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Items: 17


New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images.

Patrushev I, James-Zorn C, Ciau-Uitz A, Patient R, Gilchrist MJ.

PLoS Comput Biol. 2018 Aug 29;14(8):e1006077. doi: 10.1371/journal.pcbi.1006077. eCollection 2018 Aug.


A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo.

Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ.

Dev Biol. 2017 Jun 15;426(2):409-417. doi: 10.1016/j.ydbio.2016.07.002. Epub 2016 Jul 28.


Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development.

Owens NDL, Blitz IL, Lane MA, Patrushev I, Overton JD, Gilchrist MJ, Cho KWY, Khokha MK.

Cell Rep. 2016 Jan 26;14(3):632-647. doi: 10.1016/j.celrep.2015.12.050. Epub 2016 Jan 7.


A Database of microRNA Expression Patterns in Xenopus laevis.

Ahmed A, Ward NJ, Moxon S, Lopez-Gomollon S, Viaut C, Tomlinson ML, Patrushev I, Gilchrist MJ, Dalmay T, Dotlic D, Münsterberg AE, Wheeler GN.

PLoS One. 2015 Oct 27;10(10):e0138313. doi: 10.1371/journal.pone.0138313. eCollection 2015.


The Xenopus ORFeome: A resource that enables functional genomics.

Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ.

Dev Biol. 2015 Dec 15;408(2):345-57. doi: 10.1016/j.ydbio.2015.09.004. Epub 2015 Sep 29.


A pipeline for the systematic identification of non-redundant full-ORF cDNAs for polymorphic and evolutionary divergent genomes: Application to the ascidian Ciona intestinalis.

Gilchrist MJ, Sobral D, Khoueiry P, Daian F, Laporte B, Patrushev I, Matsumoto J, Dewar K, Hastings KE, Satou Y, Lemaire P, Rothbächer U.

Dev Biol. 2015 Aug 15;404(2):149-63. doi: 10.1016/j.ydbio.2015.05.014. Epub 2015 May 27.


Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq.

Gentsch GE, Patrushev I, Smith JC.

J Vis Exp. 2015 Feb 26;(96). doi: 10.3791/52535.


High-resolution analysis of gene activity during the Xenopus mid-blastula transition.

Collart C, Owens ND, Bhaw-Rosun L, Cooper B, De Domenico E, Patrushev I, Sesay AK, Smith JN, Smith JC, Gilchrist MJ.

Development. 2014 May;141(9):1927-39. doi: 10.1242/dev.102012.


Subcellular location of astrocytic calcium stores favors extrasynaptic neuron-astrocyte communication.

Patrushev I, Gavrilov N, Turlapov V, Semyanov A.

Cell Calcium. 2013 Nov;54(5):343-9. doi: 10.1016/j.ceca.2013.08.003. Epub 2013 Aug 28.


[The functional brain state of hibernators and nonhibernators at different animals temperatures].

Ignat'ev DA, Gordon RIa, Patrushev IV, Popov VI.

Usp Fiziol Nauk. 2012 Jan-Mar;43(1):48-74. Review. Russian.


Partial kindling induces neurogenesis, activates astrocytes and alters synaptic morphology in the dentate gyrus of freely moving adult rats.

Kraev IV, Godukhin OV, Patrushev IV, Davies HA, Popov VI, Stewart MG.

Neuroscience. 2009 Aug 18;162(2):254-67. doi: 10.1016/j.neuroscience.2009.05.020. Epub 2009 May 14.


Reversible reduction in dendritic spines in CA1 of rat and ground squirrel subjected to hypothermia-normothermia in vivo: A three-dimensional electron microscope study.

Popov VI, Medvedev NI, Patrushev IV, Ignat'ev DA, Morenkov ED, Stewart MG.

Neuroscience. 2007 Nov 9;149(3):549-60. Epub 2007 Sep 11. Erratum in: Neuroscience. 2008 Apr 9;152(4):1145.


[Alteration in activity of protein synthesis system in brain neurons of Citellus undulatus at hibernation and hypothermia].

Gordon RIa, Ignat'ev DA, Rogachevskiĭ VV, Medvedev NI, Kraev IV, Patrushev IV, Khutsian SS, Popov VI.

Zh Evol Biokhim Fiziol. 2006 May-Jun;42(3):237-43. Russian. No abstract available.


Three-dimensional reconstruction of synapses and dendritic spines in the rat and ground squirrel hippocampus: new structural-functional paradigms for synaptic function.

Popov VI, Deev AA, Klimenko OA, Kraev lV, Kuz'minykh SB, Medvedev NI, Patrushev IV, Popov RV, Rogachevskii VV, Khutsiyan SS, Stewart MG, Fesenko EE.

Neurosci Behav Physiol. 2005 May;35(4):333-41.


Remodelling of synaptic morphology but unchanged synaptic density during late phase long-term potentiation (LTP): a serial section electron micrograph study in the dentate gyrus in the anaesthetised rat.

Popov VI, Davies HA, Rogachevsky VV, Patrushev IV, Errington ML, Gabbott PL, Bliss TV, Stewart MG.

Neuroscience. 2004;128(2):251-62.


[Three-dimensional reconstruction of synapse and dendritic spines in the hippocampus of rats and ground squirrels: new paradigms of the structure and function of a synapse].

Popov VI, Deev AA, Klimenko OA, Kraev IV, Kuz'minykh S, Medvedev NI, Patrushev IV, Popov RV, Rogachevskiĭ VV, Khutsian SS, Stewart MG, Fesenko EE.

Zh Vyssh Nerv Deiat Im I P Pavlova. 2004 Jan-Feb;54(1):120-9. Russian.


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