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1.

Phenomic Selection Is a Low-Cost and High-Throughput Method Based on Indirect Predictions: Proof of Concept on Wheat and Poplar.

Rincent R, Charpentier JP, Faivre-Rampant P, Paux E, Le Gouis J, Bastien C, Segura V.

G3 (Bethesda). 2018 Oct 29. pii: g3.200760.2018. doi: 10.1534/g3.118.200760. [Epub ahead of print]

2.

Structural features of two major nucleolar organizer regions (NORs), Nor-B1 and Nor-B2, and chromosome-specific rRNA gene expression in wheat.

Handa H, Kanamori H, Tanaka T, Murata K, Kobayashi F, Robinson SJ, Koh CS, Pozniak CJ, Sharpe AG, Paux E; International Wheat Genome Sequencing Consortium, Wu J, Nasuda S.

Plant J. 2018 Sep 20. doi: 10.1111/tpj.14094. [Epub ahead of print]

PMID:
30238531
3.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
4.

The transcriptional landscape of polyploid wheat.

Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar6089. doi: 10.1126/science.aar6089.

PMID:
30115782
5.

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.

Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, Guerche C, Loaec M, Lainé M, Steinbach D, Choulet F, Rimbert H, Leroy P, Guilhot N, Salse J, Feuillet C; International Wheat Genome Sequencing Consortium, Paux E, Eversole K, Adam-Blondon AF, Quesneville H.

Genome Biol. 2018 Aug 17;19(1):111. doi: 10.1186/s13059-018-1491-4.

6.

Impact of transposable elements on genome structure and evolution in bread wheat.

Wicker T, Gundlach H, Spannagl M, Uauy C, Borrill P, Ramírez-González RH, De Oliveira R; International Wheat Genome Sequencing Consortium, Mayer KFX, Paux E, Choulet F.

Genome Biol. 2018 Aug 17;19(1):103. doi: 10.1186/s13059-018-1479-0.

7.

Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome.

Ilc T, Arista G, Tavares R, Navrot N, Duchêne E, Velt A, Choulet F, Paux E, Fischer M, Nelson DR, Hugueney P, Werck-Reichhart D, Rustenholz C.

PLoS One. 2018 Jun 28;13(6):e0199902. doi: 10.1371/journal.pone.0199902. eCollection 2018.

8.

The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping.

Jordan KW, Wang S, He F, Chao S, Lun Y, Paux E, Sourdille P, Sherman J, Akhunova A, Blake NK, Pumphrey MO, Glover K, Dubcovsky J, Talbert L, Akhunov ED.

Plant J. 2018 Sep;95(6):1039-1054. doi: 10.1111/tpj.14009. Epub 2018 Jul 19.

9.

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies.

Tulpová Z, Luo MC, Toegelová H, Visendi P, Hayashi S, Vojta P, Paux E, Kilian A, Abrouk M, Bartoš J, Hajdúch M, Batley J, Edwards D, Doležel J, Šimková H.

N Biotechnol. 2018 Mar 8. pii: S1871-6784(17)30510-1. doi: 10.1016/j.nbt.2018.03.003. [Epub ahead of print]

PMID:
29526810
10.

High throughput SNP discovery and genotyping in hexaploid wheat.

Rimbert H, Darrier B, Navarro J, Kitt J, Choulet F, Leveugle M, Duarte J, Rivière N, Eversole K; International Wheat Genome Sequencing Consortium, Le Gouis J; on behalf The BreedWheat Consortium, Davassi A, Balfourier F, Le Paslier MC, Berard A, Brunel D, Feuillet C, Poncet C, Sourdille P, Paux E.

PLoS One. 2018 Jan 2;13(1):e0186329. doi: 10.1371/journal.pone.0186329. eCollection 2018.

11.

Physical Map of the Short Arm of Bread Wheat Chromosome 3D.

Holušová K, Vrána J, Šafář J, Šimková H, Balcárková B, Frenkel Z, Darrier B, Paux E, Cattonaro F, Berges H, Letellier T, Alaux M, Doležel J, Bartoš J.

Plant Genome. 2017 Jul;10(2). doi: 10.3835/plantgenome2017.03.0021.

12.

High-Resolution Mapping of Crossover Events in the Hexaploid Wheat Genome Suggests a Universal Recombination Mechanism.

Darrier B, Rimbert H, Balfourier F, Pingault L, Josselin AA, Servin B, Navarro J, Choulet F, Paux E, Sourdille P.

Genetics. 2017 Jul;206(3):1373-1388. doi: 10.1534/genetics.116.196014. Epub 2017 May 22.

13.

Exploiting the Repetitive Fraction of the Wheat Genome for High-Throughput Single-Nucleotide Polymorphism Discovery and Genotyping.

Cubizolles N, Rey E, Choulet F, Rimbert H, Laugier C, Balfourier F, Bordes J, Poncet C, Jack P, James C, Gielen J, Argillier O, Jaubertie JP, Auzanneau J, Rohde A, Ouwerkerk PB, Korzun V, Kollers S, Guerreiro L, Hourcade D, Robert O, Devaux P, Mastrangelo AM, Feuillet C, Sourdille P, Paux E.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.09.0078.

14.

A whole-genome, radiation hybrid mapping resource of hexaploid wheat.

Tiwari VK, Heesacker A, Riera-Lizarazu O, Gunn H, Wang S, Wang Y, Gu YQ, Paux E, Koo DH, Kumar A, Luo MC, Lazo G, Zemetra R, Akhunov E, Friebe B, Poland J, Gill BS, Kianian S, Leonard JM.

Plant J. 2016 Apr;86(2):195-207. doi: 10.1111/tpj.13153.

15.

Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B.

Glover NM, Daron J, Pingault L, Vandepoele K, Paux E, Feuillet C, Choulet F.

Genome Biol. 2015 Sep 9;16:188. doi: 10.1186/s13059-015-0754-6.

16.

Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome.

Pingault L, Choulet F, Alberti A, Glover N, Wincker P, Feuillet C, Paux E.

Genome Biol. 2015 Feb 10;16:29. doi: 10.1186/s13059-015-0601-9.

17.

Organization and evolution of transposable elements along the bread wheat chromosome 3B.

Daron J, Glover N, Pingault L, Theil S, Jamilloux V, Paux E, Barbe V, Mangenot S, Alberti A, Wincker P, Quesneville H, Feuillet C, Choulet F.

Genome Biol. 2014;15(12):546.

18.

Evolutionary history of Methyltransferase 1 genes in hexaploid wheat.

Thomas M, Pingault L, Poulet A, Duarte J, Throude M, Faure S, Pichon JP, Paux E, Probst AV, Tatout C.

BMC Genomics. 2014 Oct 23;15:922. doi: 10.1186/1471-2164-15-922.

19.

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model.

Bogard M, Ravel C, Paux E, Bordes J, Balfourier F, Chapman SC, Le Gouis J, Allard V.

J Exp Bot. 2014 Nov;65(20):5849-65. doi: 10.1093/jxb/eru328. Epub 2014 Aug 22.

20.

Structural and functional partitioning of bread wheat chromosome 3B.

Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, Alaux M, Jamilloux V, Poulain J, Durand C, Bellec A, Gaspin C, Safar J, Dolezel J, Rogers J, Vandepoele K, Aury JM, Mayer K, Berges H, Quesneville H, Wincker P, Feuillet C.

Science. 2014 Jul 18;345(6194):1249721. doi: 10.1126/science.1249721.

21.

Fine mapping of LrSV2, a race-specific adult plant leaf rust resistance gene on wheat chromosome 3BS.

Diéguez MJ, Pergolesi MF, Velasquez SM, Ingala L, López M, Darino M, Paux E, Feuillet C, Sacco F.

Theor Appl Genet. 2014 May;127(5):1133-41. doi: 10.1007/s00122-014-2285-z. Epub 2014 Feb 20.

PMID:
24553966
22.

The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution.

Raats D, Frenkel Z, Krugman T, Dodek I, Sela H, Simková H, Magni F, Cattonaro F, Vautrin S, Bergès H, Wicker T, Keller B, Leroy P, Philippe R, Paux E, Doležel J, Feuillet C, Korol A, Fahima T.

Genome Biol. 2013 Dec 20;14(12):R138. doi: 10.1186/gb-2013-14-12-r138.

23.

High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval.

Shatalina M, Messmer M, Feuillet C, Mascher F, Paux E, Choulet F, Wicker T, Keller B.

Theor Appl Genet. 2014 Mar;127(3):573-86. doi: 10.1007/s00122-013-2240-4. Epub 2013 Dec 4.

PMID:
24306318
24.

A physical map of the short arm of wheat chromosome 1A.

Breen J, Wicker T, Shatalina M, Frenkel Z, Bertin I, Philippe R, Spielmeyer W, Simková H, Safář J, Cattonaro F, Scalabrin S, Magni F, Vautrin S, Bergès H; International Wheat Genome Sequencing Consortium, Paux E, Fahima T, Doležel J, Korol A, Feuillet C, Keller B.

PLoS One. 2013 Nov 21;8(11):e80272. doi: 10.1371/journal.pone.0080272. eCollection 2013.

25.

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.

Philippe R, Paux E, Bertin I, Sourdille P, Choulet F, Laugier C, Simková H, Safář J, Bellec A, Vautrin S, Frenkel Z, Cattonaro F, Magni F, Scalabrin S, Martis MM, Mayer KF, Korol A, Bergès H, Doležel J, Feuillet C.

Genome Biol. 2013 Jun 25;14(6):R64. doi: 10.1186/gb-2013-14-6-r64.

26.

Radiation hybrid QTL mapping of Tdes2 involved in the first meiotic division of wheat.

Bassi FM, Kumar A, Zhang Q, Paux E, Huttner E, Kilian A, Dizon R, Feuillet C, Xu SS, Kianian SF.

Theor Appl Genet. 2013 Aug;126(8):1977-90. doi: 10.1007/s00122-013-2111-z. Epub 2013 May 29.

PMID:
23715938
27.

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure.

Li B, Choulet F, Heng Y, Hao W, Paux E, Liu Z, Yue W, Jin W, Feuillet C, Zhang X.

Plant J. 2013 Mar;73(6):952-65. doi: 10.1111/tpj.12086. Epub 2013 Feb 20.

28.

DNA repair and crossing over favor similar chromosome regions as discovered in radiation hybrid of Triticum.

Kumar A, Bassi FM, Paux E, Al-Azzam O, de Jimenez MM, Denton AM, Gu YQ, Huttner E, Kilian A, Kumar S, Goyal A, Iqbal MJ, Tiwari VK, Dogramaci M, Balyan HS, Dhaliwal HS, Gupta PK, Randhawa GS, Feuillet C, Pawlowski WP, Kianian SF.

BMC Genomics. 2012 Jul 24;13:339. doi: 10.1186/1471-2164-13-339.

29.

Transcriptional profile analysis of E3 ligase and hormone-related genes expressed during wheat grain development.

Capron D, Mouzeyar S, Boulaflous A, Girousse C, Rustenholz C, Laugier C, Paux E, Bouzidi MF.

BMC Plant Biol. 2012 Mar 14;12:35. doi: 10.1186/1471-2229-12-35.

30.

The application of LTR retrotransposons as molecular markers in plants.

Schulman AH, Flavell AJ, Paux E, Ellis TH.

Methods Mol Biol. 2012;859:115-53. doi: 10.1007/978-1-61779-603-6_7.

PMID:
22367869
31.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

32.

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.

Rustenholz C, Choulet F, Laugier C, Safár J, Simková H, Dolezel J, Magni F, Scalabrin S, Cattonaro F, Vautrin S, Bellec A, Bergès H, Feuillet C, Paux E.

Plant Physiol. 2011 Dec;157(4):1596-608. doi: 10.1104/pp.111.183921. Epub 2011 Oct 27.

33.

Sequence-based marker development in wheat: advances and applications to breeding.

Paux E, Sourdille P, Mackay I, Feuillet C.

Biotechnol Adv. 2012 Sep-Oct;30(5):1071-88. doi: 10.1016/j.biotechadv.2011.09.015. Epub 2011 Oct 1. Review.

PMID:
21989506
34.

A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew.

Mago R, Tabe L, McIntosh RA, Pretorius Z, Kota R, Paux E, Wicker T, Breen J, Lagudah ES, Ellis JG, Spielmeyer W.

Theor Appl Genet. 2011 Aug;123(4):615-23. doi: 10.1007/s00122-011-1611-y. Epub 2011 May 15.

PMID:
21573954
35.

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution.

Quraishi UM, Abrouk M, Murat F, Pont C, Foucrier S, Desmaizieres G, Confolent C, Rivière N, Charmet G, Paux E, Murigneux A, Guerreiro L, Lafarge S, Le Gouis J, Feuillet C, Salse J.

Plant J. 2011 Mar;65(5):745-56. doi: 10.1111/j.1365-313X.2010.04461.x. Epub 2011 Jan 19.

36.

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources.

Rustenholz C, Hedley PE, Morris J, Choulet F, Feuillet C, Waugh R, Paux E.

BMC Genomics. 2010 Dec 19;11:714. doi: 10.1186/1471-2164-11-714.

37.

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot.

Saintenac C, Faure S, Remay A, Choulet F, Ravel C, Paux E, Balfourier F, Feuillet C, Sourdille P.

Chromosoma. 2011 Apr;120(2):185-98. doi: 10.1007/s00412-010-0302-9. Epub 2010 Dec 16.

PMID:
21161258
38.

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.

Frenkel Z, Paux E, Mester D, Feuillet C, Korol A.

BMC Bioinformatics. 2010 Nov 30;11:584. doi: 10.1186/1471-2105-11-584.

39.

Fat element-a new marker for chromosome and genome analysis in the Triticeae.

Badaeva ED, Zoshchuk SA, Paux E, Gay G, Zoshchuk NV, Roger D, Zelenin AV, Bernard M, Feuillet C.

Chromosome Res. 2010 Sep;18(6):697-709. doi: 10.1007/s10577-010-9151-x. Epub 2010 Aug 18.

PMID:
20717716
40.

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.

Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P, Schlub S, Le Paslier MC, Magdelenat G, Gonthier C, Couloux A, Budak H, Breen J, Pumphrey M, Liu S, Kong X, Jia J, Gut M, Brunel D, Anderson JA, Gill BS, Appels R, Keller B, Feuillet C.

Plant Cell. 2010 Jun;22(6):1686-701. doi: 10.1105/tpc.110.074187. Epub 2010 Jun 25.

41.

Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations.

Hao CY, Perretant MR, Choulet F, Wang LF, Paux E, Sourdille P, Zhang XY, Feuillet C, Balfourier F.

Theor Appl Genet. 2010 Nov;121(7):1209-25. doi: 10.1007/s00122-010-1382-x. Epub 2010 Jun 18.

PMID:
20559816
42.

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block.

Breen J, Wicker T, Kong X, Zhang J, Ma W, Paux E, Feuillet C, Appels R, Bellgard M.

BMC Plant Biol. 2010 May 27;10:98. doi: 10.1186/1471-2229-10-98.

43.

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat.

Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP, Sourdille P, Balfourier F, Le Paslier MC, Chauveau A, Cakir M, Gandon B, Feuillet C.

Plant Biotechnol J. 2010 Feb;8(2):196-210. doi: 10.1111/j.1467-7652.2009.00477.x.

44.

Evaluation of the genetic variability of homoeologous group 3 SSRs in bread wheat.

Chebotar S, Sourdille P, Paux E, Balfourier F, Feuillet C, Bernard M.

Tsitol Genet. 2009 Mar-Apr;43(2):33-46.

PMID:
19938624
45.

A new genomic resource dedicated to wood formation in Eucalyptus.

Rengel D, San Clemente H, Servant F, Ladouce N, Paux E, Wincker P, Couloux A, Sivadon P, Grima-Pettenati J.

BMC Plant Biol. 2009 Mar 27;9:36. doi: 10.1186/1471-2229-9-36.

46.

Detailed recombination studies along chromosome 3B provide new insights on crossover distribution in wheat (Triticum aestivum L.).

Saintenac C, Falque M, Martin OC, Paux E, Feuillet C, Sourdille P.

Genetics. 2009 Feb;181(2):393-403. doi: 10.1534/genetics.108.097469. Epub 2008 Dec 8.

47.

A physical map of the 1-gigabase bread wheat chromosome 3B.

Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudah E, Somers D, Kilian A, Alaux M, Vautrin S, Bergès H, Eversole K, Appels R, Safar J, Simkova H, Dolezel J, Bernard M, Feuillet C.

Science. 2008 Oct 3;322(5898):101-4. doi: 10.1126/science.1161847.

48.

A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.

Bartos J, Paux E, Kofler R, Havránková M, Kopecký D, Suchánková P, Safár J, Simková H, Town CD, Lelley T, Feuillet C, Dolezel J.

BMC Plant Biol. 2008 Sep 19;8:95. doi: 10.1186/1471-2229-8-95.

49.

Mating system and recombination affect molecular evolution in four Triticeae species.

Haudry A, Cenci A, Guilhaumon C, Paux E, Poirier S, Santoni S, David J, Glémin S.

Genet Res (Camb). 2008 Feb;90(1):97-109. doi: 10.1017/S0016672307009032.

PMID:
18289404
50.

Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis.

Paux E, Legeai F, Guilhot N, Adam-Blondon AF, Alaux M, Salse J, Sourdille P, Leroy P, Feuillet C.

Funct Integr Genomics. 2008 Feb;8(1):29-32. Epub 2007 Nov 24.

PMID:
18038165

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