GVC.

Nature. 2017 Jul 26;547(7664):E19-E20. doi: 10.1038/nature22293. No abstract available.

PMID:
28748932
50.

An Atlas of Human Regulatory T Helper-like Cells Reveals Features of Th2-like Tregs that Support a Tumorigenic Environment.

Halim L, Romano M, McGregor R, Correa I, Pavlidis P, Grageda N, Hoong SJ, Yuksel M, Jassem W, Hannen RF, Ong M, Mckinney O, Hayee B, Karagiannis SN, Powell N, Lechler RI, Nova-Lamperti E, Lombardi G.

Cell Rep. 2017 Jul 18;20(3):757-770. doi: 10.1016/j.celrep.2017.06.079.

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