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Items: 1 to 50 of 247

1.

Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries.

Hong N, Wen A, Stone DJ, Tsuji S, Kingsbury PR, Rasmussen LV, Pacheco JA, Adekkanattu P, Wang F, Luo Y, Pathak J, Liu H, Jiang G.

J Biomed Inform. 2019 Oct 14;99:103310. doi: 10.1016/j.jbi.2019.103310. [Epub ahead of print]

PMID:
31622801
2.

Fabrication and characterization of strontium-hydroxyapatite/silk fibroin biocomposite nanospheres for bone-tissue engineering applications.

Wang L, Pathak JL, Liang D, Zhong N, Guan H, Wan M, Miao G, Li Z, Ge L.

Int J Biol Macromol. 2019 Oct 5. pii: S0141-8130(19)35789-7. doi: 10.1016/j.ijbiomac.2019.09.107. [Epub ahead of print]

PMID:
31593715
3.

Using Electronic Health Records and Machine Learning to Predict Postpartum Depression.

Wang S, Pathak J, Zhang Y.

Stud Health Technol Inform. 2019 Aug 21;264:888-892. doi: 10.3233/SHTI190351.

PMID:
31438052
4.

Stratified Mortality Prediction of Patients with Acute Kidney Injury in Critical Care.

Xu Z, Luo Y, Adekkanattu P, Ancker JS, Jiang G, Kiefer RC, Pacheco JA, Rasmussen LV, Pathak J, Wang F.

Stud Health Technol Inform. 2019 Aug 21;264:462-466. doi: 10.3233/SHTI190264.

PMID:
31437966
5.

Three years of follow-up of otodental syndrome in 3-year-old Chinese boy: a rare case report.

Su JM, Zeng SJ, Ye XW, Wu ZF, Huang XW, Pathak JL.

BMC Oral Health. 2019 Jul 25;19(1):164. doi: 10.1186/s12903-019-0860-z.

6.

Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.

Sholle ET, Pinheiro LC, Adekkanattu P, Davila MA, Johnson SB, Pathak J, Sinha S, Li C, Lubansky SA, Safford MM, Campion TR.

J Am Med Inform Assoc. 2019 Aug 1;26(8-9):722-729. doi: 10.1093/jamia/ocz040.

PMID:
31329882
7.

Social determinants of health in mental health care and research: a case for greater inclusion.

Deferio JJ, Breitinger S, Khullar D, Sheth A, Pathak J.

J Am Med Inform Assoc. 2019 Aug 1;26(8-9):895-899. doi: 10.1093/jamia/ocz049.

PMID:
31329877
8.

Predictive Modeling of the Risk of Acute Kidney Injury in Critical Care: A Systematic Investigation of The Class Imbalance Problem.

Xu Z, Feng Y, Li Y, Srivastava A, Adekkanattu P, Ancker JS, Jiang G, Kiefer RC, Lee K, Pacheco JA, Rasmussen LV, Pathak J, Luo Y, Wang F.

AMIA Jt Summits Transl Sci Proc. 2019 May 6;2019:809-818. eCollection 2019.

9.

A Trans-Ethnic Genome-Wide Association Study of Uterine Fibroids.

Edwards TL, Giri A, Hellwege JN, Hartmann KE, Stewart EA, Jeff JM, Bray MJ, Pendergrass SA, Torstenson ES, Keaton JM, Jones SH, Gogoi RP, Kuivaniemi H, Jackson KL, Kho AN, Kullo IJ, McCarty CA, Im HK, Pacheco JA, Pathak J, Williams MS, Tromp G, Kenny EE, Peissig PL, Denny JC, Roden DM, Velez Edwards DR.

Front Genet. 2019 Jun 12;10:511. doi: 10.3389/fgene.2019.00511. eCollection 2019.

10.

A dual functional bone-defect-filling material with sequential antibacterial and osteoinductive properties for infected bone defect repair.

Wang D, Liu Y, Liu Y, Yan L, Zaat SAJ, Wismeijer D, Pathak JL, Wu G.

J Biomed Mater Res A. 2019 Oct;107(10):2360-2370. doi: 10.1002/jbm.a.36744. Epub 2019 Jun 17.

PMID:
31173657
11.

Plasma membrane localization of CYP4Z1 and CYP19A1 and the detection of anti-CYP19A1 autoantibodies in humans.

Khayeka-Wandabwa C, Ma X, Cao X, Nunna V, Pathak JL, Bernhardt R, Cai P, Bureik M.

Int Immunopharmacol. 2019 Aug;73:64-71. doi: 10.1016/j.intimp.2019.05.003. Epub 2019 May 10.

PMID:
31082724
12.

Developing a portable natural language processing based phenotyping system.

Sharma H, Mao C, Zhang Y, Vatani H, Yao L, Zhong Y, Rasmussen L, Jiang G, Pathak J, Luo Y.

BMC Med Inform Decis Mak. 2019 Apr 4;19(Suppl 3):78. doi: 10.1186/s12911-019-0786-z.

13.

Pro-inflammatory Cytokines and Osteocytes.

Zhou M, Li S, Pathak JL.

Curr Osteoporos Rep. 2019 Jun;17(3):97-104. doi: 10.1007/s11914-019-00507-z. Review.

PMID:
30915637
14.

Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.

Adekkanattu P, Sholle ET, DeFerio J, Pathak J, Johnson SB, Campion TR Jr.

AMIA Annu Symp Proc. 2018 Dec 5;2018:147-156. eCollection 2018.

15.

Mucoscopy of a Venous Lake.

Jha AK, Pathak J.

Dermatol Pract Concept. 2019 Jan 31;9(1):20-21. doi: 10.5826/dpc.0901a05. eCollection 2019 Jan. No abstract available.

16.

Using electronic health records to characterize prescription patterns: focus on antidepressants in nonpsychiatric outpatient settings.

Deferio JJ, Levin TT, Cukor J, Banerjee S, Abdulrahman R, Sheth A, Mehta N, Pathak J.

JAMIA Open. 2018 Oct;1(2):233-245. doi: 10.1093/jamiaopen/ooy037. Epub 2018 Sep 24.

17.

Association networks in a matched case-control design - Co-occurrence patterns of preexisting chronic medical conditions in patients with major depression versus their matched controls.

Kim MH, Banerjee S, Zhao Y, Wang F, Zhang Y, Zhu Y, DeFerio J, Evans L, Park SM, Pathak J.

J Biomed Inform. 2018 Nov;87:88-95. doi: 10.1016/j.jbi.2018.09.016. Epub 2018 Oct 6.

PMID:
30300713
18.

Differential Regulation of Adhesion and Phagocytosis of Resting and Activated Microglia by Dopamine.

Fan Y, Chen Z, Pathak JL, Carneiro AMD, Chung CY.

Front Cell Neurosci. 2018 Sep 11;12:309. doi: 10.3389/fncel.2018.00309. eCollection 2018.

19.

The Role of Next-Generation Sequencing in Precision Medicine: A Review of Outcomes in Oncology.

Morash M, Mitchell H, Beltran H, Elemento O, Pathak J.

J Pers Med. 2018 Sep 17;8(3). pii: E30. doi: 10.3390/jpm8030030. Review.

20.

Sustained Release of Zoledronic Acid from Mesoporous TiO₂-Layered Implant Enhances Implant Osseointegration in Osteoporotic Condition.

Liu J, Pathak JL, Hu X, Jin Y, Wu Z, Al-Baadani MA, Wu S, Zhang H, Farkasdi S, Liu Y, Ma J, Wu G.

J Biomed Nanotechnol. 2018 Nov 1;14(11):1965-1978. doi: 10.1166/jbn.2018.2635.

PMID:
30165932
21.

All-trans retinoic-acid inhibits heterodimeric bone morphogenetic protein 2/7-stimulated osteoclastogenesis, and resorption activity.

Bi W, Liu Y, Guo J, Lin Z, Liu J, Zhou M, Wismeijer D, Pathak JL, Wu G.

Cell Biosci. 2018 Aug 23;8:48. doi: 10.1186/s13578-018-0246-y. eCollection 2018.

22.

A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments.

Pacheco JA, Rasmussen LV, Kiefer RC, Campion TR, Speltz P, Carroll RJ, Stallings SC, Mo H, Ahuja M, Jiang G, LaRose ER, Peissig PL, Shang N, Benoit B, Gainer VS, Borthwick K, Jackson KL, Sharma A, Wu AY, Kho AN, Roden DM, Pathak J, Denny JC, Thompson WK.

J Am Med Inform Assoc. 2018 Nov 1;25(11):1540-1546. doi: 10.1093/jamia/ocy101.

23.

Risk Factors for Depression Among Civilians After the 9/11 World Trade Center Terrorist Attacks: A Systematic Review and Meta-Analysis.

Chatterjee A, Banerjee S, Stein C, Kim MH, DeFerio J, Pathak J.

PLoS Curr. 2018 Mar 30;10. pii: ecurrents.dis.6a00b40c8ace0a6a0017361d7577c50a. doi: 10.1371/currents.dis.6a00b40c8ace0a6a0017361d7577c50a.

24.

Inhibition of JAK2/STAT3 signaling suppresses bone marrow stromal cells proliferation and osteogenic differentiation, and impairs bone defect healing.

Yu X, Li Z, Wan Q, Cheng X, Zhang J, Pathak JL, Li Z.

Biol Chem. 2018 Oct 25;399(11):1313-1323. doi: 10.1515/hsz-2018-0253.

PMID:
30044759
25.

A case report of hemolytic streptococcal gangrene in the danger triangle of the face with thrombocytopenia and hepatitis.

Jia XL, Pathak JL, Tong JF, Su JM.

BMC Pediatr. 2018 Jun 22;18(1):198. doi: 10.1186/s12887-018-1177-9.

26.

CoCl2 , a mimic of hypoxia, enhances bone marrow mesenchymal stem cells migration and osteogenic differentiation via STAT3 signaling pathway.

Yu X, Wan Q, Cheng G, Cheng X, Zhang J, Pathak JL, Li Z.

Cell Biol Int. 2018 Sep;42(10):1321-1329. doi: 10.1002/cbin.11017. Epub 2018 Jul 2.

PMID:
29908007
27.

CATCH-KB: Establishing a Pharmacogenomics Variant Repository for Chemotherapy-Induced Cardiotoxicity.

Morash M, Mitchell H, Yu A, Campion T, Beltran H, Elemento O, Pathak J.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:168-177. eCollection 2018.

28.

From Sour Grapes to Low-Hanging Fruit: A Case Study Demonstrating a Practical Strategy for Natural Language Processing Portability.

Johnson SB, Adekkanattu P, Campion TR Jr, Flory J, Pathak J, Patterson OV, DuVall SL, Major V, Aphinyanaphongs Y.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:104-112. eCollection 2018.

29.

The potential value of social determinants of health in predicting health outcomes.

Ancker JS, Kim MH, Zhang Y, Zhang Y, Pathak J.

J Am Med Inform Assoc. 2018 Aug 1;25(8):1109-1110. doi: 10.1093/jamia/ocy061. No abstract available.

PMID:
29878223
30.

Bisphenol A (BPA) the mighty and the mutagenic.

Jalal N, Surendranath AR, Pathak JL, Yu S, Chung CY.

Toxicol Rep. 2017 Dec 16;5:76-84. doi: 10.1016/j.toxrep.2017.12.013. eCollection 2018. Review.

31.

Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.

Sholle ET, Kabariti J, Johnson SB, Leonard JP, Pathak J, Varughese VI, Cole CL, Campion TR Jr.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1581-1588. eCollection 2017.

32.

A Framework for Data Quality Assessment in Clinical Research Datasets.

Lee K, Weiskopf N, Pathak J.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1080-1089. eCollection 2017.

33.

Flight duration and flight muscle ultrastructure of unfed hawk moths.

Wone BWM, Pathak J, Davidowitz G.

Arthropod Struct Dev. 2018 Sep;47(5):457-464. doi: 10.1016/j.asd.2018.05.003. Epub 2018 Jun 13.

PMID:
29782921
34.

Semi-Supervised Approach to Monitoring Clinical Depressive Symptoms in Social Media.

Yazdavar AH, Al-Olimat HS, Ebrahimi M, Bajaj G, Banerjee T, Thirunarayan K, Pathak J, Sheth A.

Proc IEEE ACM Int Conf Adv Soc Netw Anal Min. 2017 Jul-Aug;2017:1191-1198. doi: 10.1145/3110025.3123028. Epub 2017 Jul 31.

35.

Traditional Chinese medicine formula Bi-Qi capsule alleviates rheumatoid arthritis-induced inflammation, synovial hyperplasia, and cartilage destruction in rats.

Wang K, Zhang D, Liu Y, Wang X, Zhao J, Sun T, Jin T, Li B, Pathak JL.

Arthritis Res Ther. 2018 Mar 14;20(1):43. doi: 10.1186/s13075-018-1547-6.

36.

BROWN TUMOR OF THE PALATE.

Pal R, Bhadada SK, Pathak J, Sharma LR, Bhansali A.

Endocr Pract. 2018 Jun;24(6):605. doi: 10.4158/EP-2017-0225. Epub 2018 Mar 2. No abstract available.

PMID:
29498916
37.
38.

Model-Free Prediction of Large Spatiotemporally Chaotic Systems from Data: A Reservoir Computing Approach.

Pathak J, Hunt B, Girvan M, Lu Z, Ott E.

Phys Rev Lett. 2018 Jan 12;120(2):024102. doi: 10.1103/PhysRevLett.120.024102.

PMID:
29376715
39.

Drug knowledge bases and their applications in biomedical informatics research.

Zhu Y, Elemento O, Pathak J, Wang F.

Brief Bioinform. 2019 Jul 19;20(4):1308-1321. doi: 10.1093/bib/bbx169.

PMID:
29304188
40.

Using machine learning to replicate chaotic attractors and calculate Lyapunov exponents from data.

Pathak J, Lu Z, Hunt BR, Girvan M, Ott E.

Chaos. 2017 Dec;27(12):121102. doi: 10.1063/1.5010300.

PMID:
29289043
41.

Composition and functional property of photosynthetic pigments under circadian rhythm in the cyanobacterium Spirulina platensis.

Kumar D, Kannaujiya VK, Richa, Pathak J, Sundaram S, Sinha RP.

Protoplasma. 2018 May;255(3):885-898. doi: 10.1007/s00709-017-1195-8. Epub 2017 Dec 19.

PMID:
29255959
42.

Complex coacervation in charge complementary biopolymers: Electrostatic versus surface patch binding.

Pathak J, Priyadarshini E, Rawat K, Bohidar HB.

Adv Colloid Interface Sci. 2017 Dec;250:40-53. doi: 10.1016/j.cis.2017.10.006. Epub 2017 Nov 3. Review.

PMID:
29128042
43.

Ayurveda formulations: A roadmap to address the safety concerns.

Patwardhan K, Pathak J, Acharya R.

J Ayurveda Integr Med. 2017 Oct - Dec;8(4):279-282. doi: 10.1016/j.jaim.2017.08.010. Epub 2017 Nov 7.

44.

Electronic Health Record Phenotypes for Precision Medicine: Perspectives and Caveats From Treatment of Breast Cancer at a Single Institution.

Breitenstein MK, Liu H, Maxwell KN, Pathak J, Zhang R.

Clin Transl Sci. 2018 Jan;11(1):85-92. doi: 10.1111/cts.12514.

45.

Constructing an Anisotropic Triple-Pass Tubular Framework within a Lyophilized Porous Gelatin Scaffold Using Dexamethasone-Loaded Functionalized Whatman Paper To Reinforce Its Mechanical Strength and Promote Osteogenesis.

Ran J, Zeng H, Pathak JL, Jiang P, Bai Y, Yan P, Sun G, Shen X, Tong H, Shi B.

Biomacromolecules. 2017 Nov 13;18(11):3788-3801. doi: 10.1021/acs.biomac.7b00673. Epub 2017 Oct 16.

PMID:
28992406
46.

Insights of Lr28 mediated wheat leaf rust resistance: Transcriptomic approach.

Singh D, Kumar D, Satapathy L, Pathak J, Chandra S, Riaz A, Bhaganagre G, Dhariwal R, Kumar M, Prabhu KV, Balyan HS, Gupta PK, Mukhopadhyay K.

Gene. 2017 Dec 30;637:72-89. doi: 10.1016/j.gene.2017.09.028. Epub 2017 Sep 18.

PMID:
28935260
47.

Prototype Development: Context-Driven Dynamic XML Ophthalmologic Data Capture Application.

Peissig P, Schwei KM, Kadolph C, Finamore J, Cancel E, McCarty CA, Okorie A, Thomas KL, Allen Pacheco J, Pathak J, Ellis SB, Denny JC, Rasmussen LV, Tromp G, Williams MS, Vrabec TR, Brilliant MH.

JMIR Med Inform. 2017 Sep 13;5(3):e27. doi: 10.2196/medinform.7465.

48.

D2Refine: A Platform for Clinical Research Study Data Element Harmonization and Standardization.

Sharma DK, Solbrig HR, Prud'hommeaux E, Lee K, Pathak J, Jiang G.

AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:259-267. eCollection 2017.

49.

Coarse-Grained Modeling of Antibodies from Small-Angle Scattering Profiles.

Corbett D, Hebditch M, Keeling R, Ke P, Ekizoglou S, Sarangapani P, Pathak J, Van Der Walle CF, Uddin S, Baldock C, Avendaño C, Curtis RA.

J Phys Chem B. 2017 Sep 7;121(35):8276-8290. doi: 10.1021/acs.jpcb.7b04621. Epub 2017 Aug 25.

PMID:
28796519
50.

Comparison of cytochrome P450 expression in four different human osteoblast models.

Liu L, Pathak JL, Zhu YQ, Bureik M.

Biol Chem. 2017 Nov 27;398(12):1327-1334. doi: 10.1515/hsz-2017-0205.

PMID:
28779563

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