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Items: 1 to 50 of 105

1.

Evaluating stably expressed genes in single cells.

Lin Y, Ghazanfar S, Strbenac D, Wang A, Patrick E, Lin DM, Speed T, Yang JYH, Yang P.

Gigascience. 2019 Sep 1;8(9). pii: giz106. doi: 10.1093/gigascience/giz106.

2.

Characterization of the human myelin oligodendrocyte glycoprotein antibody response in demyelination.

Tea F, Lopez JA, Ramanathan S, Merheb V, Lee FXZ, Zou A, Pilli D, Patrick E, van der Walt A, Monif M, Tantsis EM, Yiu EM, Vucic S, Henderson APD, Fok A, Fraser CL, Lechner-Scott J, Reddel SW, Broadley S, Barnett MH, Brown DA, Lunemann JD, Dale RC, Brilot F; Australasian and New Zealand MOG Study Group.

Acta Neuropathol Commun. 2019 Sep 3;7(1):145. doi: 10.1186/s40478-019-0786-3.

3.

Using Transcriptomic Hidden Variables to Infer Context-Specific Genotype Effects in the Brain.

Ng B, Casazza W, Patrick E, Tasaki S, Novakovsky G, Felsky D, Ma Y, Bennett DA, Gaiteri C, De Jager PL, Mostafavi S.

Am J Hum Genet. 2019 Sep 5;105(3):562-572. doi: 10.1016/j.ajhg.2019.07.016. Epub 2019 Aug 22.

PMID:
31447098
4.

Identification of HIV transmitting CD11c+ human epidermal dendritic cells.

Bertram KM, Botting RA, Baharlou H, Rhodes JW, Rana H, Graham JD, Patrick E, Fletcher J, Plasto TM, Truong NR, Royle C, Doyle CM, Tong O, Nasr N, Barnouti L, Kohout MP, Brooks AJ, Wines MP, Haertsch P, Lim J, Gosselink MP, Ctercteko G, Estes JD, Churchill MJ, Cameron PU, Hunter E, Haniffa MA, Cunningham AL, Harman AN.

Nat Commun. 2019 Jun 21;10(1):2759. doi: 10.1038/s41467-019-10697-w.

5.

Standardisation of flow cytometry for whole blood immunophenotyping of islet transplant and transplant clinical trial recipients.

Jimenez Vera E, Chew YV, Nicholson L, Burns H, Anderson P, Chen HT, Williams L, Keung K, Zanjani NT, Dervish S, Patrick E, Wang XM, Yi S, Hawthorne W, Alexander S, O'Connell PJ, Hu M.

PLoS One. 2019 May 22;14(5):e0217163. doi: 10.1371/journal.pone.0217163. eCollection 2019.

6.

Enhanced Rabies Surveillance Using a Direct Rapid Immunohistochemical Test.

Patrick EM, Bjorklund BM, Kirby JD, Nelson KM, Chipman RB, Rupprecht CE.

J Vis Exp. 2019 Apr 30;(146). doi: 10.3791/59416.

PMID:
31107436
7.

Design and assessment of stimulation parameters for a novel peripheral nerve interface.

Patrick EE, Currlin S, Kundu A, Delgado F, Fahmy A, Madler R, Maghari N, Bashirullah R, Gunduz A, Otto K.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:5491-5494. doi: 10.1109/EMBC.2018.8513582.

PMID:
30441580
8.

Effect of Asymmetric, Charge Balanced Stimuli on Elicited Compound Neural Action Potentials.

Delgado F, Currlin S, Kundu A, Patrick EE, Otto KJ.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:3370-3373. doi: 10.1109/EMBC.2018.8513057.

PMID:
30441110
9.

Blood CRP levels are elevated in children and adolescents with functional neurological symptom disorder.

Kozlowska K, Chung J, Cruickshank B, McLean L, Scher S, Dale RC, Mohammad SS, Singh-Grewal D, Prabhuswamy MY, Patrick E.

Eur Child Adolesc Psychiatry. 2019 Apr;28(4):491-504. doi: 10.1007/s00787-018-1212-2. Epub 2018 Aug 24.

PMID:
30143887
10.

DCARS: differential correlation across ranked samples.

Ghazanfar S, Strbenac D, Ormerod JT, Yang JYH, Patrick E.

Bioinformatics. 2019 Mar 1;35(5):823-829. doi: 10.1093/bioinformatics/bty698.

PMID:
30102408
11.

Reproductive period and epigenetic modifications of the oxidative phosphorylation pathway in the human prefrontal cortex.

Bove RM, Patrick E, Aubin CM, Srivastava G, Schneider JA, Bennett DA, De Jager PL, Chibnik LB.

PLoS One. 2018 Jul 27;13(7):e0199073. doi: 10.1371/journal.pone.0199073. eCollection 2018.

12.

Polygenic analysis of inflammatory disease variants and effects on microglia in the aging brain.

Felsky D, Patrick E, Schneider JA, Mostafavi S, Gaiteri C, Patsopoulos N, Bennett DA, De Jager PL.

Mol Neurodegener. 2018 Jul 24;13(1):38. doi: 10.1186/s13024-018-0272-6.

13.

Chemical warfare between leafcutter ant symbionts and a co-evolved pathogen.

Heine D, Holmes NA, Worsley SF, Santos ACA, Innocent TM, Scherlach K, Patrick EH, Yu DW, Murrell JC, Vieria PC, Boomsma JJ, Hertweck C, Hutchings MI, Wilkinson B.

Nat Commun. 2018 Jun 7;9(1):2208. doi: 10.1038/s41467-018-04520-1.

14.

A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer's disease.

Mostafavi S, Gaiteri C, Sullivan SE, White CC, Tasaki S, Xu J, Taga M, Klein HU, Patrick E, Komashko V, McCabe C, Smith R, Bradshaw EM, Root DE, Regev A, Yu L, Chibnik LB, Schneider JA, Young-Pearse TL, Bennett DA, De Jager PL.

Nat Neurosci. 2018 Jun;21(6):811-819. doi: 10.1038/s41593-018-0154-9. Epub 2018 May 25.

15.

A transcriptomic atlas of aged human microglia.

Olah M, Patrick E, Villani AC, Xu J, White CC, Ryan KJ, Piehowski P, Kapasi A, Nejad P, Cimpean M, Connor S, Yung CJ, Frangieh M, McHenry A, Elyaman W, Petyuk V, Schneider JA, Bennett DA, De Jager PL, Bradshaw EM.

Nat Commun. 2018 Feb 7;9(1):539. doi: 10.1038/s41467-018-02926-5.

16.

Views on the Mental Health Act from the frontline.

Patrick EA, Udo I.

BMJ. 2017 Dec 19;359:j5767. doi: 10.1136/bmj.j5767. No abstract available.

PMID:
29258995
17.

An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.

Ng B, White CC, Klein HU, Sieberts SK, McCabe C, Patrick E, Xu J, Yu L, Gaiteri C, Bennett DA, Mostafavi S, De Jager PL.

Nat Neurosci. 2017 Oct;20(10):1418-1426. doi: 10.1038/nn.4632. Epub 2017 Sep 4.

18.

Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer's disease.

Patrick E, Rajagopal S, Wong HA, McCabe C, Xu J, Tang A, Imboywa SH, Schneider JA, Pochet N, Krichevsky AM, Chibnik LB, Bennett DA, De Jager PL.

Mol Neurodegener. 2017 Jul 1;12(1):51. doi: 10.1186/s13024-017-0191-y.

19.

Taking Kidneys for Granted? Time to Reflect on the Choices We Make.

Wong G, Howell M, Patrick E, Yang J.

Transplantation. 2017 Dec;101(12):2812-2813. doi: 10.1097/TP.0000000000001850. No abstract available.

PMID:
28640067
20.

Genome Analysis of Two Pseudonocardia Phylotypes Associated with Acromyrmex Leafcutter Ants Reveals Their Biosynthetic Potential.

Holmes NA, Innocent TM, Heine D, Bassam MA, Worsley SF, Trottmann F, Patrick EH, Yu DW, Murrell JC, Schiøtt M, Wilkinson B, Boomsma JJ, Hutchings MI.

Front Microbiol. 2016 Dec 26;7:2073. doi: 10.3389/fmicb.2016.02073. eCollection 2016.

21.

The RNA helicase Mtr4p is a duplex-sensing translocase.

Patrick EM, Srinivasan S, Jankowsky E, Comstock MJ.

Nat Chem Biol. 2017 Jan;13(1):99-104. doi: 10.1038/nchembio.2234. Epub 2016 Nov 21.

PMID:
27870836
22.

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types.

Patrick E, Schramm SJ, Ormerod JT, Scolyer RA, Mann GJ, Mueller S, Yang JY.

Oncotarget. 2017 Jan 10;8(2):2807-2815. doi: 10.18632/oncotarget.13203.

23.

Phonological Encoding in Mandarin Chinese: Evidence from Tongue Twisters.

Kember H, Croot K, Patrick E.

Lang Speech. 2015 Dec;58(Pt 4):417-40.

PMID:
27483738
24.

KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis.

Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang JY.

Proteomics. 2016 Jul;16(13):1868-71. doi: 10.1002/pmic.201600068. Epub 2016 May 27.

25.

Multiple Integrated Complementary Healing Approaches: Energetics & Light for bone.

Gray MG, Lackey BR, Patrick EF, Gray SL, Hurley SG.

Med Hypotheses. 2016 Jan;86:18-29. doi: 10.1016/j.mehy.2015.10.030. Epub 2015 Nov 24.

PMID:
26804592
26.

Changes in Skiing and Snowboarding Injury Epidemiology and Attitudes to Safety in Big Sky, Montana, USA: A Comparison of 2 Cross-sectional Studies in 1996 and 2013.

Patrick E, Cooper JG, Daniels J.

Orthop J Sports Med. 2015 Jun 24;3(6):2325967115588280. doi: 10.1177/2325967115588280. eCollection 2015 Jun.

27.

Elucidating time-dependent changes in the urinary metabolome of renal transplant patients by a combined (1)H NMR and GC-MS approach.

Kienana M, Lydie ND, Jean-Michel H, Binta D, Matthias B, Patrick E, Hélène B, Chantal le G.

Mol Biosyst. 2015 Sep;11(9):2493-510. doi: 10.1039/c5mb00108k. Epub 2015 Jul 10. Erratum in: Mol Biosyst. 2017 Jan 31;13(2):432.

PMID:
26161811
28.

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.

Patrick E, Buckley M, Müller S, Lin DM, Yang JY.

Bioinformatics. 2015 Sep 1;31(17):2822-8. doi: 10.1093/bioinformatics/btv220. Epub 2015 Apr 24.

29.

MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis.

Tembe V, Schramm SJ, Stark MS, Patrick E, Jayaswal V, Tang YH, Barbour A, Hayward NK, Thompson JF, Scolyer RA, Yang YH, Mann GJ.

Pigment Cell Melanoma Res. 2015 May;28(3):254-66. doi: 10.1111/pcmr.12343. Epub 2015 Jan 5.

PMID:
25490969
31.

Specificity of herbivore-induced hormonal signaling and defensive traits in five closely related milkweeds (Asclepias spp.).

Agrawal AA, Hastings AP, Patrick ET, Knight AC.

J Chem Ecol. 2014 Jul;40(7):717-29. doi: 10.1007/s10886-014-0449-6. Epub 2014 May 27.

PMID:
24863490
32.

Electrode impedance analysis of chronic tungsten microwire neural implants: understanding abiotic vs. biotic contributions.

Sankar V, Patrick E, Dieme R, Sanchez JC, Prasad A, Nishida T.

Front Neuroeng. 2014 May 8;7:13. doi: 10.3389/fneng.2014.00013. eCollection 2014.

33.

Single-Molecule Fluorescence Using Nucleotide Analogs: A Proof-of-Principle.

Alemán EA, de Silva C, Patrick EM, Musier-Forsyth K, Rueda D.

J Phys Chem Lett. 2014 Mar 6;5(5):777-781. Epub 2014 Feb 6.

34.

Regulation of antimycin biosynthesis by the orphan ECF RNA polymerase sigma factor σ (AntA.).

Seipke RF, Patrick E, Hutchings MI.

PeerJ. 2014 Feb 6;2:e253. doi: 10.7717/peerj.253. eCollection 2014.

35.

Participant supervision: supervisor and supervisee experiences of cotherapy.

Falke SI, Lawson L, Pandit ML, Patrick EA.

J Marital Fam Ther. 2015 Apr;41(2):150-62. doi: 10.1111/jmft.12039. Epub 2013 Jul 30.

PMID:
24571235
36.

Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent.

O'Connor KS, Parnell G, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang JY, Stewart GJ, Liddle C, George J, Booth DR.

Genes Immun. 2014 Mar;15(2):88-94. doi: 10.1038/gene.2013.66. Epub 2014 Jan 16.

PMID:
24335707
37.

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.

Yang P, Patrick E, Tan SX, Fazakerley DJ, Burchfield J, Gribben C, Prior MJ, James DE, Hwa Yang Y.

Bioinformatics. 2014 Mar 15;30(6):808-14. doi: 10.1093/bioinformatics/btt616. Epub 2013 Oct 27.

38.

A cohort study in university students: investigation of risk factors for cytomegalovirus infection.

Patrick EJ, Higgins CD, Crawford DH, McAulay KA.

Epidemiol Infect. 2014 Sep;142(9):1990-5. doi: 10.1017/S0950268813002720. Epub 2013 Oct 25.

PMID:
24160893
39.

Visualization of the diaphragm muscle with ultrasound improves diagnostic accuracy of phrenic nerve conduction studies.

Johnson NE, Utz M, Patrick E, Rheinwald N, Downs M, Dilek N, Dogra V, Logigian EL.

Muscle Nerve. 2014 May;49(5):669-75. doi: 10.1002/mus.24059. Epub 2014 Apr 8.

PMID:
24037990
40.

GnRH receptor antagonists for prostate cancer.

Patrick E, Whitson M, Smith A, Parnell J, Thomas SE, Blankenship CC.

JAAPA. 2013 Jul;26(7):51-2. Review.

PMID:
23923287
41.

Household air pollution in low- and middle-income countries: health risks and research priorities.

Martin WJ 2nd, Glass RI, Araj H, Balbus J, Collins FS, Curtis S, Diette GB, Elwood WN, Falk H, Hibberd PL, Keown SE, Mehta S, Patrick E, Rosenbaum J, Sapkota A, Tolunay HE, Bruce NG.

PLoS Med. 2013;10(6):e1001455. doi: 10.1371/journal.pmed.1001455. Epub 2013 Jun 4. No abstract available.

42.

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.

Patrick E, Buckley M, Lin DM, Yang YH.

BMC Genomics. 2013;14 Suppl 1:S9. doi: 10.1186/1471-2164-14-S1-S9. Epub 2013 Jan 21.

43.

Measurements of human herpesvirus 8 viral load in blood before and after leukoreduction filtration.

Dollard SC, Roback JD, Gunthel C, Amin MM, Barclay S, Patrick E, Kuehnert MJ.

Transfusion. 2013 Oct;53(10):2164-7. doi: 10.1111/trf.12108. Epub 2013 Jan 30.

PMID:
23362994
44.

Estimation of data-specific constitutive exons with RNA-Seq data.

Patrick E, Buckley M, Yang YH.

BMC Bioinformatics. 2013 Jan 29;14:31. doi: 10.1186/1471-2105-14-31.

45.

Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects.

Tonks KT, Ng Y, Miller S, Coster AC, Samocha-Bonet D, Iseli TJ, Xu A, Patrick E, Yang JY, Junutula JR, Modrusan Z, Kolumam G, Stöckli J, Chisholm DJ, James DE, Greenfield JR.

Diabetologia. 2013 Apr;56(4):875-85. doi: 10.1007/s00125-012-2811-y. Epub 2013 Jan 24.

PMID:
23344726
46.

A prototype mass spectrometer for in situ analysis of cave atmospheres.

Patrick EL, Mandt KE, Mitchell EJ, Mitchell JN, Younkin KN, Seifert CM, Williams GC.

Rev Sci Instrum. 2012 Oct;83(10):105116. doi: 10.1063/1.4761927.

PMID:
23126813
47.

Role of magnetic resonance imaging, cerebrospinal fluid, and electroencephalogram in diagnosis of sporadic Creutzfeldt-Jakob disease.

Wang LH, Bucelli RC, Patrick E, Rajderkar D, Alvarez Iii E, Lim MM, Debruin G, Sharma V, Dahiya S, Schmidt RE, Benzinger TS, Ward BA, Ances BM.

J Neurol. 2013 Feb;260(2):498-506. doi: 10.1007/s00415-012-6664-6. Epub 2012 Sep 12.

48.

Assessing the risk of birth defects associated with exposure to fixed-dose combined antituberculous agents during pregnancy in rats.

Awodele O, Patrick EB, Oluwatoyin Agbaje E, Oremosu AA, Gbotolorun SC.

ScientificWorldJournal. 2012;2012:585094. doi: 10.1100/2012/585094. Epub 2012 May 3.

49.

ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR.

Appia-Ayme C, Hall A, Patrick E, Rajadurai S, Clarke TA, Rowley G.

Biochem J. 2012 Feb 15;442(1):85-93. doi: 10.1042/BJ20111639.

PMID:
22084975
50.

Novel inducers of the envelope stress response BaeSR in Salmonella Typhimurium: BaeR is critically required for tungstate waste disposal.

Appia-Ayme C, Patrick E, Sullivan MJ, Alston MJ, Field SJ, AbuOun M, Anjum MF, Rowley G.

PLoS One. 2011;6(8):e23713. doi: 10.1371/journal.pone.0023713. Epub 2011 Aug 23.

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