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Items: 1 to 50 of 64

1.

Todos Santos small RNA symposium.

Winkenbach LP, Doser R, Reed KJ, Pasquinelli AE, Phillips CM, Claycomb JM.

RNA Biol. 2019 Aug 9:1-5. doi: 10.1080/15476286.2019.1649586. [Epub ahead of print]

PMID:
31397621
2.

Remodeling of the Caenorhabditis elegans non-coding RNA transcriptome by heat shock.

Schreiner WP, Pagliuso DC, Garrigues JM, Chen JS, Aalto AP, Pasquinelli AE.

Nucleic Acids Res. 2019 Aug 9. pii: gkz693. doi: 10.1093/nar/gkz693. [Epub ahead of print]

PMID:
31396626
3.

RNA interference may result in unexpected phenotypes in Caenorhabditis elegans.

De-Souza EA, Camara H, Salgueiro WG, Moro RP, Knittel TL, Tonon G, Pinto S, Pinca APF, Antebi A, Pasquinelli AE, Massirer KB, Mori MA.

Nucleic Acids Res. 2019 May 7;47(8):3957-3969. doi: 10.1093/nar/gkz154.

4.

miRNA Targeting: Growing beyond the Seed.

Chipman LB, Pasquinelli AE.

Trends Genet. 2019 Mar;35(3):215-222. doi: 10.1016/j.tig.2018.12.005. Epub 2019 Jan 9. Review.

PMID:
30638669
5.

Tales of Detailed Poly(A) Tails.

Nicholson AL, Pasquinelli AE.

Trends Cell Biol. 2019 Mar;29(3):191-200. doi: 10.1016/j.tcb.2018.11.002. Epub 2018 Nov 29. Review.

PMID:
30503240
6.

Detection of microRNA-Target Interactions by Chimera PCR (ChimP).

Broughton JP, Pasquinelli AE.

Methods Mol Biol. 2018;1823:153-165. doi: 10.1007/978-1-4939-8624-8_12.

PMID:
29959680
7.

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging.

Aalto AP, Nicastro IA, Broughton JP, Chipman LB, Schreiner WP, Chen JS, Pasquinelli AE.

PLoS Genet. 2018 Jun 21;14(6):e1007379. doi: 10.1371/journal.pgen.1007379. eCollection 2018 Jun.

8.

A rADAR defense against RNAi.

Pasquinelli AE.

Genes Dev. 2018 Feb 1;32(3-4):199-201. doi: 10.1101/gad.313049.118. Review.

9.

Short poly(A) tails are a conserved feature of highly expressed genes.

Lima SA, Chipman LB, Nicholson AL, Chen YH, Yee BA, Yeo GW, Coller J, Pasquinelli AE.

Nat Struct Mol Biol. 2017 Dec;24(12):1057-1063. doi: 10.1038/nsmb.3499. Epub 2017 Nov 6.

10.

A sense-able microRNA.

Pasquinelli AE.

Genes Dev. 2016 Sep 15;30(18):2019-2020.

11.

Pairing beyond the Seed Supports MicroRNA Targeting Specificity.

Broughton JP, Lovci MT, Huang JL, Yeo GW, Pasquinelli AE.

Mol Cell. 2016 Oct 20;64(2):320-333. doi: 10.1016/j.molcel.2016.09.004. Epub 2016 Oct 6.

12.

A tale of two sequences: microRNA-target chimeric reads.

Broughton JP, Pasquinelli AE.

Genet Sel Evol. 2016 Apr 4;48:31. doi: 10.1186/s12711-016-0209-x. Review.

13.

Period homolog LIN-42 regulates miRNA transcription to impact developmental timing.

Van Wynsberghe PM, Pasquinelli AE.

Worm. 2014 Dec 7;3(4):e974453. doi: 10.4161/21624054.2014.974453. eCollection 2014 Oct-Dec.

14.

Splicing remodels the let-7 primary microRNA to facilitate Drosha processing in Caenorhabditis elegans.

Mondol V, Ahn BC, Pasquinelli AE.

RNA. 2015 Aug;21(8):1396-403. doi: 10.1261/rna.052118.115. Epub 2015 Jun 16.

15.

MicroRNAs: heralds of the noncoding RNA revolution.

Pasquinelli AE.

RNA. 2015 Apr;21(4):709-10. doi: 10.1261/rna.049981.115. No abstract available.

16.

Identification of miRNAs and their targets in C. elegans.

Lima SA, Pasquinelli AE.

Adv Exp Med Biol. 2014;825:431-50. doi: 10.1007/978-1-4939-1221-6_12. Review.

PMID:
25201113
17.

Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes.

Fonslow BR, Moresco JJ, Tu PG, Aalto AP, Pasquinelli AE, Dillin AG, Yates JR 3rd.

WormBook. 2014 Jun 24:1-18. doi: 10.1895/wormbook.1.171.1. Review.

18.

The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.

Van Wynsberghe PM, Finnegan EF, Stark T, Angelus EP, Homan KE, Yeo GW, Pasquinelli AE.

Dev Biol. 2014 Jun 15;390(2):126-35. doi: 10.1016/j.ydbio.2014.03.017. Epub 2014 Mar 31.

19.

MicroRNAs that interfere with RNAi.

Massirer KB, Pasquinelli AE.

Worm. 2013 Jan 1;2(1):e21835. doi: 10.4161/worm.21835.

20.

The primary target of let-7 microRNA.

Pasquinelli AE.

Biochem Soc Trans. 2013 Aug;41(4):821-4. doi: 10.1042/BST20130020.

PMID:
23863138
21.

Identifying Argonaute binding sites in Caenorhabditis elegans using iCLIP.

Broughton JP, Pasquinelli AE.

Methods. 2013 Sep 15;63(2):119-25. doi: 10.1016/j.ymeth.2013.03.033. Epub 2013 Apr 10.

22.

Functional genomic analysis of the let-7 regulatory network in Caenorhabditis elegans.

Hunter SE, Finnegan EF, Zisoulis DG, Lovci MT, Melnik-Martinez KV, Yeo GW, Pasquinelli AE.

PLoS Genet. 2013;9(3):e1003353. doi: 10.1371/journal.pgen.1003353. Epub 2013 Mar 14.

23.

Multiple cis-elements and trans-acting factors regulate dynamic spatio-temporal transcription of let-7 in Caenorhabditis elegans.

Kai ZS, Finnegan EF, Huang S, Pasquinelli AE.

Dev Biol. 2013 Feb 1;374(1):223-33. doi: 10.1016/j.ydbio.2012.11.021. Epub 2012 Nov 30.

24.

MicroRNA biogenesis: regulating the regulators.

Finnegan EF, Pasquinelli AE.

Crit Rev Biochem Mol Biol. 2013 Jan-Feb;48(1):51-68. doi: 10.3109/10409238.2012.738643. Epub 2012 Nov 19. Review.

25.

Birthing histone mRNAs by CSR-1 section.

Pasquinelli AE.

EMBO J. 2012 Oct 3;31(19):3790-1. doi: 10.1038/emboj.2012.254. Epub 2012 Sep 7. No abstract available.

26.

Autoregulation of microRNA biogenesis by let-7 and Argonaute.

Zisoulis DG, Kai ZS, Chang RK, Pasquinelli AE.

Nature. 2012 Jun 28;486(7404):541-4. doi: 10.1038/nature11134.

27.

Small non-coding RNAs mount a silent revolution in gene expression.

Aalto AP, Pasquinelli AE.

Curr Opin Cell Biol. 2012 Jun;24(3):333-40. doi: 10.1016/j.ceb.2012.03.006. Epub 2012 Mar 28. Review.

28.

The miR-35-41 family of microRNAs regulates RNAi sensitivity in Caenorhabditis elegans.

Massirer KB, Perez SG, Mondol V, Pasquinelli AE.

PLoS Genet. 2012;8(3):e1002536. doi: 10.1371/journal.pgen.1002536. Epub 2012 Mar 8.

29.

MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship.

Pasquinelli AE.

Nat Rev Genet. 2012 Mar 13;13(4):271-82. doi: 10.1038/nrg3162. Review.

PMID:
22411466
30.

Let's make it happen: the role of let-7 microRNA in development.

Mondol V, Pasquinelli AE.

Curr Top Dev Biol. 2012;99:1-30. doi: 10.1016/B978-0-12-387038-4.00001-X. Review.

PMID:
22365733
31.

A team effort blocks the ribosome in its tracks.

Pasquinelli AE.

Nat Struct Mol Biol. 2012 Feb 3;19(2):133-4. doi: 10.1038/nsmb.2236. No abstract available.

PMID:
22301874
32.

Analysis of microRNA expression and function.

Van Wynsberghe PM, Chan SP, Slack FJ, Pasquinelli AE.

Methods Cell Biol. 2011;106:219-252. doi: 10.1016/B978-0-12-544172-8.00008-6. Review.

33.

Comprehensive identification of miRNA target sites in live animals.

Zisoulis DG, Yeo GW, Pasquinelli AE.

Methods Mol Biol. 2011;732:169-85. doi: 10.1007/978-1-61779-083-6_13.

PMID:
21431713
34.

LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans.

Van Wynsberghe PM, Kai ZS, Massirer KB, Burton VH, Yeo GW, Pasquinelli AE.

Nat Struct Mol Biol. 2011 Mar;18(3):302-8. doi: 10.1038/nsmb.1986. Epub 2011 Feb 6.

35.

Regulation of lin-4 miRNA expression, organismal growth and development by a conserved RNA binding protein in C. elegans.

Bracht JR, Van Wynsberghe PM, Mondol V, Pasquinelli AE.

Dev Biol. 2010 Dec 15;348(2):210-21. doi: 10.1016/j.ydbio.2010.10.003. Epub 2010 Oct 16.

36.

Molecular biology. Paring miRNAs through pairing.

Pasquinelli AE.

Science. 2010 Jun 18;328(5985):1494-5. doi: 10.1126/science.1191531. No abstract available.

PMID:
20558697
37.

MicroRNAs and cancer: a meeting summary of the eponymous Keystone Conference.

Godshalk SE, Melnik-Martinez KV, Pasquinelli AE, Slack FJ.

Epigenetics. 2010 Feb 16;5(2):164-8. Epub 2010 Feb 11.

PMID:
20168081
38.

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans.

Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW.

Nat Struct Mol Biol. 2010 Feb;17(2):173-9. doi: 10.1038/nsmb.1745. Epub 2010 Jan 10.

39.

A genome wide view of hunchback-like-1 targets.

Kai Z, Pasquinelli AE.

Cell Cycle. 2010 Jan 15;9(2):230-1. Epub 2010 Jan 15. No abstract available.

PMID:
20061795
40.

MicroRNA assassins: factors that regulate the disappearance of miRNAs.

Kai ZS, Pasquinelli AE.

Nat Struct Mol Biol. 2010 Jan;17(1):5-10. doi: 10.1038/nsmb.1762. Review.

41.

A distinct microRNA signature for definitive endoderm derived from human embryonic stem cells.

Hinton A, Afrikanova I, Wilson M, King CC, Maurer B, Yeo GW, Hayek A, Pasquinelli AE.

Stem Cells Dev. 2010 Jun;19(6):797-807. doi: 10.1089/scd.2009.0224.

PMID:
19807270
42.

Uncoupling of lin-14 mRNA and protein repression by nutrient deprivation in Caenorhabditis elegans.

Holtz J, Pasquinelli AE.

RNA. 2009 Mar;15(3):400-5. doi: 10.1261/rna.1258309. Epub 2009 Jan 20.

43.

Computational prediction and experimental validation of Ciona intestinalis microRNA genes.

Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T.

BMC Genomics. 2007 Nov 29;8:445.

44.

MicroRNA silencing through RISC recruitment of eIF6.

Chendrimada TP, Finn KJ, Ji X, Baillat D, Gregory RI, Liebhaber SA, Pasquinelli AE, Shiekhattar R.

Nature. 2007 Jun 14;447(7146):823-8. Epub 2007 May 16.

PMID:
17507929
45.

Demystifying small RNA pathways.

Pasquinelli AE.

Dev Cell. 2006 Apr;10(4):419-24. No abstract available.

46.

The evolving role of microRNAs in animal gene expression.

Massirer KB, Pasquinelli AE.

Bioessays. 2006 May;28(5):449-52. Review.

PMID:
16615087
47.

Identification and analysis of microRNAs.

Bagga S, Pasquinelli AE.

Genet Eng (N Y). 2006;27:1-20. Review. No abstract available.

PMID:
16382868
48.

Analysis of the regulation of lin-41 during chick and mouse limb development.

Lancman JJ, Caruccio NC, Harfe BD, Pasquinelli AE, Schageman JJ, Pertsemlidis A, Fallon JF.

Dev Dyn. 2005 Dec;234(4):948-60.

49.

Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation.

Bagga S, Bracht J, Hunter S, Massirer K, Holtz J, Eachus R, Pasquinelli AE.

Cell. 2005 Aug 26;122(4):553-63.

50.

MicroRNAs: a developing story.

Pasquinelli AE, Hunter S, Bracht J.

Curr Opin Genet Dev. 2005 Apr;15(2):200-5. Review.

PMID:
15797203

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