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Items: 1 to 50 of 592

1.

The human naive B cell repertoire contains distinct subclasses for a germline-targeting HIV-1 vaccine immunogen.

Havenar-Daughton C, Sarkar A, Kulp DW, Toy L, Hu X, Deresa I, Kalyuzhniy O, Kaushik K, Upadhyay AA, Menis S, Landais E, Cao L, Diedrich JK, Kumar S, Schiffner T, Reiss SM, Seumois G, Yates JR, Paulson JC, Bosinger SE, Wilson IA, Schief WR, Crotty S.

Sci Transl Med. 2018 Jul 4;10(448). pii: eaat0381. doi: 10.1126/scitranslmed.aat0381.

PMID:
29973404
2.

A systematic review of interventions for healthcare professionals to improve screening and referral for perinatal mood and anxiety disorders.

Long MM, Cramer RJ, Jenkins J, Bennington L, Paulson JF.

Arch Womens Ment Health. 2018 Jul 2. doi: 10.1007/s00737-018-0876-4. [Epub ahead of print] Review.

PMID:
29968128
3.

Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water.

Kulkarni P, Olson ND, Paulson JN, Pop M, Maddox C, Claye E, Rosenberg Goldstein RE, Sharma M, Gibbs SG, Mongodin EF, Sapkota AR.

Sci Total Environ. 2018 Oct 15;639:1126-1137. doi: 10.1016/j.scitotenv.2018.05.178. Epub 2018 May 26.

PMID:
29929281
4.

Intimate Partner Violence and Breastfeeding Outcomes in a Sample of Low-Income Women.

Miller-Graff LE, Ahmed AH, Paulson JL.

J Hum Lact. 2018 Aug;34(3):494-502. doi: 10.1177/0890334418776217. Epub 2018 Jun 21.

PMID:
29928829
5.

Sialylated keratan sulfate proteoglycans are Siglec-8 ligands in human airways.

Gonzalez-Gil A, Porell RN, Fernandes SM, Wei Y, Yu H, Carroll DJ, McBride R, Paulson JC, Tiemeyer M, Aoki K, Bochner BS, Schnaar RL.

Glycobiology. 2018 Jun 19. doi: 10.1093/glycob/cwy057. [Epub ahead of print]

PMID:
29924315
6.

Diversity of Influenza A(H5N1) Viruses in Infected Humans, Northern Vietnam, 2004-2010.

Imai H, Dinis JM, Zhong G, Moncla LH, Lopes TJS, McBride R, Thompson AJ, Peng W, Le MTQ, Hanson A, Lauck M, Sakai-Tagawa Y, Yamada S, Eggenberger J, O'Connor DH, Suzuki Y, Hatta M, Paulson JC, Neumann G, Friedrich TC, Kawaoka Y.

Emerg Infect Dis. 2018 Jul;24(7):1128-1238. doi: 10.3201/eid2407.171441.

7.

Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design.

Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB.

Cell Rep. 2018 Jun 12;23(11):3249-3261. doi: 10.1016/j.celrep.2018.05.046.

8.

Cancer subtype identification using somatic mutation data.

Kuijjer ML, Paulson JN, Salzman P, Ding W, Quackenbush J.

Br J Cancer. 2018 May 16. doi: 10.1038/s41416-018-0109-7. [Epub ahead of print]

PMID:
29765148
9.

Functional Analysis of Hsh155/SF3b1 Interactions with the U2 snRNA/Branch Site Duplex.

Carrocci TJ, Paulson JC, Hoskins AA.

RNA. 2018 May 11. pii: rna.065664.118. doi: 10.1261/rna.065664.118. [Epub ahead of print]

PMID:
29752352
10.

Global site-specific analysis of glycoprotein N-glycan processing.

Cao L, Diedrich JK, Ma Y, Wang N, Pauthner M, Park SR, Delahunty CM, McLellan JS, Burton DR, Yates JR, Paulson JC.

Nat Protoc. 2018 Jun;13(6):1196-1212. doi: 10.1038/nprot.2018.024. Epub 2018 May 3.

PMID:
29725121
11.

Multivariate analysis of risk factors for Nuss bar infections: A single center study.

Obermeyer RJ, Cohen NS, Gaffar S, Kelly RE Jr, Kuhn MA, Frantz FW, McGuire MM, Paulson JF.

J Pediatr Surg. 2018 Jun;53(6):1226-1229. doi: 10.1016/j.jpedsurg.2018.02.090. Epub 2018 Mar 8.

PMID:
29627175
12.

Broad Autism Phenotypic Traits and the Relationship to Sexual Orientation and Sexual Behavior.

Qualls LR, Hartmann K, Paulson JF.

J Autism Dev Disord. 2018 Apr 3. doi: 10.1007/s10803-018-3556-3. [Epub ahead of print]

PMID:
29616484
13.

Nonoperative management of pectus excavatum with vacuum bell therapy: A single center study.

Obermeyer RJ, Cohen NS, Kelly RE Jr, Ann Kuhn M, Frantz FW, McGuire MM, Paulson JF.

J Pediatr Surg. 2018 Jun;53(6):1221-1225. doi: 10.1016/j.jpedsurg.2018.02.088. Epub 2018 Mar 8.

PMID:
29606411
14.

A complex epistatic network limits the mutational reversibility in the influenza hemagglutinin receptor-binding site.

Wu NC, Thompson AJ, Xie J, Lin CW, Nycholat CM, Zhu X, Lerner RA, Paulson JC, Wilson IA.

Nat Commun. 2018 Mar 28;9(1):1264. doi: 10.1038/s41467-018-03663-5.

15.

Meta-analysis of the lung microbiota in pulmonary tuberculosis.

Hong BY, Paulson JN, Stine OC, Weinstock GM, Cervantes JL.

Tuberculosis (Edinb). 2018 Mar;109:102-108. doi: 10.1016/j.tube.2018.02.006. Epub 2018 Feb 22.

PMID:
29559113
16.

Metaviz: interactive statistical and visual analysis of metagenomic data.

Wagner J, Chelaru F, Kancherla J, Paulson JN, Zhang A, Felix V, Mahurkar A, Elmqvist N, Corrada Bravo H.

Nucleic Acids Res. 2018 Apr 6;46(6):2777-2787. doi: 10.1093/nar/gky136.

17.

Multisystem Analysis of Mycobacterium tuberculosis Reveals Kinase-Dependent Remodeling of the Pathogen-Environment Interface.

Carette X, Platig J, Young DC, Helmel M, Young AT, Wang Z, Potluri LP, Moody CS, Zeng J, Prisic S, Paulson JN, Muntel J, Madduri AVR, Velarde J, Mayfield JA, Locher C, Wang T, Quackenbush J, Rhee KY, Moody DB, Steen H, Husson RN.

MBio. 2018 Mar 6;9(2). pii: e02333-17. doi: 10.1128/mBio.02333-17.

18.

Enhanced Human-Type Receptor Binding by Ferret-Transmissible H5N1 with a K193T Mutation.

Peng W, Bouwman KM, McBride R, Grant OC, Woods RJ, Verheije MH, Paulson JC, de Vries RP.

J Virol. 2018 Apr 27;92(10). pii: e02016-17. doi: 10.1128/JVI.02016-17. Print 2018 May 15.

PMID:
29491160
19.

Mechanistic Investigation and Multiplexing of Liposome-Assisted Metabolic Glycan Labeling.

Sun Y, Hong S, Xie R, Huang R, Lei R, Cheng B, Sun DE, Du Y, Nycholat CM, Paulson JC, Chen X.

J Am Chem Soc. 2018 Mar 14;140(10):3592-3602. doi: 10.1021/jacs.7b10990. Epub 2018 Mar 2.

PMID:
29446631
20.

Functional analysis after rapid degradation of condensins and 3D-EM reveals chromatin volume is uncoupled from chromosome architecture in mitosis.

Samejima K, Booth DG, Ogawa H, Paulson JR, Xie L, Watson CA, Platani M, Kanemaki MT, Earnshaw WC.

J Cell Sci. 2018 Feb 22;131(4). pii: jcs210187. doi: 10.1242/jcs.210187.

21.

A pathway for mitotic chromosome formation.

Gibcus JH, Samejima K, Goloborodko A, Samejima I, Naumova N, Nuebler J, Kanemaki MT, Xie L, Paulson JR, Earnshaw WC, Mirny LA, Dekker J.

Science. 2018 Feb 9;359(6376). pii: eaao6135. doi: 10.1126/science.aao6135. Epub 2018 Jan 18.

22.

Migration-based selections of antibodies that convert bone marrow into trafficking microglia-like cells that reduce brain amyloid β.

Han KH, Arlian BM, Macauley MS, Paulson JC, Lerner RA.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E372-E381. doi: 10.1073/pnas.1719259115. Epub 2018 Jan 2.

23.

Murine Red Blood Cells Lack Ligands for B Cell Siglecs, Allowing Strong Activation by Erythrocyte Surface Antigens.

Spiller F, Nycholat CM, Kikuchi C, Paulson JC, Macauley MS.

J Immunol. 2018 Feb 1;200(3):949-956. doi: 10.4049/jimmunol.1701257. Epub 2017 Dec 29.

PMID:
29288201
24.

Validation of an Algorithm to Predict the Likelihood of an 8/8 HLA-Matched Unrelated Donor at Search Initiation.

Davis E, Devlin S, Cooper C, Nhaissi M, Paulson J, Wells D, Scaradavou A, Giralt S, Papadopoulos E, Kernan NA, Byam C, Barker JN.

Biol Blood Marrow Transplant. 2018 May;24(5):1057-1062. doi: 10.1016/j.bbmt.2017.12.791. Epub 2017 Dec 26.

PMID:
29287807
25.

Age-dependent alterations of glucose clearance and homeostasis are temporally separated and modulated by dietary fat.

Damgaard MTF, Pærregaard SI, Søgaard I, Agerholm M, Paulson JN, Treebak JT, Sina C, Holm JB, Kristiansen K, Jensen BAH.

J Nutr Biochem. 2018 Apr;54:66-76. doi: 10.1016/j.jnutbio.2017.09.026. Epub 2017 Oct 18.

PMID:
29268121
26.

Characterization of a Feline Influenza A(H7N2) Virus.

Hatta M, Zhong G, Gao Y, Nakajima N, Fan S, Chiba S, Deering KM, Ito M, Imai M, Kiso M, Nakatsu S, Lopes TJ, Thompson AJ, McBride R, Suarez DL, Macken CA, Sugita S, Neumann G, Hasegawa H, Paulson JC, Toohey-Kurth KL, Kawaoka Y.

Emerg Infect Dis. 2018 Jan;24(1):75-86. doi: 10.3201/eid2401.171240.

27.

Selective versus routine patch metal allergy testing to select bar material for the Nuss procedure in 932 patients over 10years.

Obermeyer RJ, Gaffar S, Kelly RE Jr, Kuhn MA, Frantz FW, McGuire MM, Paulson JF, Kelly CS.

J Pediatr Surg. 2018 Feb;53(2):260-264. doi: 10.1016/j.jpedsurg.2017.11.021. Epub 2017 Nov 14.

PMID:
29223667
28.

In vivo tropism of Salmonella Typhi toxin to cells expressing a multiantennal glycan receptor.

Yang YA, Lee S, Zhao J, Thompson AJ, McBride R, Tsogtbaatar B, Paulson JC, Nussinov R, Deng L, Song J.

Nat Microbiol. 2018 Feb;3(2):155-163. doi: 10.1038/s41564-017-0076-4. Epub 2017 Dec 4.

PMID:
29203881
29.

The Wisconsin Early Childhood Obesity Prevention Initiative: An Example of Statewide Collective Impact.

Meinen A, Hilgendorf A, Korth AL, Christens BD, Breuer C, Joyner H, Polzin M, Adams A, Wolfe D, Braun A, Hoiting J, Paulson J, Cullen B, Stader K.

WMJ. 2016 Nov;115(5):269-74.

30.

Understanding Tissue-Specific Gene Regulation.

Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML.

Cell Rep. 2017 Oct 24;21(4):1077-1088. doi: 10.1016/j.celrep.2017.10.001.

31.

A structural explanation for the low effectiveness of the seasonal influenza H3N2 vaccine.

Wu NC, Zost SJ, Thompson AJ, Oyen D, Nycholat CM, McBride R, Paulson JC, Hensley SE, Wilson IA.

PLoS Pathog. 2017 Oct 23;13(10):e1006682. doi: 10.1371/journal.ppat.1006682. eCollection 2017 Oct.

32.

A Highly Pathogenic Avian H7N9 Influenza Virus Isolated from A Human Is Lethal in Some Ferrets Infected via Respiratory Droplets.

Imai M, Watanabe T, Kiso M, Nakajima N, Yamayoshi S, Iwatsuki-Horimoto K, Hatta M, Yamada S, Ito M, Sakai-Tagawa Y, Shirakura M, Takashita E, Fujisaki S, McBride R, Thompson AJ, Takahashi K, Maemura T, Mitake H, Chiba S, Zhong G, Fan S, Oishi K, Yasuhara A, Takada K, Nakao T, Fukuyama S, Yamashita M, Lopes TJS, Neumann G, Odagiri T, Watanabe S, Shu Y, Paulson JC, Hasegawa H, Kawaoka Y.

Cell Host Microbe. 2017 Nov 8;22(5):615-626.e8. doi: 10.1016/j.chom.2017.09.008. Epub 2017 Oct 19.

PMID:
29056430
33.

Smooth quantile normalization.

Hicks SC, Okrah K, Paulson JN, Quackenbush J, Irizarry RA, Bravo HC.

Biostatistics. 2018 Apr 1;19(2):185-198. doi: 10.1093/biostatistics/kxx028.

PMID:
29036413
34.

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.

Paulson JN, Chen CY, Lopes-Ramos CM, Kuijjer ML, Platig J, Sonawane AR, Fagny M, Glass K, Quackenbush J.

BMC Bioinformatics. 2017 Oct 3;18(1):437. doi: 10.1186/s12859-017-1847-x.

35.

Human CD22 Inhibits Murine B Cell Receptor Activation in a Human CD22 Transgenic Mouse Model.

Bednar KJ, Shanina E, Ballet R, Connors EP, Duan S, Juan J, Arlian BM, Kulis MD, Butcher EC, Fung-Leung WP, Rao TS, Paulson JC, Macauley MS.

J Immunol. 2017 Nov 1;199(9):3116-3128. doi: 10.4049/jimmunol.1700898. Epub 2017 Sep 29.

PMID:
28972089
36.

A vital sugar code for ricin toxicity.

Taubenschmid J, Stadlmann J, Jost M, Klokk TI, Rillahan CD, Leibbrandt A, Mechtler K, Paulson JC, Jude J, Zuber J, Sandvig K, Elling U, Marquardt T, Thiel C, Koerner C, Penninger JM.

Cell Res. 2017 Nov;27(11):1351-1364. doi: 10.1038/cr.2017.116. Epub 2017 Sep 19.

37.

Identification of sialic acid-binding function for the Middle East respiratory syndrome coronavirus spike glycoprotein.

Li W, Hulswit RJG, Widjaja I, Raj VS, McBride R, Peng W, Widagdo W, Tortorici MA, van Dieren B, Lang Y, van Lent JWM, Paulson JC, de Haan CAM, de Groot RJ, van Kuppeveld FJM, Haagmans BL, Bosch BJ.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8508-E8517. doi: 10.1073/pnas.1712592114. Epub 2017 Sep 18.

38.

GlyTouCan: an accessible glycan structure repository.

Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF.

Glycobiology. 2017 Oct 1;27(10):915-919. doi: 10.1093/glycob/cwx066.

PMID:
28922742
39.

Regulatory network changes between cell lines and their tissues of origin.

Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K.

BMC Genomics. 2017 Sep 12;18(1):723. doi: 10.1186/s12864-017-4111-x.

40.

Emotion-related impulsivity and rumination predict the perimenstrual severity and trajectory of symptoms in women with a menstrually related mood disorder.

Dawson DN, Eisenlohr-Moul TA, Paulson JL, Peters JR, Rubinow DR, Girdler SS.

J Clin Psychol. 2018 Apr;74(4):579-593. doi: 10.1002/jclp.22522. Epub 2017 Sep 12.

PMID:
28898408
41.

Exploring regulation in tissues with eQTL networks.

Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850. doi: 10.1073/pnas.1707375114. Epub 2017 Aug 29.

42.

CD22 Ligands on a Natural N-Glycan Scaffold Efficiently Deliver Toxins to B-Lymphoma Cells.

Peng W, Paulson JC.

J Am Chem Soc. 2017 Sep 13;139(36):12450-12458. doi: 10.1021/jacs.7b03208. Epub 2017 Aug 31.

PMID:
28829594
43.

Diversity of Functionally Permissive Sequences in the Receptor-Binding Site of Influenza Hemagglutinin.

Wu NC, Xie J, Zheng T, Nycholat CM, Grande G, Paulson JC, Lerner RA, Wilson IA.

Cell Host Microbe. 2017 Aug 9;22(2):247-248. doi: 10.1016/j.chom.2017.07.001. No abstract available.

44.

A single mutation in Taiwanese H6N1 influenza hemagglutinin switches binding to human-type receptors.

de Vries RP, Tzarum N, Peng W, Thompson AJ, Ambepitiya Wickramasinghe IN, de la Pena ATT, van Breemen MJ, Bouwman KM, Zhu X, McBride R, Yu W, Sanders RW, Verheije MH, Wilson IA, Paulson JC.

EMBO Mol Med. 2017 Sep;9(9):1314-1325. doi: 10.15252/emmm.201707726.

45.

Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing.

Garrine M, Mandomando I, Vubil D, Nhampossa T, Acacio S, Li S, Paulson JN, Almeida M, Domman D, Thomson NR, Alonso P, Stine OC.

PLoS Negl Trop Dis. 2017 Jun 16;11(6):e0005671. doi: 10.1371/journal.pntd.0005671. eCollection 2017 Jun.

46.

Diversity of Functionally Permissive Sequences in the Receptor-Binding Site of Influenza Hemagglutinin.

Wu NC, Xie J, Zheng T, Nycholat CM, Grande G, Paulson JC, Lerner RA, Wilson IA.

Cell Host Microbe. 2017 Jun 14;21(6):742-753.e8. doi: 10.1016/j.chom.2017.05.011. Erratum in: Cell Host Microbe. 2017 Aug 9;22(2):247-248.

47.

Three mutations switch H7N9 influenza to human-type receptor specificity.

de Vries RP, Peng W, Grant OC, Thompson AJ, Zhu X, Bouwman KM, de la Pena ATT, van Breemen MJ, Ambepitiya Wickramasinghe IN, de Haan CAM, Yu W, McBride R, Sanders RW, Woods RJ, Verheije MH, Wilson IA, Paulson JC.

PLoS Pathog. 2017 Jun 15;13(6):e1006390. doi: 10.1371/journal.ppat.1006390. eCollection 2017 Jun.

48.

Epidemiology of Cerebrospinal Fluid Cultures and Time to Detection in Term Infants.

Leazer R, Erickson N, Paulson J, Zipkin R, Stemmle M, Schroeder AR, Bendel-Stenzel M, Fine BR.

Pediatrics. 2017 May;139(5). pii: e20163268. doi: 10.1542/peds.2016-3268.

49.

A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic β-Hairpin Structure.

Lee JH, Andrabi R, Su CY, Yasmeen A, Julien JP, Kong L, Wu NC, McBride R, Sok D, Pauthner M, Cottrell CA, Nieusma T, Blattner C, Paulson JC, Klasse PJ, Wilson IA, Burton DR, Ward AB.

Immunity. 2017 Apr 18;46(4):690-702. doi: 10.1016/j.immuni.2017.03.017.

50.

Unique Structural Features of Influenza Virus H15 Hemagglutinin.

Tzarum N, McBride R, Nycholat CM, Peng W, Paulson JC, Wilson IA.

J Virol. 2017 May 26;91(12). pii: e00046-17. doi: 10.1128/JVI.00046-17. Print 2017 Jun 15.

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