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Ultra-Low-Dose 18F-Florbetaben Amyloid PET Imaging Using Deep Learning with Multi-Contrast MRI Inputs.

Chen KT, Gong E, de Carvalho Macruz FB, Xu J, Boumis A, Khalighi M, Poston KL, Sha SJ, Greicius MD, Mormino E, Pauly JM, Srinivas S, Zaharchuk G.

Radiology. 2018 Dec 11:180940. doi: 10.1148/radiol.2018180940. [Epub ahead of print]


Hyperpolarized 13C MRI: Path to Clinical Translation in Oncology.

Kurhanewicz J, Vigneron DB, Ardenkjaer-Larsen JH, Bankson JA, Brindle K, Cunningham CH, Gallagher FA, Keshari KR, Kjaer A, Laustsen C, Mankoff DA, Merritt ME, Nelson SJ, Pauly JM, Lee P, Ronen S, Tyler DJ, Rajan SS, Spielman DM, Wald L, Zhang X, Malloy CR, Rizi R.

Neoplasia. 2019 Jan;21(1):1-16. doi: 10.1016/j.neo.2018.09.006. Epub 2018 Nov 23. Review.


ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI.

Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, Pisov M, Krivov E, Belyaev M, Monteiro M, Oliveira A, Choi Y, Paik MC, Kwon Y, Lee H, Kim BJ, Won JH, Islam M, Ren H, Robben D, Suetens P, Gong E, Niu Y, Xu J, Pauly JM, Lucas C, Heinrich MP, Rivera LC, Castillo LS, Daza LA, Beers AL, Arbelaezs P, Maier O, Chang K, Brown JM, Kalpathy-Cramer J, Zaharchuk G, Wiest R, Reyes M.

Front Neurol. 2018 Sep 13;9:679. doi: 10.3389/fneur.2018.00679. eCollection 2018.


Integrating a mental health clinical pharmacy specialist into the Homeless Patient Aligned Care Teams.

Pauly JB, Moore TA, Shishko I.

Ment Health Clin. 2018 Jun 29;8(4):169-174. doi: 10.9740/mhc.2018.07.169. eCollection 2018 Jul.


Automatically Determining the Confocal Parameters From OCT B-Scans for Quantification of the Attenuation Coefficients.

Dwork N, Smith GT, Leng T, Pauly JM, Bowden AK.

IEEE Trans Med Imaging. 2019 Jan;38(1):261-268. doi: 10.1109/TMI.2018.2861570. Epub 2018 Jul 31.


Deep Generative Adversarial Neural Networks for Compressive Sensing MRI.

Mardani M, Gong E, Cheng JY, Vasanawala SS, Zaharchuk G, Xing L, Pauly JM.

IEEE Trans Med Imaging. 2019 Jan;38(1):167-179. doi: 10.1109/TMI.2018.2858752. Epub 2018 Jul 23.


Variable-Density Single-Shot Fast Spin-Echo MRI with Deep Learning Reconstruction by Using Variational Networks.

Chen F, Taviani V, Malkiel I, Cheng JY, Tamir JI, Shaikh J, Chang ST, Hardy CJ, Pauly JM, Vasanawala SS.

Radiology. 2018 Nov;289(2):366-373. doi: 10.1148/radiol.2018180445. Epub 2018 Jul 24.


Quantitative susceptibility mapping using deep neural network: QSMnet.

Yoon J, Gong E, Chatnuntawech I, Bilgic B, Lee J, Jung W, Ko J, Jung H, Setsompop K, Zaharchuk G, Kim EY, Pauly J, Lee J.

Neuroimage. 2018 Oct 1;179:199-206. doi: 10.1016/j.neuroimage.2018.06.030. Epub 2018 Jun 15.


Design, characterisation and application of alginate-based encapsulated pig liver esterase.

Pauly J, Gröger H, Patel AV.

J Biotechnol. 2018 Aug 20;280:42-48. doi: 10.1016/j.jbiotec.2018.05.017. Epub 2018 Jun 5.


Technique development of 3D dynamic CS-EPSI for hyperpolarized 13 C pyruvate MR molecular imaging of human prostate cancer.

Chen HY, Larson PEZ, Gordon JW, Bok RA, Ferrone M, van Criekinge M, Carvajal L, Cao P, Pauly JM, Kerr AB, Park I, Slater JB, Nelson SJ, Munster PN, Aggarwal R, Kurhanewicz J, Vigneron DB.

Magn Reson Med. 2018 Nov;80(5):2062-2072. doi: 10.1002/mrm.27179. Epub 2018 Mar 25.


Implementation and evaluation of an opioid overdose education and naloxone distribution (OEND) program at a Veterans Affairs Medical Center.

Pauly JB, Vartan CM, Brooks AT.

Subst Abus. 2018 Mar 22:1-17. doi: 10.1080/08897077.2018.1449174. [Epub ahead of print]


Deep learning enables reduced gadolinium dose for contrast-enhanced brain MRI.

Gong E, Pauly JM, Wintermark M, Zaharchuk G.

J Magn Reson Imaging. 2018 Aug;48(2):330-340. doi: 10.1002/jmri.25970. Epub 2018 Feb 13.


Binge Alcohol Exposure Transiently Changes the Endocannabinoid System: A Potential Target to Prevent Alcohol-Induced Neurodegeneration.

Liput DJ, Pauly JR, Stinchcomb AL, Nixon K.

Brain Sci. 2017 Nov 29;7(12). pii: E158. doi: 10.3390/brainsci7120158.


Frequency shifting reduces but does not eliminate acoustic interference between echolocating bats: A theoretical analysis.

Perkins ML, Frank HK, Pauly JM, Hadly EA.

J Acoust Soc Am. 2017 Oct;142(4):2133. doi: 10.1121/1.5006928.


Thermo-Acoustic Ultrasound for Detection of RF-Induced Device Lead Heating in MRI.

Dixit N, Stang PP, Pauly JM, Scott GC.

IEEE Trans Med Imaging. 2018 Feb;37(2):536-546. doi: 10.1109/TMI.2017.2764425. Epub 2017 Oct 18.


Body diffusion-weighted imaging using magnetization prepared single-shot fast spin echo and extended parallel imaging signal averaging.

Gibbons EK, Vasanawala SS, Pauly JM, Kerr AB.

Magn Reson Med. 2018 Jun;79(6):3032-3044. doi: 10.1002/mrm.26971. Epub 2017 Oct 17.


Rapid compressed sensing reconstruction of 3D non-Cartesian MRI.

Baron CA, Dwork N, Pauly JM, Nishimura DG.

Magn Reson Med. 2018 May;79(5):2685-2692. doi: 10.1002/mrm.26928. Epub 2017 Sep 23.


Self-Calibrating Wave-Encoded Variable-Density Single-Shot Fast Spin Echo Imaging.

Chen F, Taviani V, Tamir JI, Cheng JY, Zhang T, Song Q, Hargreaves BA, Pauly JM, Vasanawala SS.

J Magn Reson Imaging. 2018 Apr;47(4):954-966. doi: 10.1002/jmri.25853. Epub 2017 Sep 14.


Robust Self-Calibrating nCPMG Acquisition: Application to Body Diffusion-Weighted Imaging.

Gibbons EK, Le Roux P, Vasanawala SS, Pauly JM, Kerr AB.

IEEE Trans Med Imaging. 2018 Jan;37(1):200-209. doi: 10.1109/TMI.2017.2741421. Epub 2017 Aug 17.


Comprehensive Multi-Dimensional MRI for the Simultaneous Assessment of Cardiopulmonary Anatomy and Physiology.

Cheng JY, Zhang T, Alley MT, Uecker M, Lustig M, Pauly JM, Vasanawala SS.

Sci Rep. 2017 Jul 13;7(1):5330. doi: 10.1038/s41598-017-04676-8.


Slice profile effects on nCPMG SS-FSE.

Gibbons EK, Le Roux P, Pauly JM, Kerr AB.

Magn Reson Med. 2018 Jan;79(1):430-438. doi: 10.1002/mrm.26694. Epub 2017 Mar 31.


Formulation of image fusion as a constrained least squares optimization problem.

Dwork N, Lasry EM, Pauly JM, Balbás J.

J Med Imaging (Bellingham). 2017 Jan;4(1):014003. doi: 10.1117/1.JMI.4.1.014003. Epub 2017 Feb 28.


The effects of nicotine in the neonatal quinpirole rodent model of psychosis: Neural plasticity mechanisms and nicotinic receptor changes.

Peterson DJ, Gill WD, Dose JM, Hoover DB, Pauly JR, Cummins ED, Burgess KC, Brown RW.

Behav Brain Res. 2017 May 15;325(Pt A):17-24. doi: 10.1016/j.bbr.2017.02.029. Epub 2017 Feb 21.


Autocalibrating motion-corrected wave-encoding for highly accelerated free-breathing abdominal MRI.

Chen F, Zhang T, Cheng JY, Shi X, Pauly JM, Vasanawala SS.

Magn Reson Med. 2017 Nov;78(5):1757-1766. doi: 10.1002/mrm.26567. Epub 2016 Dec 9.


Developmental toxicity of nicotine: A transdisciplinary synthesis and implications for emerging tobacco products.

England LJ, Aagaard K, Bloch M, Conway K, Cosgrove K, Grana R, Gould TJ, Hatsukami D, Jensen F, Kandel D, Lanphear B, Leslie F, Pauly JR, Neiderhiser J, Rubinstein M, Slotkin TA, Spindel E, Stroud L, Wakschlag L.

Neurosci Biobehav Rev. 2017 Jan;72:176-189. doi: 10.1016/j.neubiorev.2016.11.013. Epub 2016 Nov 24. Review.


A Millimeter-Wave Digital Link for Wireless MRI.

Aggarwal K, Joshi KR, Rajavi Y, Taghivand M, Pauly JM, Poon AS, Scott G.

IEEE Trans Med Imaging. 2017 Feb;36(2):574-583. doi: 10.1109/TMI.2016.2622251. Epub 2016 Oct 27.


Body Diffusion Weighted Imaging Using Non-CPMG Fast Spin Echo.

Gibbons EK, Le Roux P, Vasanawala SS, Pauly JM, Kerr AB.

IEEE Trans Med Imaging. 2017 Feb;36(2):549-559. doi: 10.1109/TMI.2016.2622238. Epub 2016 Oct 27.


Spectrally selective three-dimensional dynamic balanced steady-state free precession for hyperpolarized C-13 metabolic imaging with spectrally selective radiofrequency pulses.

Shang H, Sukumar S, von Morze C, Bok RA, Marco-Rius I, Kerr A, Reed GD, Milshteyn E, Ohliger MA, Kurhanewicz J, Larson PEZ, Pauly JM, Vigneron DB.

Magn Reson Med. 2017 Sep;78(3):963-975. doi: 10.1002/mrm.26480. Epub 2016 Oct 21.


Depletion-Mode GaN HEMT Q-Spoil Switches for MRI Coils.

Lu JY, Grafendorfer T, Zhang T, Vasanawala S, Robb F, Pauly JM, Scott GC.

IEEE Trans Med Imaging. 2016 Dec;35(12):2558-2567. Epub 2016 Jun 28.


Resolving phase ambiguity in dual-echo dixon imaging using a projected power method.

Zhang T, Chen Y, Bao S, Alley MT, Pauly JM, Hargreaves BA, Vasanawala SS.

Magn Reson Med. 2017 May;77(5):2066-2076. doi: 10.1002/mrm.26287. Epub 2016 May 25.


Improved cortical bone specificity in UTE MR Imaging.

Johnson EM, Vyas U, Ghanouni P, Pauly KB, Pauly JM.

Magn Reson Med. 2017 Feb;77(2):684-695. doi: 10.1002/mrm.26160. Epub 2016 Mar 12.


Hybrid-Space SENSE Reconstruction for Simultaneous Multi-Slice MRI.

Zhu K, Dougherty RF, Wu H, Middione MJ, Takahashi AM, Zhang T, Pauly JM, Kerr AB.

IEEE Trans Med Imaging. 2016 Aug;35(8):1824-36. doi: 10.1109/TMI.2016.2531635. Epub 2016 Feb 18.


Targeting the Cholinergic System for Neuroprotection and/or Enhancement of Functional Recovery Following Neurotrauma.

Huber KB, Uteshev VV, Pauly JR.

Curr Pharm Des. 2016;22(14):2072-82. Review.


Pharmacology: The Pharmacodynamics of Nutrients and Nutrient Interactions in Biological Functions.

Mohajeri MH, Eckert GP, Pauly JR, Butt CM.

Biomed Res Int. 2015;2015:974572. doi: 10.1155/2015/974572. Epub 2015 Dec 22. No abstract available.


Multiband RF pulses with improved performance via convex optimization.

Shang H, Larson PEZ, Kerr A, Reed G, Sukumar S, Elkhaled A, Gordon JW, Ohliger MA, Pauly JM, Lustig M, Vigneron DB.

J Magn Reson. 2016 Jan;262:81-90. doi: 10.1016/j.jmr.2015.11.010. Epub 2015 Dec 14.


Development and testing of hyperpolarized (13)C MR calibrationless parallel imaging.

Feng Y, Gordon JW, Shin PJ, von Morze C, Lustig M, Larson PEZ, Ohliger MA, Carvajal L, Tropp J, Pauly JM, Vigneron DB.

J Magn Reson. 2016 Jan;262:1-7. doi: 10.1016/j.jmr.2015.10.018. Epub 2015 Oct 31.


Comprehensive motion-compensated highly accelerated 4D flow MRI with ferumoxytol enhancement for pediatric congenital heart disease.

Cheng JY, Hanneman K, Zhang T, Alley MT, Lai P, Tamir JI, Uecker M, Pauly JM, Lustig M, Vasanawala SS.

J Magn Reson Imaging. 2016 Jun;43(6):1355-68. doi: 10.1002/jmri.25106. Epub 2015 Dec 9.


Corticosterone enhances N-methyl-D-aspartate receptor signaling to promote isolated ventral tegmental area activity in a reconstituted mesolimbic dopamine pathway.

Berry JN, Saunders MA, Sharrett-Field LJ, Reynolds AR, Bardo MT, Pauly JR, Prendergast MA.

Brain Res Bull. 2016 Jan;120:159-65. doi: 10.1016/j.brainresbull.2015.11.018. Epub 2015 Nov 26.


A semiflexible 64-channel receive-only phased array for pediatric body MRI at 3T.

Zhang T, Grafendorfer T, Cheng JY, Ning P, Rainey B, Giancola M, Ortman S, Robb FJ, Calderon PD, Hargreaves BA, Lustig M, Scott GC, Pauly JM, Vasanawala SS.

Magn Reson Med. 2016 Sep;76(3):1015-21. doi: 10.1002/mrm.25999. Epub 2015 Sep 29.


Dietary Docosahexaenoic Acid Improves Cognitive Function, Tissue Sparing, and Magnetic Resonance Imaging Indices of Edema and White Matter Injury in the Immature Rat after Traumatic Brain Injury.

Schober ME, Requena DF, Abdullah OM, Casper TC, Beachy J, Malleske D, Pauly JR.

J Neurotrauma. 2016 Feb 15;33(4):390-402. doi: 10.1089/neu.2015.3945. Epub 2015 Aug 6.


Robust self-navigated body MRI using dense coil arrays.

Zhang T, Cheng JY, Chen Y, Nishimura DG, Pauly JM, Vasanawala SS.

Magn Reson Med. 2016 Jul;76(1):197-205. doi: 10.1002/mrm.25858. Epub 2015 Jul 29.


Automated, Depth-Resolved Estimation of the Attenuation Coefficient From Optical Coherence Tomography Data.

Smith GT, Dwork N, O'Connor D, Sikora U, Lurie KL, Pauly JM, Ellerbee AK.

IEEE Trans Med Imaging. 2015 Dec;34(12):2592-602.


T1ρ Dispersion in Articular Cartilage: Relationship to Material Properties and Macromolecular Content.

Keenan KE, Besier TF, Pauly JM, Smith RL, Delp SL, Beaupre GS, Gold GE.

Cartilage. 2015 Apr;6(2):113-22. doi: 10.1177/1947603515569529.


Clinical performance of a free-breathing spatiotemporally accelerated 3-D time-resolved contrast-enhanced pediatric abdominal MR angiography.

Zhang T, Yousaf U, Hsiao A, Cheng JY, Alley MT, Lustig M, Pauly JM, Vasanawala SS.

Pediatr Radiol. 2015 Oct;45(11):1635-43. doi: 10.1007/s00247-015-3384-y. Epub 2015 Jun 4.


Fat-suppressed alternating-SSFP for whole-brain fMRI using breath-hold and visual stimulus paradigms.

Jou T, Patterson S, Pauly JM, Bowen CV.

Magn Reson Med. 2016 May;75(5):1978-88. doi: 10.1002/mrm.25797. Epub 2015 Jun 2.


Combination Therapies for Traumatic Brain Injury: Retrospective Considerations.

Margulies S, Anderson G, Atif F, Badaut J, Clark R, Empey P, Guseva M, Hoane M, Huh J, Pauly J, Raghupathi R, Scheff S, Stein D, Tang H, Hicks M.

J Neurotrauma. 2016 Jan 1;33(1):101-12. doi: 10.1089/neu.2014.3855. Epub 2015 Aug 6.


Vedolizumab: A New Opponent in the Battle Against Crohn's Disease and Ulcerative Colitis.

Poulakos M, Machin JD, Pauly J, Grace Y.

J Pharm Pract. 2016 Oct;29(5):503-15. doi: 10.1177/0897190015579610. Epub 2015 May 6. Review.


Controlling radiofrequency-induced currents in guidewires using parallel transmit.

Etezadi-Amoli M, Stang P, Kerr A, Pauly J, Scott G.

Magn Reson Med. 2015 Dec;74(6):1790-802. doi: 10.1002/mrm.25543. Epub 2014 Dec 17.


Free-breathing pediatric MRI with nonrigid motion correction and acceleration.

Cheng JY, Zhang T, Ruangwattanapaisarn N, Alley MT, Uecker M, Pauly JM, Lustig M, Vasanawala SS.

J Magn Reson Imaging. 2015 Aug;42(2):407-20. doi: 10.1002/jmri.24785. Epub 2014 Oct 20.


Chemical shift separation with controlled aliasing for hyperpolarized (13) C metabolic imaging.

Shin PJ, Larson PE, Uecker M, Reed GD, Kerr AB, Tropp J, Ohliger MA, Nelson SJ, Pauly JM, Lustig M, Vigneron DB.

Magn Reson Med. 2015 Oct;74(4):978-89. doi: 10.1002/mrm.25473. Epub 2014 Oct 8.

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