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Items: 36

1.

Author Correction: Building a global alliance of biofoundries.

Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Feuvre RL, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS.

Nat Commun. 2019 Jul 11;10(1):3132. doi: 10.1038/s41467-019-10862-1.

2.

Building a global alliance of biofoundries.

Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Le Feuvre R, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS.

Nat Commun. 2019 May 9;10(1):2040. doi: 10.1038/s41467-019-10079-2. No abstract available. Erratum in: Nat Commun. 2019 Jul 11;10(1):3132.

3.

Cas9-mediated mutagenesis of potato starch-branching enzymes generates a range of tuber starch phenotypes.

Tuncel A, Corbin KR, Ahn-Jarvis J, Harris S, Hawkins E, Smedley MA, Harwood W, Warren FJ, Patron NJ, Smith AM.

Plant Biotechnol J. 2019 Apr 29. doi: 10.1111/pbi.13137. [Epub ahead of print]

4.

Unraveling the subtleties of β-(1→3)-glucan phosphorylase specificity in the GH94, GH149, and GH161 glycoside hydrolase families.

Kuhaudomlarp S, Pergolizzi G, Patron NJ, Henrissat B, Field RA.

J Biol Chem. 2019 Apr 19;294(16):6483-6493. doi: 10.1074/jbc.RA119.007712. Epub 2019 Feb 28.

5.

Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: An expanded toolkit for precision genome engineering.

Raitskin O, Schudoma C, West A, Patron NJ.

PLoS One. 2019 Feb 27;14(2):e0211598. doi: 10.1371/journal.pone.0211598. eCollection 2019.

6.

Loop assembly: a simple and open system for recursive fabrication of DNA circuits.

Pollak B, Cerda A, Delmans M, Álamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J.

New Phytol. 2019 Apr;222(1):628-640. doi: 10.1111/nph.15625. Epub 2019 Feb 25.

PMID:
30521109
7.

Identification of Euglena gracilis β-1,3-glucan phosphorylase and establishment of a new glycoside hydrolase (GH) family GH149.

Kuhaudomlarp S, Patron NJ, Henrissat B, Rejzek M, Saalbach G, Field RA.

J Biol Chem. 2018 Feb 23;293(8):2865-2876. doi: 10.1074/jbc.RA117.000936. Epub 2018 Jan 9.

8.

A transatlantic perspective on 20 emerging issues in biological engineering.

Wintle BC, Boehm CR, Rhodes C, Molloy JC, Millett P, Adam L, Breitling R, Carlson R, Casagrande R, Dando M, Doubleday R, Drexler E, Edwards B, Ellis T, Evans NG, Hammond R, Haseloff J, Kahl L, Kuiken T, Lichman BR, Matthewman CA, Napier JA, ÓhÉigeartaigh SS, Patron NJ, Perello E, Shapira P, Tait J, Takano E, Sutherland WJ.

Elife. 2017 Nov 14;6. pii: e30247. doi: 10.7554/eLife.30247.

9.

Harnessing plant metabolic diversity.

Owen C, Patron NJ, Huang A, Osbourn A.

Curr Opin Chem Biol. 2017 Oct;40:24-30. doi: 10.1016/j.cbpa.2017.04.015. Epub 2017 May 17. Review.

10.

Blueprints for green biotech: development and application of standards for plant synthetic biology.

Patron NJ.

Biochem Soc Trans. 2016 Jun 15;44(3):702-8. doi: 10.1042/BST20160044.

PMID:
27284031
11.

Corrigendum. Standards for plant synthetic biology: a common syntax for exchanges of DNA parts.

Patron NJ, Orzaez O, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C.

New Phytol. 2016 Jan;209(2):885. doi: 10.1111/nph.13773. Epub 2015 Nov 12. No abstract available.

12.

Multi-gene engineering in plants with RNA-guided Cas9 nuclease.

Raitskin O, Patron NJ.

Curr Opin Biotechnol. 2016 Feb;37:69-75. doi: 10.1016/j.copbio.2015.11.008. Epub 2015 Dec 18. Review.

PMID:
26707469
13.

An introduction to synthetic biology in plant systems: ERASynBio/OpenPlant summer school for early career researchers, September 2014.

Carmichael RE, Boyce A, Matthewman C, Patron NJ.

New Phytol. 2015 Oct;208(1):20-2. doi: 10.1111/nph.13433. No abstract available.

14.

Standards for plant synthetic biology: a common syntax for exchange of DNA parts.

Patron NJ, Orzaez D, Marillonnet S, Warzecha H, Matthewman C, Youles M, Raitskin O, Leveau A, Farré G, Rogers C, Smith A, Hibberd J, Webb AA, Locke J, Schornack S, Ajioka J, Baulcombe DC, Zipfel C, Kamoun S, Jones JD, Kuhn H, Robatzek S, Van Esse HP, Sanders D, Oldroyd G, Martin C, Field R, O'Connor S, Fox S, Wulff B, Miller B, Breakspear A, Radhakrishnan G, Delaux PM, Loqué D, Granell A, Tissier A, Shih P, Brutnell TP, Quick WP, Rischer H, Fraser PD, Aharoni A, Raines C, South PF, Ané JM, Hamberger BR, Langdale J, Stougaard J, Bouwmeester H, Udvardi M, Murray JA, Ntoukakis V, Schäfer P, Denby K, Edwards KJ, Osbourn A, Haseloff J.

New Phytol. 2015 Oct;208(1):13-9. doi: 10.1111/nph.13532. Epub 2015 Jul 14. Erratum in: New Phytol. 2016 Jan;209(2):885.

15.

Editing plant genomes with CRISPR/Cas9.

Belhaj K, Chaparro-Garcia A, Kamoun S, Patron NJ, Nekrasov V.

Curr Opin Biotechnol. 2015 Apr;32:76-84. doi: 10.1016/j.copbio.2014.11.007. Epub 2014 Nov 29. Review.

PMID:
25437637
16.

A golden gate modular cloning toolbox for plants.

Engler C, Youles M, Gruetzner R, Ehnert TM, Werner S, Jones JD, Patron NJ, Marillonnet S.

ACS Synth Biol. 2014 Nov 21;3(11):839-43. doi: 10.1021/sb4001504. Epub 2014 Feb 20.

PMID:
24933124
17.

DNA assembly for plant biology: techniques and tools.

Patron NJ.

Curr Opin Plant Biol. 2014 Jun;19:14-9. doi: 10.1016/j.pbi.2014.02.004. Epub 2014 Mar 12. Review.

PMID:
24632010
18.

Reduced lignin content and altered lignin composition in the warm season forage grass Paspalum dilatatum by down-regulation of a Cinnamoyl CoA reductase gene.

Giordano A, Liu Z, Panter SN, Dimech AM, Shang Y, Wijesinghe H, Fulgueras K, Ran Y, Mouradov A, Rochfort S, Patron NJ, Spangenberg GC.

Transgenic Res. 2014 Jun;23(3):503-17. doi: 10.1007/s11248-014-9784-1. Epub 2014 Feb 7.

19.

The RAB family GTPase Rab1A from Plasmodium falciparum defines a unique paralog shared by chromalveolates and rhizaria.

Elias M, Patron NJ, Keeling PJ.

J Eukaryot Microbiol. 2009 Jul-Aug;56(4):348-56. doi: 10.1111/j.1550-7408.2009.00408.x.

PMID:
19602080
20.

Sulfate assimilation in eukaryotes: fusions, relocations and lateral transfers.

Patron NJ, Durnford DG, Kopriva S.

BMC Evol Biol. 2008 Feb 4;8:39. doi: 10.1186/1471-2148-8-39.

21.

Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes.

Patron NJ, Waller RF, Cozijnsen AJ, Straney DC, Gardiner DM, Nierman WC, Howlett BJ.

BMC Evol Biol. 2007 Sep 26;7:174.

22.

Transit peptide diversity and divergence: A global analysis of plastid targeting signals.

Patron NJ, Waller RF.

Bioessays. 2007 Oct;29(10):1048-58. Review.

PMID:
17876808
23.
24.

Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages.

Patron NJ, Inagaki Y, Keeling PJ.

Curr Biol. 2007 May 15;17(10):887-91. Epub 2007 Apr 26.

25.

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.

Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E.

PLoS Biol. 2006 Sep;4(9):e286.

26.

EFL GTPase in cryptomonads and the distribution of EFL and EF-1alpha in chromalveolates.

Gile GH, Patron NJ, Keeling PJ.

Protist. 2006 Oct;157(4):435-44. Epub 2006 Aug 10.

PMID:
16904374
27.

Comparative rates of evolution in endosymbiotic nuclear genomes.

Patron NJ, Rogers MB, Keeling PJ.

BMC Evol Biol. 2006 Jun 14;6:46.

28.

Phylogenetic history of plastid-targeted proteins in the peridinin-containing dinoflagellate Heterocapsa triquetra.

Waller RF, Patron NJ, Keeling PJ.

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1439-47.

PMID:
16738125
29.

A tertiary plastid uses genes from two endosymbionts.

Patron NJ, Waller RF, Keeling PJ.

J Mol Biol. 2006 Apr 14;357(5):1373-82. Epub 2006 Feb 9.

PMID:
16490209
30.

A high frequency of overlapping gene expression in compacted eukaryotic genomes.

Williams BA, Slamovits CH, Patron NJ, Fast NM, Keeling PJ.

Proc Natl Acad Sci U S A. 2005 Aug 2;102(31):10936-41. Epub 2005 Jul 21.

31.

A transcriptional fusion of genes encoding glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and enolase in dinoflagellates.

Takishita K, Patron NJ, Ishida K, Maruyama T, Keeling PJ.

J Eukaryot Microbiol. 2005 Jul-Aug;52(4):343-8.

PMID:
16014012
32.

Complex protein targeting to dinoflagellate plastids.

Patron NJ, Waller RF, Archibald JM, Keeling PJ.

J Mol Biol. 2005 May 13;348(4):1015-24.

PMID:
15843030
34.

The lys5 mutations of barley reveal the nature and importance of plastidial ADP-Glc transporters for starch synthesis in cereal endosperm.

Patron NJ, Greber B, Fahy BF, Laurie DA, Parker ML, Denyer K.

Plant Physiol. 2004 Aug;135(4):2088-97. Epub 2004 Aug 6.

35.

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