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Association Between Nitrate-Reducing Oral Bacteria and Cardiometabolic Outcomes: Results From ORIGINS.

Goh CE, Trinh P, Colombo PC, Genkinger JM, Mathema B, Uhlemann AC, LeDuc C, Leibel R, Rosenbaum M, Paster BJ, Desvarieux M, Papapanou PN, Jacobs DR Jr, Demmer RT.

J Am Heart Assoc. 2019 Dec 3;8(23):e013324. doi: 10.1161/JAHA.119.013324. Epub 2019 Nov 26.


Aggregatibacter actinomycetemcomitans colonization and persistence in a primate model.

Velusamy SK, Sampathkumar V, Ramasubbu N, Paster BJ, Fine DH.

Proc Natl Acad Sci U S A. 2019 Oct 29;116(44):22307-22313. doi: 10.1073/pnas.1905238116. Epub 2019 Oct 14.


World Workshop on Oral Medicine VII: Targeting the oral microbiome Part 2: Current knowledge on malignant and potentially malignant oral disorders.

Robledo-Sierra J, Ben-Amy DP, Varoni E, Bavarian R, Simonsen JL, Paster BJ, Wade WG, Kerr R, Peterson DE, Frandsen Lau E.

Oral Dis. 2019 Jun;25 Suppl 1:28-48. doi: 10.1111/odi.13107. Review.


Effect of Silver Diamine Fluoride Treatment on Microbial Profiles of Plaque Biofilms from Root/Cervical Caries Lesions.

Mitwalli H, Mourao MDA, Dennison J, Yaman P, Paster BJ, Fontana M.

Caries Res. 2019;53(5):555-566. doi: 10.1159/000499578. Epub 2019 May 28.


Analysis of oral bacterial communities: comparison of HOMINGS with a tree-based approach implemented in QIIME.

Palmer RJ, Cotton SL, Kokaras AS, Gardner P, Grisius M, Pelayo E, Warner B, Paster BJ, Alevizos I.

J Oral Microbiol. 2019 Apr 1;11(1):1586413. doi: 10.1080/20002297.2019.1586413. eCollection 2019.


The oral microbiome of patients undergoing treatment for severe aplastic anemia: a pilot study.

Ames NJ, Barb JJ, Ranucci A, Kim H, Mudra SE, Cashion AK, Townsley DM, Childs R, Paster BJ, Faller LL, Wallen GR.

Ann Hematol. 2019 Jun;98(6):1351-1365. doi: 10.1007/s00277-019-03599-w. Epub 2019 Mar 27.


Caries-associated oral microbiome in head and neck cancer radiation patients: a longitudinal study.

Mougeot JC, Stevens CB, Almon KG, Paster BJ, Lalla RV, Brennan MT, Mougeot FB.

J Oral Microbiol. 2019 Mar 8;11(1):1586421. doi: 10.1080/20002297.2019.1586421. eCollection 2019.


Bayesian variable selection for multivariate zero-inflated models: Application to microbiome count data.

Lee KH, Coull BA, Moscicki AB, Paster BJ, Starr JR.

Biostatistics. 2018 Dec 26. doi: 10.1093/biostatistics/kxy067. [Epub ahead of print]


The Microbiomes of Pancreatic and Duodenum Tissue Overlap and Are Highly Subject Specific but Differ between Pancreatic Cancer and Noncancer Subjects.

Del Castillo E, Meier R, Chung M, Koestler DC, Chen T, Paster BJ, Charpentier KP, Kelsey KT, Izard J, Michaud DS.

Cancer Epidemiol Biomarkers Prev. 2019 Feb;28(2):370-383. doi: 10.1158/1055-9965.EPI-18-0542. Epub 2018 Oct 29.


Oral microbiota in youth with perinatally acquired HIV infection.

Starr JR, Huang Y, Lee KH, Murphy CM, Moscicki AB, Shiboski CH, Ryder MI, Yao TJ, Faller LL, Van Dyke RB, Paster BJ; Pediatric HIV/AIDS Cohort Study.

Microbiome. 2018 May 31;6(1):100. doi: 10.1186/s40168-018-0484-6.


Clinical and microbiological parameters of naturally occurring periodontitis in the non-human primate Macaca mulatta.

Colombo APV, Paster BJ, Grimaldi G, Lourenço TGB, Teva A, Campos-Neto A, McCluskey J, Kleanthous H, Van Dyke TE, Stashenko P.

J Oral Microbiol. 2017 Nov 25;9(1):1403843. doi: 10.1080/20002297.2017.1403843. eCollection 2017.


Impact of Oral Hygiene Discontinuation on Supragingival and Salivary Microbiomes.

Belstrøm D, Sembler-Møller ML, Grande MA, Kirkby N, Cotton SL, Paster BJ, Twetman S, Holmstrup P.

JDR Clin Trans Res. 2018 Jan;3(1):57-64. doi: 10.1177/2380084417723625. Epub 2017 Jul 31.


Microbiome at sites of gingival recession in children with Hutchinson-Gilford progeria syndrome.

Bassir SH, Chase I, Paster BJ, Gordon LB, Kleinman ME, Kieran MW, Kim DM, Sonis A.

J Periodontol. 2018 Jun;89(6):635-644. doi: 10.1002/JPER.17-0351.


Influence of periodontal treatment on subgingival and salivary microbiotas.

Belstrøm D, Grande MA, Sembler-Møller ML, Kirkby N, Cotton SL, Paster BJ, Holmstrup P.

J Periodontol. 2018 May;89(5):531-539. doi: 10.1002/JPER.17-0377. Epub 2018 Apr 23.


Microbial profile comparisons of saliva, pooled and site-specific subgingival samples in periodontitis patients.

Belstrøm D, Sembler-Møller ML, Grande MA, Kirkby N, Cotton SL, Paster BJ, Holmstrup P.

PLoS One. 2017 Aug 11;12(8):e0182992. doi: 10.1371/journal.pone.0182992. eCollection 2017.


The oral bacterial microbiome of occlusal surfaces in children and its association with diet and caries.

Ribeiro AA, Azcarate-Peril MA, Cadenas MB, Butz N, Paster BJ, Chen T, Bair E, Arnold RR.

PLoS One. 2017 Jul 5;12(7):e0180621. doi: 10.1371/journal.pone.0180621. eCollection 2017.


Ligature-associated bacterial profiles are linked to type 2 diabetes mellitus in a rat model and influenced by antibody treatment against TNF-α or RAGE.

Grauballe MB, Belstrøm D, Østergaard JA, Paster BJ, Schou S, Flyvbjerg A, Holmstrup P.

Clin Exp Dent Res. 2017 Feb;3(1):25-31. doi: 10.1002/cre2.54. Epub 2017 Feb 27.


Porphyromonas gingivalis is the most abundant species detected in coronary and femoral arteries.

Mougeot JC, Stevens CB, Paster BJ, Brennan MT, Lockhart PB, Mougeot FK.

J Oral Microbiol. 2017 Feb 8;9(1):1281562. doi: 10.1080/20002297.2017.1281562. eCollection 2017.


Salivary microbiota in individuals with different levels of caries experience.

Belstrøm D, Holmstrup P, Fiehn NE, Kirkby N, Kokaras A, Paster BJ, Bardow A.

J Oral Microbiol. 2017 Jan 23;9(1):1270614. doi: 10.1080/20002297.2016.1270614. eCollection 2017.


Novel urease-negative Helicobacter sp. 'H. enhydrae sp. nov.' isolated from inflamed gastric tissue of southern sea otters.

Shen Z, Batac F, Mannion A, Miller MA, Bakthavatchalu V, Ho C, Manning S, Paster BJ, Fox JG.

Dis Aquat Organ. 2017 Feb 8;123(1):1-11. doi: 10.3354/dao03082.


Salivary Gluten Degradation and Oral Microbial Profiles in Healthy Individuals and Celiac Disease Patients.

Tian N, Faller L, Leffler DA, Kelly CP, Hansen J, Bosch JA, Wei G, Paster BJ, Schuppan D, Helmerhorst EJ.

Appl Environ Microbiol. 2017 Mar 2;83(6). pii: e03330-16. doi: 10.1128/AEM.03330-16. Print 2017 Mar 15.


Salivary microbiota and caries occurrence in Mutans Streptococci-positive school children.

ElSalhy M, Söderling E, Honkala E, Fontana M, Flannagan S, Kokaras A, Paster BJ, Varghese A, Honkala S.

Eur J Paediatr Dent. 2016 Sep;17(3):188-192.


Novel Helicobacter species H.japonicum isolated from laboratory mice from Japan induces typhlocolitis and lower bowel carcinoma in C57BL/129 IL10-/- mice.

Shen Z, Feng Y, Muthupalani S, Sheh A, Cheaney LE, Kaufman CA, Gong G, Paster BJ, Fox JG.

Carcinogenesis. 2016 Dec;37(12):1190-1198. Epub 2016 Sep 21.


Resolvin E1 Reverses Experimental Periodontitis and Dysbiosis.

Lee CT, Teles R, Kantarci A, Chen T, McCafferty J, Starr JR, Brito LC, Paster BJ, Van Dyke TE.

J Immunol. 2016 Oct 1;197(7):2796-806. doi: 10.4049/jimmunol.1600859. Epub 2016 Aug 19.


Helicobacter saguini, a Novel Helicobacter Isolated from Cotton-Top Tamarins with Ulcerative Colitis, Has Proinflammatory Properties and Induces Typhlocolitis and Dysplasia in Gnotobiotic IL-10-/- Mice.

Shen Z, Mannion A, Whary MT, Muthupalani S, Sheh A, Feng Y, Gong G, Vandamme P, Holcombe HR, Paster BJ, Fox JG.

Infect Immun. 2016 Jul 21;84(8):2307-2316. doi: 10.1128/IAI.00235-16. Print 2016 Aug.


A practical guide to the oral microbiome and its relation to health and disease.

Krishnan K, Chen T, Paster BJ.

Oral Dis. 2017 Apr;23(3):276-286. doi: 10.1111/odi.12509. Epub 2016 Jul 4. Review.


First Cultivation of Health-Associated Tannerella sp. HOT-286 (BU063).

Vartoukian SR, Moazzez RV, Paster BJ, Dewhirst FE, Wade WG.

J Dent Res. 2016 Oct;95(11):1308-13. doi: 10.1177/0022034516651078. Epub 2016 May 18.


Concordance of HOMIM and HOMINGS technologies in the microbiome analysis of clinical samples.

Mougeot JL, Stevens CB, Cotton SL, Morton DS, Krishnan K, Brennan MT, Lockhart PB, Paster BJ, Bahrani Mougeot FK.

J Oral Microbiol. 2016 Apr 8;8:30379. doi: 10.3402/jom.v8.30379. eCollection 2016.


Host-Microbiome Cross-talk in Oral Mucositis.

Vasconcelos RM, Sanfilippo N, Paster BJ, Kerr AR, Li Y, Ramalho L, Queiroz EL, Smith B, Sonis ST, Corby PM.

J Dent Res. 2016 Jul;95(7):725-33. doi: 10.1177/0022034516641890. Epub 2016 Apr 6. Review.


Helicobacter bilis and Helicobacter trogontum: infectious causes of abortion in sheep.

Gill J, Haydon TG, Rawdon TG, McFadden AM, Ha HJ, Shen Z, Feng Y, Pang J, Swennes AG, Paster BJ, Dewhirst FE, Fox JG, Spence RP.

J Vet Diagn Invest. 2016 May;28(3):225-34. doi: 10.1177/1040638716638704. Epub 2016 Mar 26.


Comparative analysis of bacterial profiles in unstimulated and stimulated saliva samples.

Belstrøm D, Holmstrup P, Bardow A, Kokaras A, Fiehn NE, Paster BJ.

J Oral Microbiol. 2016 Mar 16;8:30112. doi: 10.3402/jom.v8.30112. eCollection 2016.


Bacterial composition in whole saliva from patients with severe hyposalivation--a case-control study.

Belstrøm D, Holmstrup P, Fiehn NE, Rosing K, Bardow A, Paster BJ, Lynge Pedersen AM.

Oral Dis. 2016 May;22(4):330-7. doi: 10.1111/odi.12452. Epub 2016 Feb 26.


Temporal Stability of the Salivary Microbiota in Oral Health.

Belstrøm D, Holmstrup P, Bardow A, Kokaras A, Fiehn NE, Paster BJ.

PLoS One. 2016 Jan 22;11(1):e0147472. doi: 10.1371/journal.pone.0147472. eCollection 2016.


Salivary bacterial fingerprints of established oral disease revealed by the Human Oral Microbe Identification using Next Generation Sequencing (HOMINGS) technique.

Belstrøm D, Paster BJ, Fiehn NE, Bardow A, Holmstrup P.

J Oral Microbiol. 2016 Jan 14;8:30170. doi: 10.3402/jom.v8.30170. eCollection 2016.


Microbial Diversity in the Early In Vivo-Formed Dental Biofilm.

Heller D, Helmerhorst EJ, Gower AC, Siqueira WL, Paster BJ, Oppenheim FG.

Appl Environ Microbiol. 2016 Jan 8;82(6):1881-8. doi: 10.1128/AEM.03984-15.


Microbiomes of Endodontic-Periodontal Lesions before and after Chemomechanical Preparation.

Gomes BP, Berber VB, Kokaras AS, Chen T, Paster BJ.

J Endod. 2015 Dec;41(12):1975-84. doi: 10.1016/j.joen.2015.08.022. Epub 2015 Oct 29.


Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus).

Shen Z, Feng Y, Sheh A, Everitt J, Bertram F, Paster BJ, Fox JG.

J Med Microbiol. 2015 Sep;64(9):1063-73. doi: 10.1099/jmm.0.000113. Epub 2015 Jun 30.


TLR4, NOD1 and NOD2 mediate immune recognition of putative newly identified periodontal pathogens.

Marchesan J, Jiao Y, Schaff RA, Hao J, Morelli T, Kinney JS, Gerow E, Sheridan R, Rodrigues V, Paster BJ, Inohara N, Giannobile WV.

Mol Oral Microbiol. 2016 Jun;31(3):243-258. doi: 10.1111/omi.12116. Epub 2015 Sep 10.


Differentiation of salivary bacterial profiles of subjects with periodontitis and dental caries.

Belstrøm D, Fiehn NE, Nielsen CH, Klepac-Ceraj V, Paster BJ, Twetman S, Holmstrup P.

J Oral Microbiol. 2015 Apr 7;7:27429. doi: 10.3402/jom.v7.27429. eCollection 2015.


Beta-diversity metrics of the upper digestive tract microbiome are associated with body mass index.

Lin SW, Freedman ND, Shi J, Gail MH, Vogtmann E, Yu G, Klepac-Ceraj V, Paster BJ, Dye BA, Wang GQ, Wei WQ, Fan JH, Qiao YL, Dawsey SM, Abnet CC.

Obesity (Silver Spring). 2015 Apr;23(4):862-9. doi: 10.1002/oby.21020. Epub 2015 Mar 9.


Subgingival microbial communities in Leukocyte Adhesion Deficiency and their relationship with local immunopathology.

Moutsopoulos NM, Chalmers NI, Barb JJ, Abusleme L, Greenwell-Wild T, Dutzan N, Paster BJ, Munson PJ, Fine DH, Uzel G, Holland SM.

PLoS Pathog. 2015 Mar 5;11(3):e1004698. doi: 10.1371/journal.ppat.1004698. eCollection 2015 Mar. Erratum in: PLoS Pathog. 2015 Apr;11(4):e1004860.


Association between tobacco use and the upper gastrointestinal microbiome among Chinese men.

Vogtmann E, Flores R, Yu G, Freedman ND, Shi J, Gail MH, Dye BA, Wang GQ, Klepac-Ceraj V, Paster BJ, Wei WQ, Guo HQ, Dawsey SM, Qiao YL, Abnet CC.

Cancer Causes Control. 2015 Apr;26(4):581-8. doi: 10.1007/s10552-015-0535-2. Epub 2015 Feb 21.


The hidden 'mycobacteriome' of the human healthy oral cavity and upper respiratory tract.

Macovei L, McCafferty J, Chen T, Teles F, Hasturk H, Paster BJ, Campos-Neto A.

J Oral Microbiol. 2015 Feb 13;7:26094. doi: 10.3402/jom.v7.26094. eCollection 2015.


Subgingival microbial profiles of Sudanese patients with aggressive periodontitis.

Elabdeen HR, Mustafa M, Hasturk H, Klepac-Ceraj V, Ali RW, Paster BJ, Van Dyke T, Bolstad AI.

J Periodontal Res. 2015 Oct;50(5):674-82. doi: 10.1111/jre.12250. Epub 2014 Dec 9.


The association between the upper digestive tract microbiota by HOMIM and oral health in a population-based study in Linxian, China.

Yu G, Dye BA, Gail MH, Shi J, Klepac-Ceraj V, Paster BJ, Wang GQ, Wei WQ, Fan JH, Qiao YL, Dawsey SM, Freedman ND, Abnet CC.

BMC Public Health. 2014 Oct 27;14:1110. doi: 10.1186/1471-2458-14-1110.


Bacterial Composition at the Implant-Abutment Connection under Loading in vivo.

Romanos GE, Biltucci MT, Kokaras A, Paster BJ.

Clin Implant Dent Relat Res. 2016 Feb;18(1):138-45. doi: 10.1111/cid.12270. Epub 2014 Sep 5.


Microbial signature profiles of periodontally healthy and diseased patients.

Lourenço TG, Heller D, Silva-Boghossian CM, Cotton SL, Paster BJ, Colombo AP.

J Clin Periodontol. 2014 Nov;41(11):1027-36. doi: 10.1111/jcpe.12302. Epub 2014 Sep 22.


Bacterial profiles of saliva in relation to diet, lifestyle factors, and socioeconomic status.

Belstrøm D, Holmstrup P, Nielsen CH, Kirkby N, Twetman S, Heitmann BL, Klepac-Ceraj V, Paster BJ, Fiehn NE.

J Oral Microbiol. 2014 Apr 1;6. doi: 10.3402/jom.v6.23609. eCollection 2014.


Association between upper digestive tract microbiota and cancer-predisposing states in the esophagus and stomach.

Yu G, Gail MH, Shi J, Klepac-Ceraj V, Paster BJ, Dye BA, Wang GQ, Wei WQ, Fan JH, Qiao YL, Dawsey SM, Freedman ND, Abnet CC.

Cancer Epidemiol Biomarkers Prev. 2014 May;23(5):735-41. doi: 10.1158/1055-9965.EPI-13-0855. Epub 2014 Apr 3.


Altered bacterial profiles in saliva from adults with caries lesions: a case-cohort study.

Belstrøm D, Fiehn NE, Nielsen CH, Holmstrup P, Kirkby N, Klepac-Ceraj V, Paster BJ, Twetman S.

Caries Res. 2014;48(5):368-75. doi: 10.1159/000357502. Epub 2014 Mar 12.

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