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HNF4 Regulates Fatty Acid Oxidation and is Required for Renewal of Intestinal Stem Cells in Mice.

Chen L, Vasoya RP, Toke NH, Parthasarathy A, Luo S, Chiles E, Flores J, Gao N, Bonder EM, Su X, Verzi MP.

Gastroenterology. 2019 Nov 21. pii: S0016-5085(19)41587-4. doi: 10.1053/j.gastro.2019.11.031. [Epub ahead of print]


Time-invariant working memory representations in the presence of code-morphing in the lateral prefrontal cortex.

Parthasarathy A, Tang C, Herikstad R, Cheong LF, Yen SC, Libedinsky C.

Nat Commun. 2019 Nov 1;10(1):4995. doi: 10.1038/s41467-019-12841-y.


The Arabidopsis thaliana gene annotated by the locus tag At3g08860 encodes alanine aminotransferase.

Parthasarathy A, Adams LE, Savka FC, Hudson AO.

Plant Direct. 2019 Sep 18;3(9):e00171. doi: 10.1002/pld3.171. eCollection 2019 Sep.


Cerebral Blood Flow Response During Bolus Normal Saline Infusion After Ischemic Stroke.

Mullen MT, Parthasarathy AB, Zandieh A, Baker WB, Mesquita RC, Loomis C, Torres J, Guo W, Favilla CG, Messé SR, Yodh AG, Detre JA, Kasner SE.

J Stroke Cerebrovasc Dis. 2019 Nov;28(11):104294. doi: 10.1016/j.jstrokecerebrovasdis.2019.07.010. Epub 2019 Aug 13.


The Synthesis and Role of β-Alanine in Plants.

Parthasarathy A, Savka MA, Hudson AO.

Front Plant Sci. 2019 Jul 18;10:921. doi: 10.3389/fpls.2019.00921. eCollection 2019. Review.


HNF4 factors control chromatin accessibility and are redundantly required for maturation of the fetal intestine.

Chen L, Toke NH, Luo S, Vasoya RP, Aita R, Parthasarathy A, Tsai YH, Spence JR, Verzi MP.

Development. 2019 Aug 6;146(19). pii: dev179432. doi: 10.1242/dev.179432.


Isolation, Whole-Genome Sequencing, and Annotation of Yimella sp. RIT 621, a Strain That Produces Antibiotic Compounds against Escherichia coli ATCC 25922 and Bacillus subtilis BGSC 168.

Parthasarathy A, Wong NH, Burns ND, Aziz-Dickerson AH, Dweh J, Buchanan D, Savka MA, Hudson AO.

Microbiol Resour Announc. 2019 Apr 25;8(17). pii: e00329-19. doi: 10.1128/MRA.00329-19.


A reinforcing HNF4-SMAD4 feed-forward module stabilizes enterocyte identity.

Chen L, Toke NH, Luo S, Vasoya RP, Fullem RL, Parthasarathy A, Perekatt AO, Verzi MP.

Nat Genet. 2019 May;51(5):777-785. doi: 10.1038/s41588-019-0384-0. Epub 2019 Apr 15.


SELfies and CELLfies: Whole Genome Sequencing and Annotation of Five Antibiotic Resistant Bacteria Isolated from the Surfaces of Smartphones, An Inquiry Based Laboratory Exercise in a Genomics Undergraduate Course at the Rochester Institute of Technology.

Parthasarathy A, Wong NH, Weiss AN, Tian S, Ali SE, Cavanaugh NT, Chinsky TM, Cramer CE, Gupta A, Jha R, Johnson LK, Tuason ED, Klafehn LM, Krishnadas V, Musich RJ, Pfaff JM, Richman SC, Shumway AJ, Hudson AO.

J Genomics. 2019 Feb 19;7:26-30. doi: 10.7150/jgen.31911. eCollection 2019.


Is Plastic Pollution in Aquatic and Terrestrial Environments a Driver for the Transmission of Pathogens and the Evolution of Antibiotic Resistance?

Parthasarathy A, Tyler AC, Hoffman MJ, Savka MA, Hudson AO.

Environ Sci Technol. 2019 Feb 19;53(4):1744-1745. doi: 10.1021/acs.est.8b07287. Epub 2019 Jan 31. No abstract available.


The Quest for Novel Antimicrobial Compounds: Emerging Trends in Research, Development, and Technologies.

Mantravadi PK, Kalesh KA, Dobson RCJ, Hudson AO, Parthasarathy A.

Antibiotics (Basel). 2019 Jan 24;8(1). pii: E8. doi: 10.3390/antibiotics8010008. Review.


Age-related Changes in Neural Coding of Envelope Cues: Peripheral Declines and Central Compensation.

Parthasarathy A, Bartlett EL, Kujawa SG.

Neuroscience. 2019 May 21;407:21-31. doi: 10.1016/j.neuroscience.2018.12.007. Epub 2018 Dec 14. Review.


Whole-Genome Sequencing and Annotation of Exiguobacterium sp. RIT 452, an Antibiotic-Producing Strain Isolated from a Pond Located on the Campus of the Rochester Institute of Technology.

Parthasarathy A, Wong NH, Cavanaugh NT, Steiner KK, Wengert PC, Savka MA, Hudson AO.

Microbiol Resour Announc. 2018 Nov 1;7(17). pii: e01341-18. doi: 10.1128/MRA.01341-18. eCollection 2018 Nov.


Aging alters envelope representations of speech-like sounds in the inferior colliculus.

Parthasarathy A, Herrmann B, Bartlett EL.

Neurobiol Aging. 2019 Jan;73:30-40. doi: 10.1016/j.neurobiolaging.2018.08.023. Epub 2018 Sep 12.


Isolation and genomic characterization of six endophytic bacteria isolated from Saccharum sp (sugarcane): Insights into antibiotic, secondary metabolite and quorum sensing metabolism.

Parthasarathy A, Gan HM, Wong NH, Savka MA, Steiner KK, Henry KR, Hudson AO.

J Genomics. 2018 Oct 2;6:117-121. doi: 10.7150/jgen.28335. eCollection 2018.


Synaptopathy in the Aging Cochlea: Characterizing Early-Neural Deficits in Auditory Temporal Envelope Processing.

Parthasarathy A, Kujawa SG.

J Neurosci. 2018 Aug 8;38(32):7108-7119. doi: 10.1523/JNEUROSCI.3240-17.2018. Epub 2018 Jul 5.


Laser safety in fiber-optic monitoring of spinal cord hemodynamics: a preclinical evaluation.

Busch DR, Davis J, Kogler A, Galler RM, Parthasarathy AB, Yodh AG, Floyd TF.

J Biomed Opt. 2018 Jun;23(6):1-9. doi: 10.1117/1.JBO.23.6.065003.


A Three-Ring Circus: Metabolism of the Three Proteogenic Aromatic Amino Acids and Their Role in the Health of Plants and Animals.

Parthasarathy A, Cross PJ, Dobson RCJ, Adams LE, Savka MA, Hudson AO.

Front Mol Biosci. 2018 Apr 6;5:29. doi: 10.3389/fmolb.2018.00029. eCollection 2018. Review.


Extended focal length intraocular lens implantation in posttraumatic posterior capsular rupture.

Srinivasaraghavan P, Kumar DA, Agarwal A, Parthasarathy A.

Indian J Ophthalmol. 2018 May;66(5):701-704. doi: 10.4103/ijo.IJO_893_17.


Dynamic autoregulation of cerebral blood flow measured non-invasively with fast diffuse correlation spectroscopy.

Parthasarathy AB, Gannon KP, Baker WB, Favilla CG, Balu R, Kasner SE, Yodh AG, Detre JA, Mullen MT.

J Cereb Blood Flow Metab. 2018 Feb;38(2):230-240. doi: 10.1177/0271678X17747833. Epub 2017 Dec 12.


Mixed selectivity morphs population codes in prefrontal cortex.

Parthasarathy A, Herikstad R, Bong JH, Medina FS, Libedinsky C, Yen SC.

Nat Neurosci. 2017 Dec;20(12):1770-1779. doi: 10.1038/s41593-017-0003-2. Epub 2017 Oct 9.


The Medicinal Chemistry of Therapeutic Peptides: Recent Developments in Synthesis and Design Optimizations.

Parthasarathy A, Anandamma SK, Kalesh KA.

Curr Med Chem. 2019;26(13):2330-2355. doi: 10.2174/0929867324666171012103559. Review.


Noninvasive optical monitoring of critical closing pressure and arteriole compliance in human subjects.

Baker WB, Parthasarathy AB, Gannon KP, Kavuri VC, Busch DR, Abramson K, He L, Mesquita RC, Mullen MT, Detre JA, Greenberg JH, Licht DJ, Balu R, Kofke WA, Yodh AG.

J Cereb Blood Flow Metab. 2017 Aug;37(8):2691-2705. doi: 10.1177/0271678X17709166. Epub 2017 May 25.


Numbness Around the Total Knee Arthroplasty Surgical Scar: Prevalence and Effect on Functional Outcome.

Jariwala AC, Parthasarathy A, Kiran M, Johnston LR, Rowley DI.

J Arthroplasty. 2017 Jul;32(7):2256-2261. doi: 10.1016/j.arth.2017.01.057. Epub 2017 Feb 9.


Non-Invasive Respiratory Impedance Enhances Cerebral Perfusion in Healthy Adults.

Favilla CG, Parthasarathy AB, Detre JA, Yodh AG, Mullen MT, Kasner SE, Gannon K, Messé SR.

Front Neurol. 2017 Feb 16;8:45. doi: 10.3389/fneur.2017.00045. eCollection 2017.


Gut microbial degradation of organophosphate insecticides-induces glucose intolerance via gluconeogenesis.

Velmurugan G, Ramprasath T, Swaminathan K, Mithieux G, Rajendhran J, Dhivakar M, Parthasarathy A, Babu DD, Thumburaj LJ, Freddy AJ, Dinakaran V, Puhari SS, Rekha B, Christy YJ, Anusha S, Divya G, Suganya K, Meganathan B, Kalyanaraman N, Vasudevan V, Kamaraj R, Karthik M, Jeyakumar B, Abhishek A, Paul E, Pushpanathan M, Rajmohan RK, Velayutham K, Lyon AR, Ramasamy S.

Genome Biol. 2017 Jan 24;18(1):8. doi: 10.1186/s13059-016-1134-6.


Ageing affects dual encoding of periodicity and envelope shape in rat inferior colliculus neurons.

Herrmann B, Parthasarathy A, Bartlett EL.

Eur J Neurosci. 2017 Jan;45(2):299-311. doi: 10.1111/ejn.13463. Epub 2016 Nov 21.


Hierarchical winner-take-all particle swarm optimization social network for neural model fitting.

Coventry BS, Parthasarathy A, Sommer AL, Bartlett EL.

J Comput Neurosci. 2017 Feb;42(1):71-85. doi: 10.1007/s10827-016-0628-2. Epub 2016 Oct 10.


Proteomic analysis reveals APC-dependent post-translational modifications and identifies a novel regulator of β-catenin.

Blundon MA, Schlesinger DR, Parthasarathy A, Smith SL, Kolev HM, Vinson DA, Kunttas-Tatli E, McCartney BM, Minden JS.

Development. 2016 Jul 15;143(14):2629-40. doi: 10.1242/dev.130567. Epub 2016 Jun 10.


Fast blood flow monitoring in deep tissues with real-time software correlators.

Wang D, Parthasarathy AB, Baker WB, Gannon K, Kavuri V, Ko T, Schenkel S, Li Z, Li Z, Mullen MT, Detre JA, Yodh AG.

Biomed Opt Express. 2016 Feb 3;7(3):776-97. doi: 10.1364/BOE.7.000776. eCollection 2016 Mar 1.


Histological response of human pulps capped with calcium hydroxide and a self-etch adhesive containing an antibacterial component.

Parthasarathy A, Kamat SB, Kamat M, Kidiyoor KH.

J Conserv Dent. 2016 May-Jun;19(3):274-9. doi: 10.4103/0972-0707.181947.


Age-Related Changes in Processing Simultaneous Amplitude Modulated Sounds Assessed Using Envelope Following Responses.

Parthasarathy A, Lai J, Bartlett EL.

J Assoc Res Otolaryngol. 2016 Apr;17(2):119-32. doi: 10.1007/s10162-016-0554-z. Epub 2016 Feb 23.


Reusable nanoengineered surfaces for bacterial recruitment and decontamination.

Ista LK, Yu Q, Parthasarathy A, Schanze KS, López GP.

Biointerphases. 2016 Mar 6;11(1):019003. doi: 10.1116/1.4939239.


Calibration of diffuse correlation spectroscopy blood flow index with venous-occlusion diffuse optical spectroscopy in skeletal muscle.

Li Z, Baker WB, Parthasarathy AB, Ko TS, Wang D, Schenkel S, Durduran T, Li G, Yodh AG.

J Biomed Opt. 2015;20(12):125005. doi: 10.1117/1.JBO.20.12.125005.


Sensitivity of rat inferior colliculus neurons to frequency distributions.

Herrmann B, Parthasarathy A, Han EX, Obleser J, Bartlett EL.

J Neurophysiol. 2015 Nov;114(5):2941-54. doi: 10.1152/jn.00555.2015. Epub 2015 Sep 9.


Pressure modulation algorithm to separate cerebral hemodynamic signals from extracerebral artifacts.

Baker WB, Parthasarathy AB, Ko TS, Busch DR, Abramson K, Tzeng SY, Mesquita RC, Durduran T, Greenberg JH, Kung DK, Yodh AG.

Neurophotonics. 2015 Jul;2(3):035004. doi: 10.1117/1.NPh.2.3.035004. Epub 2015 Aug 4.


Intraoperative near-infrared fluorescence imaging and spectroscopy identifies residual tumor cells in wounds.

Holt D, Parthasarathy AB, Okusanya O, Keating J, Venegas O, Deshpande C, Karakousis G, Madajewski B, Durham A, Nie S, Yodh AG, Singhal S.

J Biomed Opt. 2015 Jul;20(7):76002. doi: 10.1117/1.JBO.20.7.076002.


Conjugated Polyelectrolytes with Imidazolium Solubilizing Groups. Properties and Application to Photodynamic Inactivation of Bacteria.

Parthasarathy A, Pappas HC, Hill EH, Huang Y, Whitten DG, Schanze KS.

ACS Appl Mater Interfaces. 2015 Dec 30;7(51):28027-34. doi: 10.1021/acsami.5b02771. Epub 2015 Jun 16.


Biochemical and EPR-spectroscopic investigation into heterologously expressed vinyl chloride reductive dehalogenase (VcrA) from Dehalococcoides mccartyi strain VS.

Parthasarathy A, Stich TA, Lohner ST, Lesnefsky A, Britt RD, Spormann AM.

J Am Chem Soc. 2015 Mar 18;137(10):3525-32. doi: 10.1021/ja511653d. Epub 2015 Mar 4.


Diffuse correlation spectroscopy for measurement of cerebral blood flow: future prospects.

Buckley EM, Parthasarathy AB, Grant PE, Yodh AG, Franceschini MA.

Neurophotonics. 2014 Jun 20;1(1). pii: 011009.


Aminoguanidine inhibits ventricular fibrosis and remodeling process in isoproterenol-induced hypertrophied rat hearts by suppressing ROS and MMPs.

Parthasarathy A, Gopi V, Devi K M S, Balaji N, Vellaichamy E.

Life Sci. 2014 Nov 18;118(1):15-26.


Modified Beer-Lambert law for blood flow.

Baker WB, Parthasarathy AB, Busch DR, Mesquita RC, Greenberg JH, Yodh AG.

Biomed Opt Express. 2014 Oct 28;5(11):4053-75. doi: 10.1364/BOE.5.004053. eCollection 2014 Nov 1.


In-gel equilibration for improved protein retention in 2DE-based proteomic workflows.

Van PT, Ganesan V, Bass V, Parthasarathy A, Schlesinger D, Minden JS.

Electrophoresis. 2014 Oct;35(20):3012-7. doi: 10.1002/elps.201400256. Epub 2014 Aug 18.


Age-related changes in the relationship between auditory brainstem responses and envelope-following responses.

Parthasarathy A, Datta J, Torres JA, Hopkins C, Bartlett EL.

J Assoc Res Otolaryngol. 2014 Aug;15(4):649-61. doi: 10.1007/s10162-014-0460-1. Epub 2014 May 21.


Blockade of the VEGF isoforms in inflammatory corneal hemangiogenesis and lymphangiogenesis.

Lipp M, Bucher F, Parthasarathy A, Hos D, Onderka J, Cursiefen C, Bock F.

Graefes Arch Clin Exp Ophthalmol. 2014 Jun;252(6):943-9. doi: 10.1007/s00417-014-2626-2. Epub 2014 Apr 15.


Safety of pentavalent vaccines.

Parthasarathy A.

Indian Pediatr. 2013 Dec;50(12):1162. No abstract available.


Phenylalanine catabolism in Archaeoglobus fulgidus VC-16.

Parthasarathy A, Kahnt J, Chowdhury NP, Buckel W.

Arch Microbiol. 2013 Dec;195(12):781-97. doi: 10.1007/s00203-013-0925-3. Epub 2013 Oct 6.


Triplet sensitization in an anionic poly(phenyleneethynylene) conjugated polyelectrolyte by cationic iridium complexes.

Vella JH, Parthasarathy A, Schanze KS.

J Phys Chem A. 2013 Aug 22;117(33):7818-22. doi: 10.1021/jp405577z. Epub 2013 Aug 6.


A sensitive and selective mercury(II) sensor based on amplified fluorescence quenching in a conjugated polyelectrolyte/spiro-cyclic rhodamine system.

Lee SH, Parthasarathy A, Schanze KS.

Macromol Rapid Commun. 2013 May 14;34(9):791-5. doi: 10.1002/marc.201300020. Epub 2013 Mar 26.


Suppression of atrial natriuretic peptide/natriuretic peptide receptor-A-mediated signaling upregulates angiotensin-II-induced collagen synthesis in adult cardiac fibroblasts.

Parthasarathy A, Gopi V, Umadevi S, Simna A, Sheik MJ, Divya H, Vellaichamy E.

Mol Cell Biochem. 2013 Jun;378(1-2):217-28. doi: 10.1007/s11010-013-1612-z. Epub 2013 Mar 23.


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