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Correlation of ROS1 Immunohistochemistry With ROS1 Fusion Status Determined by Fluorescence In Situ Hybridization.

Huang RSP, Smith D, Le CH, Liu WW, Ordinario E, Manohar C, Lee M, Rajamani J, Truong H, Li J, Choi C, Li J, Pati A, Bubendorf L, Buettner R, Kerr KM, Lopez-Rios F, Marchetti A, Marondel I, Nicholson AG, Öz AB, Pauwels P, Penault-Llorca F, Rossi G, Thunnissen E, Newell AH, Pate G, Menzl I.

Arch Pathol Lab Med. 2019 Sep 11. doi: 10.5858/arpa.2019-0085-OA. [Epub ahead of print]


Spatiotemporal variability in activity patterns of urban street cattle as function of environmental factors.

Sahu BK, Parganiha A, Pati AK.

Chronobiol Int. 2019 Oct;36(10):1362-1372. doi: 10.1080/07420528.2019.1644345. Epub 2019 Aug 1.


The Presence of Pericholedochal Hyaline Cartilage in Biliary Atresia: A Report and A Review.

Ayyanar P, Mahalik SK, Pati AB, Mitra S.

Fetal Pediatr Pathol. 2019 Jul 17:1-7. doi: 10.1080/15513815.2019.1639091. [Epub ahead of print]


Photophysical Impact of Diacetylenic Conjugation on Classical Donor-Acceptor Electronic Energy Pair.

Singh A, Pati AK, Mishra AK.

J Phys Chem A. 2019 Jan 17;123(2):443-453. doi: 10.1021/acs.jpca.8b09689. Epub 2019 Jan 3.


Panoramic radiograph as a forensic aid in age and gender estimation: Preliminary retrospective study.

Bhuyan R, Mohanty S, Bhuyan SK, Pati A, Priyadarshini S, Das P.

J Oral Maxillofac Pathol. 2018 May-Aug;22(2):266-270. doi: 10.4103/jomfp.JOMFP_90_17.


Quantum speed limit constraints on a nanoscale autonomous refrigerator.

Mukhopadhyay C, Misra A, Bhattacharya S, Pati AK.

Phys Rev E. 2018 Jun;97(6-1):062116. doi: 10.1103/PhysRevE.97.062116.


Hospitalization-induced exacerbation of the ill effects of chemotherapy on rest-activity rhythm and quality of life of breast cancer patients: a prospective and comparative cross-sectional follow-up study.

Sultan A, Pati AK, Choudhary V, Parganiha A.

Chronobiol Int. 2018 Oct;35(11):1513-1532. doi: 10.1080/07420528.2018.1493596. Epub 2018 Jul 9.


Masking Quantum Information is Impossible.

Modi K, Pati AK, Sen De A, Sen U.

Phys Rev Lett. 2018 Jun 8;120(23):230501. doi: 10.1103/PhysRevLett.120.230501.


Photoinduced intramolecular charge transfer in a cross-conjugated push-pull enediyne: implications toward photoreaction.

Singh A, Pati AK, Mishra AK.

Phys Chem Chem Phys. 2018 May 30;20(21):14889-14898. doi: 10.1039/c8cp01745j.


Role of ultrasound guided transversus abdominis plane block as a component of multimodal analgesic regimen for lower segment caesarean section: a randomized double blind clinical study.

Jadon A, Jain P, Chakraborty S, Motaka M, Parida SS, Sinha N, Agrawal A, Pati AK.

BMC Anesthesiol. 2018 May 14;18(1):53. doi: 10.1186/s12871-018-0512-x.


An integrated workflow for phenazine-modifying enzyme characterization.

Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, Dangl JL, Pati A, Weller D, Northen TR, Cheng JF, Mouncey NJ, Deutsch S, Yoshikuni Y.

J Ind Microbiol Biotechnol. 2018 Jul;45(7):567-577. doi: 10.1007/s10295-018-2025-5. Epub 2018 Mar 15.


A new case of autosomal dominant small vessel disease carrying a novel heterozygous mutation in HTRA1 gene: 2-year follow-up.

Pati AR, Battisti C, Taglia I, Galluzzi P, Bianchi M, Federico A.

Neurol Sci. 2018 Aug;39(8):1479-1481. doi: 10.1007/s10072-018-3294-5. Epub 2018 Mar 15. No abstract available.


Generalized Hardy's Paradox.

Jiang SH, Xu ZP, Su HY, Pati AK, Chen JL.

Phys Rev Lett. 2018 Feb 2;120(5):050403. doi: 10.1103/PhysRevLett.120.050403.


Photophysics and peripheral ring size dependent aggregate emission of cross-conjugated enediynes: applications to white light emission and vapor sensing.

Singh A, Pati AK, Mishra AK.

Phys Chem Chem Phys. 2018 Feb 7;20(6):4167-4180. doi: 10.1039/c7cp08091c.


Levels of oxidative damage and proinflammatory cytokines are enhanced in patients with active vitiligo.

Mitra S, De Sarkar S, Pradhan A, Pati AK, Pradhan R, Mondal D, Sen S, Ghosh A, Chatterjee S, Chatterjee M.

Free Radic Res. 2017 Dec;51(11-12):986-994. doi: 10.1080/10715762.2017.1402303.


Maximum Relative Entropy of Coherence: An Operational Coherence Measure.

Bu K, Singh U, Fei SM, Pati AK, Wu J.

Phys Rev Lett. 2017 Oct 13;119(15):150405. doi: 10.1103/PhysRevLett.119.150405. Epub 2017 Oct 13.


High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

Osman WAM, van Berkum P, León-Barrios M, Velázquez E, Elia P, Tian R, Ardley J, Gollagher M, Seshadri R, Reddy TBK, Ivanova N, Woyke T, Pati A, Markowitz V, Baeshen MN, Baeshen NN, Kyrpides N, Reeve W.

Stand Genomic Sci. 2017 Sep 25;12:58. doi: 10.1186/s40793-017-0270-2. eCollection 2017.


In-silico analysis of cis-acting regulatory elements of pathogenesis-related proteins of Arabidopsis thaliana and Oryza sativa.

Kaur A, Pati PK, Pati AM, Nagpal AK.

PLoS One. 2017 Sep 14;12(9):e0184523. doi: 10.1371/journal.pone.0184523. eCollection 2017.


Experimental test of uncertainty relations for general unitary operators.

Xiao L, Wang K, Zhan X, Bian Z, Li J, Zhang Y, Xue P, Pati AK.

Opt Express. 2017 Jul 24;25(15):17904-17910. doi: 10.1364/OE.25.017904.


Effects of co-treatment with pioglitazone and methotrexate on experimentally induced rheumatoid arthritis in Wistar albino rats.

Roy T, Banerjee I, Ghosh S, Dhali RS, De Pati A, Tripathi SK.

Indian J Pharmacol. 2017 Mar-Apr;49(2):168-175. doi: 10.4103/ijp.IJP_523_15.


Postoperative alar base symmetry in complete unilateral cleft lip and palate:A prospective study.

Vyloppilli S, Krishnakumar KS, Sayd S, Latheef S, Narayanan SV, Pati A.

J Plast Reconstr Aesthet Surg. 2017 Nov;70(11):1614-1619. doi: 10.1016/j.bjps.2017.05.052. Epub 2017 Jun 9.


1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.

Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC.

Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12.


Neuroendocrine lung cancer in a patient with limbic encephalopathy due to anti-Hu antibodies: A rare association not to be missed.

Pati AR, Battisti C, Tripodi SA, Cerase A, Vella A, Guidi L, Mignarri A, Dotti MT, Federico A.

J Neurol Sci. 2017 Jul 15;378:91-93. doi: 10.1016/j.jns.2017.04.032. Epub 2017 Apr 20. No abstract available.


Adaptive super-twisting sliding mode control for a three-phase single-stage grid-connected differential boost inverter based photovoltaic system.

Pati AK, Sahoo NC.

ISA Trans. 2017 Jul;69:296-306. doi: 10.1016/j.isatra.2017.05.002. Epub 2017 May 12.


Species composition of microzooplankton Tintinnid from the coastal waters of Digha, Bay of Bengal.

Dash S, Behera RK, Mohapatra PK, Sarangi RK, Raut D, Pati A, Patnaik L.

Environ Monit Assess. 2017 Jun;189(6):258. doi: 10.1007/s10661-017-5961-z. Epub 2017 May 6.


Polyneuropathy with demyelinating changes in Churg-Strauss syndrome: an unusual association.

Pati AR, Capecchi PL, Malandrini A, Federico A, Mignarri A.

Neurol Sci. 2017 Apr;38(4):695-697. doi: 10.1007/s10072-016-2789-1. Epub 2016 Dec 26. No abstract available.


Bell's Nonlocality Can be Detected by the Violation of Einstein-Podolsky-Rosen Steering Inequality.

Chen JL, Ren C, Chen C, Ye XJ, Pati AK.

Sci Rep. 2016 Dec 14;6:39063. doi: 10.1038/srep39063.


C9ORF72 gene expansion in a patient with intellectual disability and psychiatric disease.

Pati AR, Battisti C, Battistini S, Ricci C, Trapassi A, Marconi R, Mignarri A, Federico A, Dotti MT.

Neurol Sci. 2017 Jan;38(1):207-208. doi: 10.1007/s10072-016-2709-4. Epub 2016 Sep 19. No abstract available.


An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1(T).

Nicholson WL, Davis CL, Shapiro N, Huntemann M, Clum A, Reddy TB, Pillay M, Markowitz V, Varghese N, Pati A, Ivanova N, Kyrpides N, Woyke T.

Stand Genomic Sci. 2016 Sep 8;11(1):65. doi: 10.1186/s40793-016-0193-3. eCollection 2016.


Genome Sequence of Marinobacter sp. Strain MCTG268 Isolated from the Cosmopolitan Marine Diatom Skeletonema costatum.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Ngan CY, Chovatia M, Daum C, Shapiro N, Cantor MN, Woyke T.

Genome Announc. 2016 Sep 8;4(5). pii: e00937-16. doi: 10.1128/genomeA.00937-16.


Goldenhar Syndrome: A rare case report.

Bhuyan R, Pati AR, Bhuyan SK, Nayak BB.

J Oral Maxillofac Pathol. 2016 May-Aug;20(2):328. doi: 10.4103/0973-029X.185907.


High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains.

Peña A, Busquets A, Gomila M, Mulet M, Gomila RM, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, García-Valdés E, Göker M, Woyke T, Klenk HP, Kyrpides N, Lalucat J.

Stand Genomic Sci. 2016 Sep 1;11(1):55. doi: 10.1186/s40793-016-0178-2. eCollection 2016.


Sharp Contradiction for Local-Hidden-State Model in Quantum Steering.

Chen JL, Su HY, Xu ZP, Pati AK.

Sci Rep. 2016 Aug 26;6:32075. doi: 10.1038/srep32075.


A study of the free radical scavenging effects of Piper betle leaf extract in patients with vitiligo.

Mitra S, Pati AK, Manna A, Ghosh A, Sen S, Chatterjee S, Chatterjee M.

Indian J Dermatol Venereol Leprol. 2017 Jan-Feb;83(1):40-46. doi: 10.4103/0378-6323.187688.


Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.

Gutierrez T, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Pillay M, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Ngan CY, Chovatia M, Daum C, Shapiro N, Cantor MN, Woyke T.

Genome Announc. 2016 Aug 4;4(4). pii: e00765-16. doi: 10.1128/genomeA.00765-16.


Photophysics of Diphenylbutadiynes in Water, Acetonitrile-Water, and Acetonitrile Solvent Systems: Application to Single Component White Light Emission.

Pati AK, Jana R, Gharpure SJ, Mishra AK.

J Phys Chem A. 2016 Jul 28;120(29):5826-37. doi: 10.1021/acs.jpca.6b04954. Epub 2016 Jul 18.


Urothelial Carcinoma in Pediatric Patient.

Pati A, Sahoo RK, Mahapatra A.

Indian J Surg. 2016 Jun;78(3):229-31. doi: 10.1007/s12262-015-1384-7. Epub 2015 Oct 31.


High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

Gehlot HS, Ardley J, Tak N, Tian R, Poonar N, Meghwal RR, Rathi S, Tiwari R, Adnawani W, Seshadri R, Reddy TB, Pati A, Woyke T, Pillay M, Markowitz V, Baeshen MN, Al-Hejin AM, Ivanova N, Kyrpides N, Reeve W.

Stand Genomic Sci. 2016 Jun 23;11:43. doi: 10.1186/s40793-016-0157-7. eCollection 2016.


High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).

Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang S, Tindall BJ, Rohde M, Baeshen MN, Baeshen NA, Lapidus A, Copeland A, Pillay M, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Göker M, Klenk HP, Kyrpides NC, Hahnke RL.

Stand Genomic Sci. 2016 Jun 16;11:42. doi: 10.1186/s40793-016-0159-5. eCollection 2016.


Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005.

Panschin I, Huang S, Meier-Kolthoff JP, Tindall BJ, Rohde M, Verbarg S, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Göker M, Klenk HP, Kyrpides NC, Hahnke RL.

Stand Genomic Sci. 2016 Jun 3;11:37. doi: 10.1186/s40793-016-0163-9. eCollection 2016.


Non Aggressive Mandibular Osteoblastoma- A Rare Maxillofacial Entity.

Panigrahi RG, Bhuyan SK, Pati AR, Priyadarshini SR, Sagar S.

J Clin Diagn Res. 2016 Apr;10(4):ZD06-8. doi: 10.7860/JCDR/2016/13709.7630. Epub 2016 Apr 1.


Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC.

Stand Genomic Sci. 2016 Mar 21;11:27. doi: 10.1186/s40793-016-0148-8. eCollection 2016.


Poultry feed based on protein hydrolysate derived from chrome-tanned leather solid waste: creating value from waste.

Chaudhary R, Pati A.

Environ Sci Pollut Res Int. 2016 Apr;23(8):8120-4. doi: 10.1007/s11356-016-6302-4. Epub 2016 Mar 2.


The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Huntemann M, Ivanova NN, Mavromatis K, Tripp HJ, Paez-Espino D, Tennessen K, Palaniappan K, Szeto E, Pillay M, Chen IM, Pati A, Nielsen T, Markowitz VM, Kyrpides NC.

Stand Genomic Sci. 2016 Feb 24;11:17. doi: 10.1186/s40793-016-0138-x. eCollection 2016.


Tongue-lip adhesion in Pierre Robin sequence.

Krishna Kumar KS, Vylopilli S, Sivadasan A, Pati AK, Narayanan S, Nair SM.

J Korean Assoc Oral Maxillofac Surg. 2016 Feb;42(1):47-50. doi: 10.5125/jkaoms.2016.42.1.47. Epub 2016 Feb 15.


Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, Rubin EM, Woyke T, Kyrpides NC, Ivanova NN.

Nat Commun. 2016 Jan 27;7:10476. doi: 10.1038/ncomms10476.


Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.

Bendall ML, Stevens SL, Chan LK, Malfatti S, Schwientek P, Tremblay J, Schackwitz W, Martin J, Pati A, Bushnell B, Froula J, Kang D, Tringe SG, Bertilsson S, Moran MA, Shade A, Newton RJ, McMahon KD, Malmstrom RR.

ISME J. 2016 Jul;10(7):1589-601. doi: 10.1038/ismej.2015.241. Epub 2016 Jan 8.


High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.

Ardley J, Tian R, O'Hara G, Seshadri R, Reddy TB, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Howieson J, Reeve W.

Stand Genomic Sci. 2015 Dec 10;10:126. doi: 10.1186/s40793-015-0119-5. eCollection 2015.


Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Tiwari R, Howieson J, Yates R, Tian R, Held B, Tapia R, Han C, Seshadri R, Reddy TB, Huntemann M, Pati A, Woyke T, Markowitz V, Ivanova N, Kyrpides N, Reeve W.

Stand Genomic Sci. 2015 Nov 30;10:113. doi: 10.1186/s40793-015-0115-9. eCollection 2015.

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