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Items: 1 to 50 of 104

1.

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments.

Scott KM, Williams J, Porter CMB, Russel S, Harmer TL, Paul JH, Antonen KM, Bridges MK, Camper GJ, Campla CK, Casella LG, Chase E, Conrad JW, Cruz MC, Dunlap DS, Duran L, Fahsbender EM, Goldsmith DB, Keeley RF, Kondoff MR, Kussy BI, Lane MK, Lawler S, Leigh BA, Lewis C, Lostal LM, Marking D, Mancera PA, McClenthan EC, McIntyre EA, Mine JA, Modi S, Moore BD, Morgan WA, Nelson KM, Nguyen KN, Ogburn N, Parrino DG, Pedapudi AD, Pelham RP, Preece AM, Rampersad EA, Richardson JC, Rodgers CM, Schaffer BL, Sheridan NE, Solone MR, Staley ZR, Tabuchi M, Waide RJ, Wanjugi PW, Young S, Clum A, Daum C, Huntemann M, Ivanova N, Kyrpides N, Mikhailova N, Palaniappan K, Pillay M, Reddy TBK, Shapiro N, Stamatis D, Varghese N, Woyke T, Boden R, Freyermuth SK, Kerfeld CA.

Environ Microbiol. 2018 Aug;20(8):2686-2708. doi: 10.1111/1462-2920.14090. Epub 2018 Apr 6.

PMID:
29521452
2.

Ocean biogeochemistry modeled with emergent trait-based genomics.

Coles VJ, Stukel MR, Brooks MT, Burd A, Crump BC, Moran MA, Paul JH, Satinsky BM, Yager PL, Zielinski BL, Hood RR.

Science. 2017 Dec 1;358(6367):1149-1154. doi: 10.1126/science.aan5712.

PMID:
29191900
3.

Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates.

Biller SJ, McDaniel LD, Breitbart M, Rogers E, Paul JH, Chisholm SW.

ISME J. 2017 Feb;11(2):394-404. doi: 10.1038/ismej.2016.134. Epub 2016 Nov 8.

4.

Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.

Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, Smith CB, Yager PL, Paul JH.

PLoS One. 2016 Sep 6;11(9):e0160929. doi: 10.1371/journal.pone.0160929. eCollection 2016.

5.

Sand patties provide evidence for the presence of Deepwater Horizon oil on the beaches of the West Florida Shelf.

McDaniel LD, Basso J, Pulster E, Paul JH.

Mar Pollut Bull. 2015 Aug 15;97(1-2):67-77. doi: 10.1016/j.marpolbul.2015.06.032. Epub 2015 Jun 20.

PMID:
26104828
6.

Using dispersants after oil spills: impacts on the composition and activity of microbial communities.

Kleindienst S, Paul JH, Joye SB.

Nat Rev Microbiol. 2015 Jun;13(6):388-96. doi: 10.1038/nrmicro3452. Epub 2015 May 6. Review.

PMID:
25944491
7.

Microspatial gene expression patterns in the Amazon River Plume.

Satinsky BM, Crump BC, Smith CB, Sharma S, Zielinski BL, Doherty M, Meng J, Sun S, Medeiros PM, Paul JH, Coles VJ, Yager PL, Moran MA.

Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11085-90. doi: 10.1073/pnas.1402782111. Epub 2014 Jul 14.

8.

The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010.

Satinsky BM, Zielinski BL, Doherty M, Smith CB, Sharma S, Paul JH, Crump BC, Moran MA.

Microbiome. 2014 May 15;2:17. doi: 10.1186/2049-2618-2-17. eCollection 2014.

9.

Response to comment on "Toxicity and mutagenicity of Gulf of Mexico waters during and after the deepwater horizon oil spill".

Paul JH.

Environ Sci Technol. 2014 Mar 18;48(6):3593-4. doi: 10.1021/es405469e. Epub 2014 Mar 3. No abstract available.

PMID:
24588638
10.

Toxicity and mutagenicity of Gulf of Mexico waters during and after the deepwater horizon oil spill.

Paul JH, Hollander D, Coble P, Daly KL, Murasko S, English D, Basso J, Delaney J, McDaniel L, Kovach CW.

Environ Sci Technol. 2013 Sep 3;47(17):9651-9. doi: 10.1021/es401761h. Epub 2013 Aug 21.

PMID:
23919351
11.

Comparative metagenomics: natural populations of induced prophages demonstrate highly unique, lower diversity viral sequences.

McDaniel LD, Rosario K, Breitbart M, Paul JH.

Environ Microbiol. 2014 Feb;16(2):570-85. doi: 10.1111/1462-2920.12184. Epub 2013 Jul 23.

PMID:
23879711
12.

Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean.

McDaniel LD, Young EC, Ritchie KB, Paul JH.

PLoS One. 2012;7(8):e43506. doi: 10.1371/journal.pone.0043506. Epub 2012 Aug 15.

13.

ENERGIZE! A community-based lifestyle intervention targeting at-risk, overweight children.

Paul JH, Piehl MD, Logarde WH.

N C Med J. 2011 Sep-Oct;72(5):381. No abstract available.

PMID:
22416516
14.

Eryngium foetidum L.: a review.

Paul JH, Seaforth CE, Tikasingh T.

Fitoterapia. 2011 Apr;82(3):302-8. doi: 10.1016/j.fitote.2010.11.010. Epub 2010 Nov 6. Review.

PMID:
21062639
15.

High frequency of horizontal gene transfer in the oceans.

McDaniel LD, Young E, Delaney J, Ruhnau F, Ritchie KB, Paul JH.

Science. 2010 Oct 1;330(6000):50. doi: 10.1126/science.1192243.

16.

Functional prokaryotic RubisCO from an oceanic metagenomic library.

Witte B, John D, Wawrik B, Paul JH, Dayan D, Tabita FR.

Appl Environ Microbiol. 2010 May;76(9):2997-3003. doi: 10.1128/AEM.02661-09. Epub 2010 Mar 12.

17.

Lysogeny and sporulation in Bacillus isolates from the Gulf of Mexico.

Mobberley J, Authement RN, Segall AM, Edwards RA, Slepecky RA, Paul JH.

Appl Environ Microbiol. 2010 Feb;76(3):829-42. doi: 10.1128/AEM.01710-09. Epub 2009 Dec 11.

18.

Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples.

McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ.

Appl Environ Microbiol. 2009 Jun;75(11):3379-88. doi: 10.1128/AEM.02302-08. Epub 2009 Apr 3.

19.

Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression.

McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH.

PLoS One. 2008 Sep 23;3(9):e3263. doi: 10.1371/journal.pone.0003263.

20.

Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?

Paul JH.

ISME J. 2008 Jun;2(6):579-89. doi: 10.1038/ismej.2008.35. Review.

PMID:
18521076
21.

The temperate marine phage PhiHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome.

Mobberley JM, Authement RN, Segall AM, Paul JH.

J Virol. 2008 Jul;82(13):6618-30. doi: 10.1128/JVI.00140-08. Epub 2008 Apr 30.

22.

Global-scale processes with a nanoscale drive: the role of marine viruses.

Brussaard CP, Wilhelm SW, Thingstad F, Weinbauer MG, Bratbak G, Heldal M, Kimmance SA, Middelboe M, Nagasaki K, Paul JH, Schroeder DC, Suttle CA, Vaqué D, Wommack KE.

ISME J. 2008 Jun;2(6):575-8. doi: 10.1038/ismej.2008.31. Epub 2008 Apr 3. No abstract available.

PMID:
18385772
23.
24.

Phytoplankton carbon fixation gene (RuBisCO) transcripts and air-sea CO(2) flux in the Mississippi River plume.

John DE, Wang ZA, Liu X, Byrne RH, Corredor JE, López JM, Cabrera A, Bronk DA, Tabita FR, Paul JH.

ISME J. 2007 Oct;1(6):517-31. Epub 2007 Aug 30.

PMID:
18043653
25.

Rapid screening of a large insert BAC library for specific 16S rRNA genes using TRFLP.

Babcock DA, Wawrik B, Paul JH, McGuinness L, Kerkhof LJ.

J Microbiol Methods. 2007 Nov;71(2):156-61. Epub 2007 Aug 19.

PMID:
17888534
26.

Phytoplankton-group specific quantitative polymerase chain reaction assays for RuBisCO mRNA transcripts in seawater.

John DE, Patterson SS, Paul JH.

Mar Biotechnol (NY). 2007 Nov-Dec;9(6):747-59. Epub 2007 Aug 13.

PMID:
17694413
27.

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.

Scott KM, Sievert SM, Abril FN, Ball LA, Barrett CJ, Blake RA, Boller AJ, Chain PS, Clark JA, Davis CR, Detter C, Do KF, Dobrinski KP, Faza BI, Fitzpatrick KA, Freyermuth SK, Harmer TL, Hauser LJ, Hügler M, Kerfeld CA, Klotz MG, Kong WW, Land M, Lapidus A, Larimer FW, Longo DL, Lucas S, Malfatti SA, Massey SE, Martin DD, McCuddin Z, Meyer F, Moore JL, Ocampo LH Jr, Paul JH, Paulsen IT, Reep DK, Ren Q, Ross RL, Sato PY, Thomas P, Tinkham LE, Zeruth GT.

PLoS Biol. 2006 Nov;4(12):e383.

28.

A nucleic acid sequence-based amplification assay for real-time detection of norovirus genogroup II.

Patterson SS, Smith MW, Casper ET, Huffman D, Stark L, Fries D, Paul JH.

J Appl Microbiol. 2006 Oct;101(4):956-63.

29.

A spotted fever in Tobia, Colombia. 1937.

Patino L, Afanador A, Paul JH.

Biomedica. 2006 Jun;26(2):178-93. No abstract available.

PMID:
16925091
30.
31.
32.

Comparison of PCR and plaque assay for detection and enumeration of coliphage in polluted marine waters.

Rose JB, Zhou X, Griffin DW, Paul JH.

Appl Environ Microbiol. 1997 Nov;63(11):4564-6.

33.

Marine phage genomics: what have we learned?

Paul JH, Sullivan MB.

Curr Opin Biotechnol. 2005 Jun;16(3):299-307. Review.

PMID:
15961031
34.

Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia.

Paul JH, Williamson SJ, Long A, Authement RN, John D, Segall AM, Rohwer FL, Androlewicz M, Patterson S.

Appl Environ Microbiol. 2005 Jun;71(6):3311-20.

36.

Development and evaluation of a method to detect and quantify enteroviruses using NASBA and internal control RNA (IC-NASBA).

Casper ET, Patterson SS, Smith MC, Paul JH.

J Virol Methods. 2005 Mar;124(1-2):149-55. Epub 2004 Dec 24.

PMID:
15664063
37.

Increased precision of microbial RNA quantification using NASBA with an internal control.

Patterson SS, Casper ET, Garcia-Rubio L, Smith MC, Paul JH 3rd.

J Microbiol Methods. 2005 Mar;60(3):343-52.

PMID:
15649536
38.

Geochemical rate-RNA integration study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs.

Corredor JE, Wawrik B, Paul JH, Tran H, Kerkhof L, López JM, Dieppa A, Cárdenas O.

Appl Environ Microbiol. 2004 Sep;70(9):5459-68.

39.
40.

Evaluation of marine bacterial lysogens for development of a marine prophage induction assay.

McDaniel L, Griffin DW, Crespo-Gomez J, McLaughlin MR, Paul JH.

Mar Biotechnol (NY). 2001 Nov;3(6):528-35.

PMID:
14961325
41.

Novel bis(monoterpenoid) indole alkaloids from Psychotria bahiensis.

Paul JH, Maxwell AR, Reynolds WF.

J Nat Prod. 2003 Jun;66(6):752-4.

PMID:
12828456
42.

Pathogenic human viruses in coastal waters.

Griffin DW, Donaldson KA, Paul JH, Rose JB.

Clin Microbiol Rev. 2003 Jan;16(1):129-43. Review.

43.

Marine phage genomics.

Paul JH, Sullivan MB, Segall AM, Rohwer F.

Comp Biochem Physiol B Biochem Mol Biol. 2002 Dec;133(4):463-76. Review.

PMID:
12470812
44.

Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida.

Williamson SJ, Houchin LA, McDaniel L, Paul JH.

Appl Environ Microbiol. 2002 Sep;68(9):4307-14.

45.
46.
47.

Lysogeny in marine Synechococcus.

McDaniel L, Houchin LA, Williamson SJ, Paul JH.

Nature. 2002 Jan 31;415(6871):496.

PMID:
11823851
48.

Interaction of the PhiHSIC virus with its host: lysogeny or pseudolysogeny?

Williamson SJ, McLaughlin MR, Paul JH.

Appl Environ Microbiol. 2001 Apr;67(4):1682-8.

49.

Diel Patterns of Regulation of rbcL Transcription in a Cyanobacterium and a Prymnesiophyte.

Paul JH, Kang JB, Tabita FR.

Mar Biotechnol (NY). 2000 Sep;2(5):429-436.

PMID:
11246409
50.

Microbial gene transfer: an ecological perspective.

Paul JH.

J Mol Microbiol Biotechnol. 1999 Aug;1(1):45-50. Review.

PMID:
10941783

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