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Items: 1 to 50 of 62

1.

The Culture Environment Influences Both Gene Regulation and Phenotypic Heterogeneity in Escherichia coli.

Smith A, Kaczmar A, Bamford RA, Smith C, Frustaci S, Kovacs-Simon A, O'Neill P, Moore K, Paszkiewicz K, Titball RW, Pagliara S.

Front Microbiol. 2018 Aug 15;9:1739. doi: 10.3389/fmicb.2018.01739. eCollection 2018.

2.

Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.

Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA.

Open Biol. 2018 Jan;8(1). pii: 170184. doi: 10.1098/rsob.170184.

3.

Genome-wide chromatin mapping with size resolution reveals a dynamic sub-nucleosomal landscape in Arabidopsis.

Pass DA, Sornay E, Marchbank A, Crawford MR, Paszkiewicz K, Kent NA, Murray JAH.

PLoS Genet. 2017 Sep 13;13(9):e1006988. doi: 10.1371/journal.pgen.1006988. eCollection 2017 Sep.

4.

Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality.

Dunthorn M, Zufall RA, Chi J, Paszkiewicz K, Moore K, Mahé F.

Genome Biol Evol. 2017 Jun 1;9(6):1781-1787. doi: 10.1093/gbe/evx125.

5.

Molecular epidemiology of Pseudomonas aeruginosa in an unsegregated bronchiectasis cohort sharing hospital facilities with a cystic fibrosis cohort.

Mitchelmore PJ, Randall J, Bull MJ, Moore KA, O'Neill PA, Paszkiewicz K, Mahenthiralingam E, Scotton CJ, Sheldon CD, Withers NJ, Brown AR.

Thorax. 2017 Aug 26. pii: thoraxjnl-2016-209889. doi: 10.1136/thoraxjnl-2016-209889. [Epub ahead of print]

PMID:
28844058
6.

Decay of the glycolytic pathway and adaptation to intranuclear parasitism within Enterocytozoonidae microsporidia.

Wiredu Boakye D, Jaroenlak P, Prachumwat A, Williams TA, Bateman KS, Itsathitphaisarn O, Sritunyalucksana K, Paszkiewicz KH, Moore KA, Stentiford GD, Williams BAP.

Environ Microbiol. 2017 May;19(5):2077-2089. doi: 10.1111/1462-2920.13734. Epub 2017 Apr 12.

PMID:
28345194
7.

A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater.

Flaviani F, Schroeder DC, Balestreri C, Schroeder JL, Moore K, Paszkiewicz K, Pfaff MC, Rybicki EP.

Viruses. 2017 Mar 17;9(3). pii: E47. doi: 10.3390/v9030047.

8.

A Noise Trimming and Positional Significance of Transposon Insertion System to Identify Essential Genes in Yersinia pestis.

Yang ZR, Bullifent HL, Moore K, Paszkiewicz K, Saint RJ, Southern SJ, Champion OL, Senior NJ, Sarkar-Tyson M, Oyston PC, Atkins TP, Titball RW.

Sci Rep. 2017 Feb 6;7:41923. doi: 10.1038/srep41923.

9.

Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorum in soil.

Shaw S, Le Cocq K, Paszkiewicz K, Moore K, Winsbury R, de Torres Zabala M, Studholme DJ, Salmon D, Thornton CR, Grant MR.

Mol Plant Pathol. 2016 Dec;17(9):1425-1441. doi: 10.1111/mpp.12429. Epub 2016 Jul 24.

PMID:
27187266
10.

Pitfalls of haplotype phasing from amplicon-based long-read sequencing.

Laver TW, Caswell RC, Moore KA, Poschmann J, Johnson MB, Owens MM, Ellard S, Paszkiewicz KH, Weedon MN.

Sci Rep. 2016 Feb 17;6:21746. doi: 10.1038/srep21746.

11.

Assessing the performance of the Oxford Nanopore Technologies MinION.

Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ.

Biomol Detect Quantif. 2015 Mar;3:1-8.

12.

Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation.

Gal C, Murton HE, Subramanian L, Whale AJ, Moore KM, Paszkiewicz K, Codlin S, Bähler J, Creamer KM, Partridge JF, Allshire RC, Kent NA, Whitehall SK.

EMBO Rep. 2016 Jan;17(1):79-93. doi: 10.15252/embr.201540476. Epub 2015 Nov 18.

13.

Increase in bacteraemia cases in the East Midlands region of the UK due to MDR Escherichia coli ST73: high levels of genomic and plasmid diversity in causative isolates.

Alhashash F, Wang X, Paszkiewicz K, Diggle M, Zong Z, McNally A.

J Antimicrob Chemother. 2016 Feb;71(2):339-43. doi: 10.1093/jac/dkv365. Epub 2015 Oct 30.

PMID:
26518049
14.

The molecular characterisation of Escherichia coli K1 isolated from neonatal nasogastric feeding tubes.

Alkeskas A, Ogrodzki P, Saad M, Masood N, Rhoma NR, Moore K, Farbos A, Paszkiewicz K, Forsythe S.

BMC Infect Dis. 2015 Oct 26;15:449. doi: 10.1186/s12879-015-1210-7.

15.

Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni.

Baig A, McNally A, Dunn S, Paszkiewicz KH, Corander J, Manning G.

BMC Genomics. 2015 Oct 24;16:852. doi: 10.1186/s12864-015-2087-y.

16.

Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit.

Masood N, Moore K, Farbos A, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

BMC Genomics. 2015 Oct 5;16:750. doi: 10.1186/s12864-015-1961-y.

17.

Anaerobic choline metabolism in microcompartments promotes growth and swarming of Proteus mirabilis.

Jameson E, Fu T, Brown IR, Paszkiewicz K, Purdy KJ, Frank S, Chen Y.

Environ Microbiol. 2016 Sep;18(9):2886-98. doi: 10.1111/1462-2920.13059. Epub 2015 Nov 3.

18.

A de novo Assembly of the Common Frog (Rana temporaria) Transcriptome and Comparison of Transcription Following Exposure to Ranavirus and Batrachochytrium dendrobatidis.

Price SJ, Garner TW, Balloux F, Ruis C, Paszkiewicz KH, Moore K, Griffiths AG.

PLoS One. 2015 Jun 25;10(6):e0130500. doi: 10.1371/journal.pone.0130500. eCollection 2015.

19.

Transcriptional landscape of trans-kingdom communication between Candida albicans and Streptococcus gordonii.

Dutton LC, Paszkiewicz KH, Silverman RJ, Splatt PR, Shaw S, Nobbs AH, Lamont RJ, Jenkinson HF, Ramsdale M.

Mol Oral Microbiol. 2016 Apr;31(2):136-61. doi: 10.1111/omi.12111. Epub 2015 Jul 7.

20.

The cost of phage resistance in a plant pathogenic bacterium is context-dependent.

Meaden S, Paszkiewicz K, Koskella B.

Evolution. 2015 May;69(5):1321-8. doi: 10.1111/evo.12652. Epub 2015 Apr 27.

21.

Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex.

Morley L, McNally A, Paszkiewicz K, Corander J, Méric G, Sheppard SK, Blom J, Manning G.

Appl Environ Microbiol. 2015 Jun;81(11):3641-7. doi: 10.1128/AEM.00546-15. Epub 2015 Mar 20.

22.

The impact of the HIRA histone chaperone upon global nucleosome architecture.

Gal C, Moore KM, Paszkiewicz K, Kent NA, Whitehall SK.

Cell Cycle. 2015;14(1):123-34. doi: 10.4161/15384101.2014.967123.

23.

Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection.

Darch SE, McNally A, Harrison F, Corander J, Barr HL, Paszkiewicz K, Holden S, Fogarty A, Crusz SA, Diggle SP.

Sci Rep. 2015 Jan 12;5:7649. doi: 10.1038/srep07649.

24.

Maternal temperature history activates Flowering Locus T in fruits to control progeny dormancy according to time of year.

Chen M, MacGregor DR, Dave A, Florance H, Moore K, Paszkiewicz K, Smirnoff N, Graham IA, Penfield S.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18787-92. doi: 10.1073/pnas.1412274111. Epub 2014 Dec 16.

25.

Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors.

Wasukira A, Coulter M, Al-Sowayeh N, Thwaites R, Paszkiewicz K, Kubiriba J, Smith J, Grant M, Studholme DJ.

Pathogens. 2014 Mar 18;3(1):211-37. doi: 10.3390/pathogens3010211.

26.

Seed production temperature regulation of primary dormancy occurs through control of seed coat phenylpropanoid metabolism.

MacGregor DR, Kendall SL, Florance H, Fedi F, Moore K, Paszkiewicz K, Smirnoff N, Penfield S.

New Phytol. 2015 Jan;205(2):642-52. doi: 10.1111/nph.13090. Epub 2014 Nov 20.

27.

Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3.

Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V.

Genome Announc. 2014 Jul 3;2(4). pii: e00654-14. doi: 10.1128/genomeA.00654-14.

28.

Role of Candida albicans Tem1 in mitotic exit and cytokinesis.

Milne SW, Cheetham J, Lloyd D, Shaw S, Moore K, Paszkiewicz KH, Aves SJ, Bates S.

Fungal Genet Biol. 2014 Aug;69:84-95. doi: 10.1016/j.fgb.2014.06.007. Epub 2014 Jun 25.

PMID:
24973462
29.

Draft Genome Sequence of "Candidatus Cronobacter colletis" NCTC 14934T, a New Species in the Genus Cronobacter.

Masood N, Jackson E, Moore K, Farbos A, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

Genome Announc. 2014 Jun 19;2(3). pii: e00585-14. doi: 10.1128/genomeA.00585-14.

30.

Quality control on the frontier.

Paszkiewicz KH, Farbos A, O'Neill P, Moore K.

Front Genet. 2014 May 27;5:157. doi: 10.3389/fgene.2014.00157. eCollection 2014. Review.

31.

Draft Genome Sequence of Stenotrophomonas maltophilia SeITE02, a Gammaproteobacterium Isolated from Selenite-Contaminated Mining Soil.

Bertolini C, van Aerle R, Lampis S, Moore KA, Paszkiewicz K, Butler CS, Vallini G, van der Giezen M.

Genome Announc. 2014 May 8;2(3). pii: e00331-14. doi: 10.1128/genomeA.00331-14.

32.

Characterizing DNA preservation in degraded specimens of Amara alpina (Carabidae: Coleoptera).

Heintzman PD, Elias SA, Moore K, Paszkiewicz K, Barnes I.

Mol Ecol Resour. 2014 May;14(3):606-15. doi: 10.1111/1755-0998.12205. Epub 2013 Dec 30.

PMID:
24266987
33.

HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES1 is required for circadian periodicity through the promotion of nucleo-cytoplasmic mRNA export in Arabidopsis.

MacGregor DR, Gould P, Foreman J, Griffiths J, Bird S, Page R, Stewart K, Steel G, Young J, Paszkiewicz K, Millar AJ, Halliday KJ, Hall AJ, Penfield S.

Plant Cell. 2013 Nov;25(11):4391-404. doi: 10.1105/tpc.113.114959. Epub 2013 Nov 19.

34.

Draft Genome Sequence of a Meningitic Isolate of Cronobacter sakazakii Clonal Complex 4, Strain 8399.

Masood N, Moore K, Farbos A, Hariri S, Block C, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

Genome Announc. 2013 Oct 10;1(5). pii: e00833-13. doi: 10.1128/genomeA.00833-13.

35.

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.

Cock PJ, Grüning BA, Paszkiewicz K, Pritchard L.

PeerJ. 2013 Sep 17;1:e167. doi: 10.7717/peerj.167. eCollection 2013.

36.

Draft Genome Sequences of Three Newly Identified Species in the Genus Cronobacter, C. helveticus LMG23732T, C. pulveris LMG24059, and C. zurichensis LMG23730T.

Masood N, Moore K, Farbos A, Hariri S, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

Genome Announc. 2013 Sep 26;1(5). pii: e00783-13. doi: 10.1128/genomeA.00783-13.

37.

Draft Genome Sequence of the Earliest Cronobacter sakazakii Sequence Type 4 Strain, NCIMB 8272.

Masood N, Moore K, Farbos A, Hariri S, Paszkiewicz K, Dickins B, McNally A, Forsythe S.

Genome Announc. 2013 Sep 26;1(5). pii: e00782-13. doi: 10.1128/genomeA.00782-13.

38.

Salmonella Gallinarum field isolates from laying hens are related to the vaccine strain SG9R.

Van Immerseel F, Studholme DJ, Eeckhaut V, Heyndrickx M, Dewulf J, Dewaele I, Van Hoorebeke S, Haesebrouck F, Van Meirhaeghe H, Ducatelle R, Paszkiewicz K, Titball RW.

Vaccine. 2013 Oct 9;31(43):4940-5. doi: 10.1016/j.vaccine.2013.08.033. Epub 2013 Aug 27.

PMID:
23994381
39.

The genome of Spraguea lophii and the basis of host-microsporidian interactions.

Campbell SE, Williams TA, Yousuf A, Soanes DM, Paszkiewicz KH, Williams BA.

PLoS Genet. 2013;9(8):e1003676. doi: 10.1371/journal.pgen.1003676. Epub 2013 Aug 22.

40.

An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis.

Maruyama H, Harwood JC, Moore KM, Paszkiewicz K, Durley SC, Fukushima H, Atomi H, Takeyasu K, Kent NA.

EMBO Rep. 2013 Aug;14(8):711-7. doi: 10.1038/embor.2013.94. Epub 2013 Jul 9.

41.

Molecular mechanisms of toxicity of silver nanoparticles in zebrafish embryos.

van Aerle R, Lange A, Moorhouse A, Paszkiewicz K, Ball K, Johnston BD, de-Bastos E, Booth T, Tyler CR, Santos EM.

Environ Sci Technol. 2013 Jul 16;47(14):8005-14. doi: 10.1021/es401758d. Epub 2013 Jun 26.

42.

The stochastic silencing phenotype of Arabidopsis morc6 mutants reveals a role in efficient RNA-directed DNA methylation.

Brabbs TR, He Z, Hogg K, Kamenski A, Li Y, Paszkiewicz KH, Moore KA, O'Toole P, Graham IA, Jones L.

Plant J. 2013 Sep;75(5):836-46. doi: 10.1111/tpj.12246. Epub 2013 Jun 18.

43.

Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi.

Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V.

Genome Announc. 2013 May 9;1(3). pii: e00205-13. doi: 10.1128/genomeA.00205-13.

44.

Marine Rhodobacteraceae L-haloacid dehalogenase contains a novel His/Glu dyad that could activate the catalytic water.

Novak HR, Sayer C, Isupov MN, Paszkiewicz K, Gotz D, Spragg AM, Littlechild JA.

FEBS J. 2013 Apr;280(7):1664-80. doi: 10.1111/febs.12177. Epub 2013 Mar 8.

45.

SWI/SNF-like chromatin remodeling factor Fun30 supports point centromere function in S. cerevisiae.

Durand-Dubief M, Will WR, Petrini E, Theodorou D, Harris RR, Crawford MR, Paszkiewicz K, Krueger F, Correra RM, Vetter AT, Miller JR, Kent NA, Varga-Weisz P.

PLoS Genet. 2012 Sep;8(9):e1002974. doi: 10.1371/journal.pgen.1002974. Epub 2012 Sep 27.

46.

Draft genome sequence of Pseudomonas fuscovaginae, a broad-host-range pathogen of plants.

Patel HK, da Silva DP, Devescovi G, Maraite H, Paszkiewicz K, Studholme DJ, Venturi V.

J Bacteriol. 2012 May;194(10):2765-6. doi: 10.1128/JB.00341-12.

47.

Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae.

Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ.

PLoS Pathog. 2012 Feb;8(2):e1002514. doi: 10.1371/journal.ppat.1002514. Epub 2012 Feb 9.

48.

Genomic analysis uncovers a phenotypically diverse but genetically homogeneous Escherichia coli ST131 clone circulating in unrelated urinary tract infections.

Clark G, Paszkiewicz K, Hale J, Weston V, Constantinidou C, Penn C, Achtman M, McNally A.

J Antimicrob Chemother. 2012 Apr;67(4):868-77. doi: 10.1093/jac/dkr585. Epub 2012 Jan 18.

PMID:
22258927
49.

Correction: Studholme et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 clade. Genes 2011, 2, 1050-1065.

Studholme DJ, Wasukira A, Paszkiewicz K, Aritua V, Thwaites R, Smith J, Grant M.

Genes (Basel). 2012 Jan 11;3(1):88-9. doi: 10.3390/genes3010088.

50.

Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen xanthomonas campestris pathovar musacearum.

Wasukira A, Tayebwa J, Thwaites R, Paszkiewicz K, Aritua V, Kubiriba J, Smith J, Grant M, Studholme DJ.

Genes (Basel). 2012 Jul 4;3(3):361-77. doi: 10.3390/genes3030361.

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