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Items: 1 to 50 of 99

1.

Identification of metabolites of novel Anti-MRSA fluoroquinolone WCK 771 in mice, rat, rabbit, dog, monkey and human urine using liquid chromatography tandem mass spectrometry.

Yeole RD, Rane VP, Ahirrao VK, Chavan RP, Patel AM, Deshpande PK, Patel MV, Patil KR.

Biomed Chromatogr. 2019 Mar 12:e4532. doi: 10.1002/bmc.4532. [Epub ahead of print]

PMID:
30861568
2.

Disulfiram and Its Copper Chelate Attenuate Cisplatin-Induced Acute Nephrotoxicity in Rats Via Reduction of Oxidative Stress and Inflammation.

Khairnar SI, Mahajan UB, Patil KR, Patel HM, Shinde SD, Goyal SN, Belemkar S, Ojha S, Patil CR.

Biol Trace Elem Res. 2019 Mar 1. doi: 10.1007/s12011-019-01683-w. [Epub ahead of print]

PMID:
30825159
3.

Multimodal Parcellations and Extensive Behavioral Profiling Tackling the Hippocampus Gradient.

Plachti A, Eickhoff SB, Hoffstaedter F, Patil KR, Laird AR, Fox PT, Amunts K, Genon S.

Cereb Cortex. 2019 Feb 4. doi: 10.1093/cercor/bhy336. [Epub ahead of print]

PMID:
30721944
4.

Low Phenotypic Penetrance and Technological Impact of Yeast [GAR +] Prion-Like Elements on Winemaking.

Gonzalez R, Tronchoni J, Mencher A, Curiel JA, Rodrigues AJ, López-Berges L, Juez C, Patil KR, Jouhten P, Gallego N, Omarini A, Fernández-Preisegger M, Morales P.

Front Microbiol. 2019 Jan 9;9:3311. doi: 10.3389/fmicb.2018.03311. eCollection 2018.

5.

Antibiotics-induced monodominance of a novel gut bacterial order.

Hildebrand F, Moitinho-Silva L, Blasche S, Jahn MT, Gossmann TI, Heuerta-Cepas J, Hercog R, Luetge M, Bahram M, Pryszlak A, Alves RJ, Waszak SM, Zhu A, Ye L, Costea PI, Aalvink S, Belzer C, Forslund SK, Sunagawa S, Hentschel U, Merten C, Patil KR, Benes V, Bork P.

Gut. 2019 Jan 18. pii: gutjnl-2018-317715. doi: 10.1136/gutjnl-2018-317715. [Epub ahead of print]

6.

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.

Xavier JC, Patil KR, Rocha I.

PLoS Comput Biol. 2018 Nov 16;14(11):e1006556. doi: 10.1371/journal.pcbi.1006556. eCollection 2018 Nov.

7.

Ultra-diluted Toxicodendron pubescens attenuates pro-inflammatory cytokines and ROS- mediated neuropathic pain in rats.

Magar S, Nayak D, Mahajan UB, Patil KR, Shinde SD, Goyal SN, Swaminarayan S, Patil CR, Ojha S, Kundu CN.

Sci Rep. 2018 Sep 10;8(1):13562. doi: 10.1038/s41598-018-31971-9.

8.

Freeing Yeast from Alcohol Addiction (Just) to Make (It) Fat Instead.

Patil KR, Ralser M.

Cell. 2018 Sep 6;174(6):1342-1344. doi: 10.1016/j.cell.2018.08.024.

PMID:
30193107
9.

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities.

Machado D, Andrejev S, Tramontano M, Patil KR.

Nucleic Acids Res. 2018 Sep 6;46(15):7542-7553. doi: 10.1093/nar/gky537.

10.

Prediction of outcome after aneurysmal subarachnoid haemorrhage using data from patient admission.

Rubbert C, Patil KR, Beseoglu K, Mathys C, May R, Kaschner MG, Sigl B, Teichert NA, Boos J, Turowski B, Caspers J.

Eur Radiol. 2018 Dec;28(12):4949-4958. doi: 10.1007/s00330-018-5505-0. Epub 2018 Jun 12.

PMID:
29948072
11.

Development and Validation of the Chiral Liquid Chromatography Method for Separation of Enantiomeric Impurity in Novel Oxazolidinone Antibacterial Agent WCK 4086.

Ahirrao VK, Rane VP, Patil KR, Patil VJ, Yeole RD, Patel MV.

J Chromatogr Sci. 2018 Oct 1;56(9):789-793. doi: 10.1093/chromsci/bmy052.

PMID:
29931104
12.

D-pinitol attenuates cisplatin-induced nephrotoxicity in rats: Impact on pro-inflammatory cytokines.

Vasaikar N, Mahajan U, Patil KR, Suchal K, Patil CR, Ojha S, Goyal SN.

Chem Biol Interact. 2018 Jun 25;290:6-11. doi: 10.1016/j.cbi.2018.05.003. Epub 2018 May 9.

PMID:
29752894
13.

Predicting personality from network-based resting-state functional connectivity.

Nostro AD, Müller VI, Varikuti DP, Pläschke RN, Hoffstaedter F, Langner R, Patil KR, Eickhoff SB.

Brain Struct Funct. 2018 Jul;223(6):2699-2719. doi: 10.1007/s00429-018-1651-z. Epub 2018 Mar 23.

14.

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR.

Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9. Epub 2018 Mar 19.

PMID:
29556107
15.

Extensive impact of non-antibiotic drugs on human gut bacteria.

Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, Typas A.

Nature. 2018 Mar 29;555(7698):623-628. doi: 10.1038/nature25979. Epub 2018 Mar 19.

16.

Laboratory evolution reveals regulatory and metabolic trade-offs of glycerol utilization in Saccharomyces cerevisiae.

Strucko T, Zirngibl K, Pereira F, Kafkia E, Mohamed ET, Rettel M, Stein F, Feist AM, Jouhten P, Patil KR, Forster J.

Metab Eng. 2018 May;47:73-82. doi: 10.1016/j.ymben.2018.03.006. Epub 2018 Mar 10.

17.

Evaluation of non-negative matrix factorization of grey matter in age prediction.

Varikuti DP, Genon S, Sotiras A, Schwender H, Hoffstaedter F, Patil KR, Jockwitz C, Caspers S, Moebus S, Amunts K, Davatzikos C, Eickhoff SB.

Neuroimage. 2018 Jun;173:394-410. doi: 10.1016/j.neuroimage.2018.03.007. Epub 2018 Mar 6.

18.

A simple plug-in bagging ensemble based on threshold-moving for classifying binary and multiclass imbalanced data.

Collell G, Prelec D, Patil KR.

Neurocomputing. 2018 Jan 31;275:330-340. doi: 10.1016/j.neucom.2017.08.035.

19.

Conjugative transposition of the vancomycin resistance carrying Tn1549: enzymatic requirements and target site preferences.

Lambertsen L, Rubio-Cosials A, Patil KR, Barabas O.

Mol Microbiol. 2018 Mar;107(5):639-658. doi: 10.1111/mmi.13905. Epub 2018 Jan 18.

PMID:
29271522
20.

Towards standards for human fecal sample processing in metagenomic studies.

Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung FE, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, van Hylckama Vlieg J, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao L, Zoetendal EG, Ehrlich SD, Dore J, Bork P.

Nat Biotechnol. 2017 Nov;35(11):1069-1076. doi: 10.1038/nbt.3960. Epub 2017 Oct 2.

PMID:
28967887
21.

Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow.

Ponomarova O, Gabrielli N, Sévin DC, Mülleder M, Zirngibl K, Bulyha K, Andrejev S, Kafkia E, Typas A, Sauer U, Ralser M, Patil KR.

Cell Syst. 2017 Oct 25;5(4):345-357.e6. doi: 10.1016/j.cels.2017.09.002. Epub 2017 Sep 27.

22.

Draft Genome Sequences of Three Novel Low-Abundance Species Strains Isolated from Kefir Grain.

Kim Y, Blasche S, Patil KR.

Genome Announc. 2017 Sep 28;5(39). pii: e00869-17. doi: 10.1128/genomeA.00869-17.

23.

Integration and Segregation of Default Mode Network Resting-State Functional Connectivity in Transition-Age Males with High-Functioning Autism Spectrum Disorder: A Proof-of-Concept Study.

Joshi G, Arnold Anteraper S, Patil KR, Semwal M, Goldin RL, Furtak SL, Chai XJ, Saygin ZM, Gabrieli JDE, Biederman J, Whitfield-Gabrieli S.

Brain Connect. 2017 Nov;7(9):558-573. doi: 10.1089/brain.2016.0483.

PMID:
28942672
24.

Draft Genome Sequence of Corynebacterium kefirresidentii SB, Isolated from Kefir.

Blasche S, Kim Y, Patil KR.

Genome Announc. 2017 Sep 14;5(37). pii: e00877-17. doi: 10.1128/genomeA.00877-17.

25.

Past and current perspective on new therapeutic targets for Type-II diabetes.

Patil PD, Mahajan UB, Patil KR, Chaudhari S, Patil CR, Agrawal YO, Ojha S, Goyal SN.

Drug Des Devel Ther. 2017 May 22;11:1567-1583. doi: 10.2147/DDDT.S133453. eCollection 2017. Review.

26.

Metabolic shifts in residual breast cancer drive tumor recurrence.

Havas KM, Milchevskaya V, Radic K, Alladin A, Kafkia E, Garcia M, Stolte J, Klaus B, Rotmensz N, Gibson TJ, Burwinkel B, Schneeweiss A, Pruneri G, Patil KR, Sotillo R, Jechlinger M.

J Clin Invest. 2017 Jun 1;127(6):2091-2105. doi: 10.1172/JCI89914. Epub 2017 May 15.

27.

Metabolic anchor reactions for robust biorefining.

Jouhten P, Huerta-Cepas J, Bork P, Patil KR.

Metab Eng. 2017 Mar;40:1-4. doi: 10.1016/j.ymben.2017.02.010. Epub 2017 Feb 21.

28.

Anti-inflammatory activity of bartogenic acid containing fraction of fruits of Barringtonia racemosa Roxb. in acute and chronic animal models of inflammation.

Patil KR, Patil CR.

J Tradit Complement Med. 2016 Apr 4;7(1):86-93. doi: 10.1016/j.jtcme.2016.02.001. eCollection 2017 Jan.

29.

Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes.

Xavier JC, Patil KR, Rocha I.

Metab Eng. 2017 Jan;39:200-208. doi: 10.1016/j.ymben.2016.12.002. Epub 2016 Dec 8.

30.

Chemomodulatory Potential of Bartogenic Acid Against DMBA/Croton Oil Induced Two-Step Skin Carcinogenesis in Mice.

Patil CR, Sonara BM, Mahajan UB, Patil KR, Patil DD, Jadhav RB, Goyal SN, Ojha S.

J Cancer. 2016 Oct 23;7(14):2139-2147. eCollection 2016.

31.

Saccharomyces cerevisiae metabolism in ecological context.

Jouhten P, Ponomarova O, Gonzalez R, Patil KR.

FEMS Yeast Res. 2016 Nov;16(7). pii: fow080. Epub 2016 Sep 14. Review.

32.

The metabolic background is a global player in Saccharomyces gene expression epistasis.

Alam MT, Zelezniak A, Mülleder M, Shliaha P, Schwarz R, Capuano F, Vowinckel J, Radmanesfahar E, Krüger A, Calvani E, Michel S, Börno S, Christen S, Patil KR, Timmermann B, Lilley KS, Ralser M.

Nat Microbiol. 2016 Feb 1;1:15030. doi: 10.1038/nmicrobiol.2015.30.

33.

Yeast metabolic chassis designs for diverse biotechnological products.

Jouhten P, Boruta T, Andrejev S, Pereira F, Rocha I, Patil KR.

Sci Rep. 2016 Jul 19;6:29694. doi: 10.1038/srep29694.

34.

Midterm survivorship and clinical outcome of INDUS knee prosthesis: 5 year followup study.

Sancheti KH, Sancheti PK, Joshi RS, Patil KR, Shyam AK, Bhaskar RR.

Indian J Orthop. 2016 Mar-Apr;50(2):131-5. doi: 10.4103/0019-5413.177583.

35.

Chitinases and Imaginal disc growth factors organize the extracellular matrix formation at barrier tissues in insects.

Pesch YY, Riedel D, Patil KR, Loch G, Behr M.

Sci Rep. 2016 Feb 3;6:18340. doi: 10.1038/srep18340.

36.

Challenges and issues with streptozotocin-induced diabetes - A clinically relevant animal model to understand the diabetes pathogenesis and evaluate therapeutics.

Goyal SN, Reddy NM, Patil KR, Nakhate KT, Ojha S, Patil CR, Agrawal YO.

Chem Biol Interact. 2016 Jan 25;244:49-63. doi: 10.1016/j.cbi.2015.11.032. Epub 2015 Dec 2. Review.

PMID:
26656244
37.

Do genome-scale models need exact solvers or clearer standards?

Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I.

Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. No abstract available.

38.

Architecturally designed Pt-MoS2 and Pt-graphene composites for electrocatalytic methanol oxidation.

Patil SH, Anothumakkool B, Sathaye SD, Patil KR.

Phys Chem Chem Phys. 2015 Oct 21;17(39):26101-10. doi: 10.1039/c5cp04141d. Epub 2015 Sep 17.

PMID:
26377752
39.

Metabolic interactions in microbial communities: untangling the Gordian knot.

Ponomarova O, Patil KR.

Curr Opin Microbiol. 2015 Oct;27:37-44. doi: 10.1016/j.mib.2015.06.014. Epub 2015 Jul 24. Review.

40.

Phytocannabinoids for Cancer Therapeutics: Recent Updates and Future Prospects.

Patil KR, Goyal SN, Sharma C, Patil CR, Ojha S.

Curr Med Chem. 2015;22(30):3472-501. Review.

PMID:
26179998
41.

Metabolic dependencies drive species co-occurrence in diverse microbial communities.

Zelezniak A, Andrejev S, Ponomarova O, Mende DR, Bork P, Patil KR.

Proc Natl Acad Sci U S A. 2015 May 19;112(20):6449-54. doi: 10.1073/pnas.1421834112. Epub 2015 May 4. Erratum in: Proc Natl Acad Sci U S A. 2015 Dec 22;112(51):E7156.

42.

Pentacyclic Triterpenoids Inhibit IKKβ Mediated Activation of NF-κB Pathway: In Silico and In Vitro Evidences.

Patil KR, Mohapatra P, Patel HM, Goyal SN, Ojha S, Kundu CN, Patil CR.

PLoS One. 2015 May 4;10(5):e0125709. doi: 10.1371/journal.pone.0125709. eCollection 2015.

43.

Shape-selective oriented cerium oxide nanocrystals permit assessment of the effect of the exposed facets on catalytic activity and oxygen storage capacity.

Sreeremya TS, Krishnan A, Remani KC, Patil KR, Brougham DF, Ghosh S.

ACS Appl Mater Interfaces. 2015 Apr 29;7(16):8545-55. doi: 10.1021/acsami.5b00298. Epub 2015 Apr 17.

PMID:
25831073
44.

A method to form semiconductor quantum dot (QD) thin films by igniting a flame at air-liquid interface: CdS and WO3.

Jadhav AH, Patil SH, Sathaye SD, Patil KR.

J Colloid Interface Sci. 2015 Feb 1;439:121-8. doi: 10.1016/j.jcis.2014.10.029. Epub 2014 Oct 30.

PMID:
25463183
45.

Systems biology perspectives on minimal and simpler cells.

Xavier JC, Patil KR, Rocha I.

Microbiol Mol Biol Rev. 2014 Sep;78(3):487-509. doi: 10.1128/MMBR.00050-13. Review.

46.

Nitrogen-induced surface area and conductivity modulation of carbon nanohorn and its function as an efficient metal-free oxygen reduction electrocatalyst for anion-exchange membrane fuel cells.

Unni SM, Bhange SN, Illathvalappil R, Mutneja N, Patil KR, Kurungot S.

Small. 2015 Jan 21;11(3):352-60. doi: 10.1002/smll.201303892. Epub 2014 Aug 22.

PMID:
25155361
47.

Contribution of network connectivity in determining the relationship between gene expression and metabolite concentration changes.

Zelezniak A, Sheridan S, Patil KR.

PLoS Comput Biol. 2014 Apr 24;10(4):e1003572. doi: 10.1371/journal.pcbi.1003572. eCollection 2014 Apr.

48.

Model-guided identification of gene deletion targets for metabolic engineering in Saccharomyces cerevisiae.

Brochado AR, Patil KR.

Methods Mol Biol. 2014;1152:281-94. doi: 10.1007/978-1-4939-0563-8_17.

PMID:
24744040
49.

Computational tools for modeling xenometabolism of the human gut microbiota.

Klünemann M, Schmid M, Patil KR.

Trends Biotechnol. 2014 Mar;32(3):157-65. doi: 10.1016/j.tibtech.2014.01.005. Epub 2014 Feb 13. Review.

PMID:
24529988
50.

Vapor-liquid-solid growth of one-dimensional tin sulfide (SnS) nanostructures with promising field emission behavior.

Suryawanshi SR, Warule SS, Patil SS, Patil KR, More MA.

ACS Appl Mater Interfaces. 2014 Feb 12;6(3):2018-25. doi: 10.1021/am405039j. Epub 2014 Jan 27.

PMID:
24432697

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