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Items: 1 to 50 of 194

1.

CLoDSA: a tool for augmentation in classification, localization, detection, semantic segmentation and instance segmentation tasks.

Casado-García Á, Domínguez C, García-Domínguez M, Heras J, Inés A, Mata E, Pascual V.

BMC Bioinformatics. 2019 Jun 13;20(1):323. doi: 10.1186/s12859-019-2931-1.

2.

[SEA/SEMERGEN consensus document 2019: Dietary recommendations in the prevention of cardiovascular disease].

Pascual V, Perez Martinez P, Fernández JM, Solá R, Pallarés V, Romero Secín A, Pérez Jiménez F, Ros E.

Semergen. 2019 Jun 1. pii: S1138-3593(19)30130-3. doi: 10.1016/j.semerg.2019.02.015. [Epub ahead of print] Spanish.

PMID:
31164311
3.

Functional rare and low frequency variants in BLK and BANK1 contribute to human lupus.

Jiang SH, Athanasopoulos V, Ellyard JI, Chuah A, Cappello J, Cook A, Prabhu SB, Cardenas J, Gu J, Stanley M, Roco JA, Papa I, Yabas M, Walters GD, Burgio G, McKeon K, Byers JM, Burrin C, Enders A, Miosge LA, Canete PF, Jelusic M, Tasic V, Lungu AC, Alexander SI, Kitching AR, Fulcher DA, Shen N, Arsov T, Gatenby PA, Babon JJ, Mallon DF, de Lucas Collantes C, Stone EA, Wu P, Field MA, Andrews TD, Cho E, Pascual V, Cook MC, Vinuesa CG.

Nat Commun. 2019 May 17;10(1):2201. doi: 10.1038/s41467-019-10242-9.

4.

DeepClas4Bio: Connecting bioimaging tools with deep learning frameworks for image classification.

Inés A, Domínguez C, Heras J, Mata E, Pascual V.

Comput Biol Med. 2019 May;108:49-56. doi: 10.1016/j.compbiomed.2019.03.026. Epub 2019 Apr 6.

PMID:
31003179
5.

Neuromyelitis optica spectrum disorder in a tertiary hospital in the Philippines: a case series.

Espiritu AI, Mesina BVQ, Puerto AAD, Reyes NGD, Damian LF, Pascual V JLR.

Mult Scler Relat Disord. 2019 Jun;31:124-130. doi: 10.1016/j.msard.2019.04.006. Epub 2019 Apr 6.

PMID:
30981191
6.

Longitudinal profiling of human blood transcriptome in healthy and lupus pregnancy.

Hong S, Banchereau R, Maslow BL, Guerra MM, Cardenas J, Baisch J, Branch DW, Porter TF, Sawitzke A, Laskin CA, Buyon JP, Merrill J, Sammaritano LR, Petri M, Gatewood E, Cepika AM, Ohouo M, Obermoser G, Anguiano E, Kim TW, Nulsen J, Nehar-Belaid D, Blankenship D, Turner J, Banchereau J, Salmon JE, Pascual V.

J Exp Med. 2019 May 6;216(5):1154-1169. doi: 10.1084/jem.20190185. Epub 2019 Apr 8.

PMID:
30962246
7.

SEA/SEMERGEN consensus document 2019: Dietary recommendations in the prevention of cardiovascular disease.

Pascual V, Perez Martinez P, Fernández JM, Solá R, Pallarés V, Romero Secín A, Pérez Jiménez F, Ros E.

Clin Investig Arterioscler. 2019 Mar 22. pii: S0214-9168(19)30037-3. doi: 10.1016/j.arteri.2019.02.004. [Epub ahead of print] English, Spanish.

PMID:
30910237
8.

OX40L/OX40 axis impairs follicular and natural Treg function in human SLE.

Jacquemin C, Augusto JF, Scherlinger M, Gensous N, Forcade E, Douchet I, Levionnois E, Richez C, Lazaro E, Duffau P, Truchetet ME, Seneschal J, Couzi L, Pellegrin JL, Viallard JF, Schaeverbeke T, Pascual V, Contin-Bordes C, Blanco P.

JCI Insight. 2018 Dec 20;3(24). pii: 122167. doi: 10.1172/jci.insight.122167.

9.

A CD4+ T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate.

Caielli S, Veiga DT, Balasubramanian P, Athale S, Domic B, Murat E, Banchereau R, Xu Z, Chandra M, Chung CH, Walters L, Baisch J, Wright T, Punaro M, Nassi L, Stewart K, Fuller J, Ucar D, Ueno H, Zhou J, Banchereau J, Pascual V.

Nat Med. 2019 Jan;25(1):75-81. doi: 10.1038/s41591-018-0254-9. Epub 2018 Nov 26.

10.

Expression patterns common and unique to ulcerative colitis and celiac disease.

Medrano LM, Pascual V, Bodas A, López-Palacios N, Salazar I, Espino-Paisán L, González-Pérez B, Urcelay E, Mendoza JL, Núñez C.

Ann Hum Genet. 2019 Mar;83(2):86-94. doi: 10.1111/ahg.12293. Epub 2018 Nov 6.

PMID:
30402962
11.

Document of recommendations of the SEA 2018. Lifestyle in cardiovascular prevention.

Pérez-Jiménez F, Pascual V, Meco JF, Pérez Martínez P, Delgado Lista J, Domenech M, Estruch R, León-Acuña A, López-Miranda J, Sánchez-Ramos A, Soler I Ferrer C, Soler-Rivas C, Solá Alberich RM, Valdivielso P, Ros E.

Clin Investig Arterioscler. 2018 Nov - Dec;30(6):280-310. doi: 10.1016/j.arteri.2018.06.005. Epub 2018 Sep 17. Review. English, Spanish.

12.

IL1 Receptor Antagonist Controls Transcriptional Signature of Inflammation in Patients with Metastatic Breast Cancer.

Wu TC, Xu K, Martinek J, Young RR, Banchereau R, George J, Turner J, Kim KI, Zurawski S, Wang X, Blankenship D, Brookes HM, Marches F, Obermoser G, Lavecchio E, Levin MK, Bae S, Chung CH, Smith JL, Cepika AM, Oxley KL, Snipes GJ, Banchereau J, Pascual V, O'Shaughnessy J, Palucka AK.

Cancer Res. 2018 Sep 15;78(18):5243-5258. doi: 10.1158/0008-5472.CAN-18-0413. Epub 2018 Jul 16.

13.

Interleukin-1 in monocyte activation phenotypes in systemic juvenile idiopathic arthritis: Observations from a clinical trial of rilonacept, an interleukin-1 inhibitor.

Zhang Y, Gupta S, Ilstad-Minnihan A, Ayyangar S, Hay AD, Pascual V, Ilowite NT, Macaubas C, Mellins ED.

Clin Immunol. 2018 Sep;194:9-18. doi: 10.1016/j.clim.2018.06.005. Epub 2018 Jun 19.

PMID:
29928998
14.

Evaluation of T cells in blood after a short gluten challenge for coeliac disease diagnosis.

López-Palacios N, Pascual V, Castaño M, Bodas A, Fernández-Prieto M, Espino-Paisán L, Martínez-Ojinaga E, Salazar I, Martínez-Curiel R, Rey E, Estrada L, Molero-Abraham M, Reche PA, Dieli-Crimi R, Núñez C.

Dig Liver Dis. 2018 Nov;50(11):1183-1188. doi: 10.1016/j.dld.2018.04.014. Epub 2018 Apr 27.

15.

Whole blood transcriptional profiles as a prognostic tool in complete and incomplete Kawasaki Disease.

Jaggi P, Mejias A, Xu Z, Yin H, Moore-Clingenpeel M, Smith B, Burns JC, Tremoulet AH, Jordan-Villegas A, Chaussabel D, Texter K, Pascual V, Ramilo O.

PLoS One. 2018 May 29;13(5):e0197858. doi: 10.1371/journal.pone.0197858. eCollection 2018.

16.

DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strains.

Domínguez C, Heras J, Mata E, Pascual V.

BMC Bioinformatics. 2018 Feb 27;19(1):66. doi: 10.1186/s12859-018-2082-9.

17.

A multidimensional blood stimulation assay reveals immune alterations underlying systemic juvenile idiopathic arthritis.

Cepika AM, Banchereau R, Segura E, Ohouo M, Cantarel B, Goller K, Cantrell V, Ruchaud E, Gatewood E, Nguyen P, Gu J, Anguiano E, Zurawski S, Baisch JM, Punaro M, Baldwin N, Obermoser G, Palucka K, Banchereau J, Amigorena S, Pascual V.

J Exp Med. 2017 Nov 6;214(11):3449-3466. doi: 10.1084/jem.20170412. Epub 2017 Sep 21.

18.

Constitutive resistance to viral infection in human CD141+ dendritic cells.

Silvin A, Yu CI, Lahaye X, Imperatore F, Brault JB, Cardinaud S, Becker C, Kwan WH, Conrad C, Maurin M, Goudot C, Marques-Ladeira S, Wang Y, Pascual V, Anguiano E, Albrecht RA, Iannacone M, García-Sastre A, Goud B, Dalod M, Moris A, Merad M, Palucka AK, Manel N.

Sci Immunol. 2017 Jul 7;2(13). pii: eaai8071. doi: 10.1126/sciimmunol.aai8071.

19.

Open-Label, Phase II Study to Assess the Efficacy and Safety of Canakinumab Treatment in Active Hyperimmunoglobulinemia D With Periodic Fever Syndrome.

Arostegui JI, Anton J, Calvo I, Robles A, Iglesias E, López-Montesinos B, Banchereau R, Hong S, Joubert Y, Junge G, Pascual V, Yagüe J.

Arthritis Rheumatol. 2017 Aug;69(8):1679-1688. doi: 10.1002/art.40146. Epub 2017 Jul 5.

20.

Antibiogramj: A tool for analysing images from disk diffusion tests.

Alonso CA, Domínguez C, Heras J, Mata E, Pascual V, Torres C, Zarazaga M.

Comput Methods Programs Biomed. 2017 May;143:159-169. doi: 10.1016/j.cmpb.2017.03.010. Epub 2017 Mar 11.

PMID:
28391814
21.

IJ-OpenCV: Combining ImageJ and OpenCV for processing images in biomedicine.

Domínguez C, Heras J, Pascual V.

Comput Biol Med. 2017 May 1;84:189-194. doi: 10.1016/j.compbiomed.2017.03.027. Epub 2017 Apr 1.

PMID:
28390286
22.

Influenza vaccines differentially regulate the interferon response in human dendritic cell subsets.

Athale S, Banchereau R, Thompson-Snipes L, Wang Y, Palucka K, Pascual V, Banchereau J.

Sci Transl Med. 2017 Mar 22;9(382). pii: eaaf9194. doi: 10.1126/scitranslmed.aaf9194.

23.

Extending GelJ for interoperability: Filling the gap in the bioinformatics resources for population genetics analysis with dominant markers.

Domínguez C, Heras J, Mata E, Pascual V, Vázquez-Garcidueñas MS, Vázquez-Marrufo G.

Comput Methods Programs Biomed. 2017 Mar;140:69-76. doi: 10.1016/j.cmpb.2016.12.001. Epub 2016 Dec 6.

PMID:
28254092
24.

Self-Supported Polypyrrole/Polyvinylsulfate Films: Electrochemical Synthesis, Characterization, and Sensing Properties of Their Redox Reactions.

Otero TF, Martinez-Soria LX, Schumacher J, Valero L, Pascual VH.

ChemistryOpen. 2017 Jan 9;6(1):25-32. doi: 10.1002/open.201600139. eCollection 2017 Feb.

25.

Self-Supported Polypyrrole/Polyvinylsulfate Films: Electrochemical Synthesis, Characterization, and Sensing Properties of Their Redox Reactions.

Otero TF, Martinez-Soria LX, Schumacher J, Valero L, Pascual VH.

ChemistryOpen. 2017 Jan 13;6(1):2. doi: 10.1002/open.201700001. eCollection 2017 Feb.

26.

Understanding Human Autoimmunity and Autoinflammation Through Transcriptomics.

Banchereau R, Cepika AM, Banchereau J, Pascual V.

Annu Rev Immunol. 2017 Apr 26;35:337-370. doi: 10.1146/annurev-immunol-051116-052225. Epub 2017 Jan 30. Review.

27.

Modular transcriptional repertoire analyses identify a blood neutrophil signature as a candidate biomarker for lupus nephritis.

Jourde-Chiche N, Whalen E, Gondouin B, Speake C, Gersuk V, Dussol B, Burtey S, Pascual V, Chaussabel D, Chiche L.

Rheumatology (Oxford). 2017 Mar 1;56(3):477-487. doi: 10.1093/rheumatology/kew439.

28.

[Chronic kidney disease and dyslipidaemia].

Pascual V, Serrano A, Pedro-Botet J, Ascaso J, Barrios V, Millán J, Pintó X, Cases A.

Clin Investig Arterioscler. 2017 Jan - Feb;29(1):22-35. doi: 10.1016/j.arteri.2016.07.004. Epub 2016 Nov 15. Review. Spanish.

PMID:
27863896
29.

The Transcriptional Signature of Active Tuberculosis Reflects Symptom Status in Extra-Pulmonary and Pulmonary Tuberculosis.

Blankley S, Graham CM, Turner J, Berry MP, Bloom CI, Xu Z, Pascual V, Banchereau J, Chaussabel D, Breen R, Santis G, Blankenship DM, Lipman M, O'Garra A.

PLoS One. 2016 Oct 5;11(10):e0162220. doi: 10.1371/journal.pone.0162220. eCollection 2016.

30.

Transcriptional Repression of IFN Regulatory Factor 7 by MYC Is Critical for Type I IFN Production in Human Plasmacytoid Dendritic Cells.

Kim TW, Hong S, Lin Y, Murat E, Joo H, Kim T, Pascual V, Liu YJ.

J Immunol. 2016 Oct 15;197(8):3348-3359. Epub 2016 Sep 14.

31.

Bloodstream infections caused by Escherichia coli producing AmpC β-lactamases: epidemiology and clinical features.

Pascual V, Alonso N, Simó M, Ortiz G, Garcia MC, Xercavins M, Rivera A, Morera MA, Miró E, Espejo E, Navarro F, Gurguí M, Pérez J, Rodríguez-Carballeira M, Garau J, Calbo E.

Eur J Clin Microbiol Infect Dis. 2016 Dec;35(12):1997-2003. Epub 2016 Aug 22.

PMID:
27549108
32.

[Opinion from physicians on the need for dyslipidemia screening in cardiovascular risk. Similarities and differences between primary care and other specialties. The DIANA study].

Serrano A, Pascual V; Grupo DIANA.

Semergen. 2017 Oct;43(7):486-492. doi: 10.1016/j.semerg.2016.07.007. Epub 2016 Aug 17. Spanish.

PMID:
27542912
33.

Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.

Banchereau R, Hong S, Cantarel B, Baldwin N, Baisch J, Edens M, Cepika AM, Acs P, Turner J, Anguiano E, Vinod P, Khan S, Obermoser G, Blankenship D, Wakeland E, Nassi L, Gotte A, Punaro M, Liu YJ, Banchereau J, Rossello-Urgell J, Wright T, Pascual V.

Cell. 2016 Jun 2;165(6):1548-1550. doi: 10.1016/j.cell.2016.05.057. No abstract available.

34.

Oxidized mitochondrial nucleoids released by neutrophils drive type I interferon production in human lupus.

Caielli S, Athale S, Domic B, Murat E, Chandra M, Banchereau R, Baisch J, Phelps K, Clayton S, Gong M, Wright T, Punaro M, Palucka K, Guiducci C, Banchereau J, Pascual V.

J Exp Med. 2016 May 2;213(5):697-713. doi: 10.1084/jem.20151876. Epub 2016 Apr 18.

35.

A 380-gene meta-signature of active tuberculosis compared with healthy controls.

Blankley S, Graham CM, Levin J, Turner J, Berry MP, Bloom CI, Xu Z, Pascual V, Banchereau J, Chaussabel D, Breen R, Santis G, Blankenship DM, Lipman M, O'Garra A.

Eur Respir J. 2016 Jun;47(6):1873-6. doi: 10.1183/13993003.02121-2015. Epub 2016 Apr 13. No abstract available.

36.

Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.

Banchereau R, Hong S, Cantarel B, Baldwin N, Baisch J, Edens M, Cepika AM, Acs P, Turner J, Anguiano E, Vinod P, Kahn S, Obermoser G, Blankenship D, Wakeland E, Nassi L, Gotte A, Punaro M, Liu YJ, Banchereau J, Rossello-Urgell J, Wright T, Pascual V.

Cell. 2016 Apr 21;165(3):551-65. doi: 10.1016/j.cell.2016.03.008. Epub 2016 Mar 31. Erratum in: Cell. 2016 Jun 2;165(6):1548-1550.

37.

[Delphi consensus on management of dyslipidaemia in patients with impaired glucose metabolism: Diana study].

Pedro-Botet J, Barrios V, Pascual V, Ascaso JF, Cases A, Millán J, Serrano A, Pintó X.

Clin Investig Arterioscler. 2016 May-Jun;28(3):132-40. doi: 10.1016/j.arteri.2015.12.003. Epub 2016 Mar 2. Spanish.

PMID:
26949071
38.

Analysis of Transcriptional Signatures in Response to Listeria monocytogenes Infection Reveals Temporal Changes That Result from Type I Interferon Signaling.

Pitt JM, Blankley S, Potempa K, Graham CM, Moreira-Teixeira L, McNab FW, Howes A, Stavropoulos E, Pascual V, Banchereau J, Chaussabel D, O'Garra A.

PLoS One. 2016 Feb 26;11(2):e0150251. doi: 10.1371/journal.pone.0150251. eCollection 2016.

39.

Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium.

Finak G, Langweiler M, Jaimes M, Malek M, Taghiyar J, Korin Y, Raddassi K, Devine L, Obermoser G, Pekalski ML, Pontikos N, Diaz A, Heck S, Villanova F, Terrazzini N, Kern F, Qian Y, Stanton R, Wang K, Brandes A, Ramey J, Aghaeepour N, Mosmann T, Scheuermann RH, Reed E, Palucka K, Pascual V, Blomberg BB, Nestle F, Nussenblatt RB, Brinkman RR, Gottardo R, Maecker H, McCoy JP.

Sci Rep. 2016 Feb 10;6:20686. doi: 10.1038/srep20686.

40.

Different Gene Expression Signatures in Children and Adults with Celiac Disease.

Pascual V, Medrano LM, López-Palacios N, Bodas A, Dema B, Fernández-Arquero M, González-Pérez B, Salazar I, Núñez C.

PLoS One. 2016 Feb 9;11(2):e0146276. doi: 10.1371/journal.pone.0146276. eCollection 2016.

41.

Antibodies to Mitotic Apparatus: New Association With Cholestatic Liver Disease.

Pascual V, Perez I, Sánchez-Ramón S, Sánchez-Pobre P.

Am J Gastroenterol. 2015 Dec;110(12):1736-7. doi: 10.1038/ajg.2015.333. No abstract available.

PMID:
26673508
42.

Grancalcin (GCA) modulates Toll-like receptor 9 (TLR9) mediated signaling through its direct interaction with TLR9.

Kim TW, Hong S, Talukder AH, Pascual V, Liu YJ.

Eur J Immunol. 2016 Mar;46(3):712-24. doi: 10.1002/eji.201545567. Epub 2016 Jan 12.

43.

Surveying and benchmarking techniques to analyse DNA gel fingerprint images.

Heras J, Domínguez C, Mata E, Pascual V.

Brief Bioinform. 2016 Nov;17(6):912-925. Epub 2015 Dec 3.

PMID:
26634918
44.

Molecular characterisation of acquired and overproduced chromosomal blaAmpC in Escherichia coli clinical isolates.

Alonso N, Miró E, Pascual V, Rivera A, Simó M, Garcia MC, Xercavins M, Morera MA, Espejo E, Gurguí M, Pérez J, Rodríguez-Carballeira M, Garau J, Calbo E, Navarro F, Mirelis B, Coll P.

Int J Antimicrob Agents. 2016 Jan;47(1):62-8. doi: 10.1016/j.ijantimicag.2015.10.007. Epub 2015 Nov 2.

PMID:
26607336
45.

Rhinovirus Detection in Symptomatic and Asymptomatic Children: Value of Host Transcriptome Analysis.

Heinonen S, Jartti T, Garcia C, Oliva S, Smitherman C, Anguiano E, de Steenhuijsen Piters WA, Vuorinen T, Ruuskanen O, Dimo B, Suarez NM, Pascual V, Ramilo O, Mejias A.

Am J Respir Crit Care Med. 2016 Apr 1;193(7):772-82. doi: 10.1164/rccm.201504-0749OC.

46.

Expansion of inflammatory innate lymphoid cells in patients with common variable immune deficiency.

Cols M, Rahman A, Maglione PJ, Garcia-Carmona Y, Simchoni N, Ko HM, Radigan L, Cerutti A, Blankenship D, Pascual V, Cunningham-Rundles C.

J Allergy Clin Immunol. 2016 Apr;137(4):1206-1215.e6. doi: 10.1016/j.jaci.2015.09.013. Epub 2015 Nov 2.

47.

Response to Infliximab in Crohn's Disease: Genetic Analysis Supporting Expression Profile.

Medrano LM, Taxonera C, González-Artacho C, Pascual V, Gómez-García M, Barreiro-de Acosta M, Pérez-Calle JL, Bermejo F, López-Sanromán A, Martín Arranz D, Gisbert JP, Mendoza JL, Martín J, Núñez C, Urcelay E.

Mediators Inflamm. 2015;2015:318207. doi: 10.1155/2015/318207. Epub 2015 Aug 3.

48.

Rate and Clinical Presentation of Macrophage Activation Syndrome in Patients With Systemic Juvenile Idiopathic Arthritis Treated With Canakinumab.

Grom AA, Ilowite NT, Pascual V, Brunner HI, Martini A, Lovell D, Ruperto N; Paediatric Rheumatology International Trials Organisation and the Pediatric Rheumatology Collaborative Study Group, Leon K, Lheritier K, Abrams K.

Arthritis Rheumatol. 2016 Jan;68(1):218-28. doi: 10.1002/art.39407.

49.

The Blood Transcriptome of Experimental Melioidosis Reflects Disease Severity and Shows Considerable Similarity with the Human Disease.

Conejero L, Potempa K, Graham CM, Spink N, Blankley S, Salguero FJ, Pankla-Sranujit R, Khaenam P, Banchereau JF, Pascual V, Chaussabel D, Lertmemongkolchai G, O'Garra A, Bancroft GJ.

J Immunol. 2015 Oct 1;195(7):3248-3261. doi: 10.4049/jimmunol.1500641. Epub 2015 Aug 26.

50.

GelJ--a tool for analyzing DNA fingerprint gel images.

Heras J, Domínguez C, Mata E, Pascual V, Lozano C, Torres C, Zarazaga M.

BMC Bioinformatics. 2015 Aug 26;16:270. doi: 10.1186/s12859-015-0703-0.

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