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Items: 1 to 50 of 264

1.

Local frustration around enzyme active sites.

Freiberger MI, Guzovsky AB, Wolynes PG, Parra RG, Ferreiro DU.

Proc Natl Acad Sci U S A. 2019 Feb 14. pii: 201819859. doi: 10.1073/pnas.1819859116. [Epub ahead of print]

PMID:
30765513
2.

PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes.

Papadopoulos N, Parra RG, Söding J.

Bioinformatics. 2019 Feb 1. doi: 10.1093/bioinformatics/btz078. [Epub ahead of print]

PMID:
30715210
3.

Nurturing tomorrow's leaders: The ISCB Student Council Symposia in 2018.

Parisi D, Olguín-Orellana GJ, Draizen EJ, Da Rocha Coimbra N, Papadopoulos N, Kirchen S, Gladbach YS, Fadra N, Fatima N, Alex Namasivayam A, Shome S, DeBlasio D, Monzon AM, Rahman F, Parra RG.

F1000Res. 2019 Jan 9;8. pii: ISCB Comm J-34. doi: 10.12688/f1000research.17739.1. eCollection 2019.

4.

Joint status in Spanish haemophilia B patients assessed using the Haemophilia Early Arthropathy Detection with Ultrasound (HEAD-US) score.

Jiménez-Yuste V, Álvarez-Román MT, Martín-Salces M, De la Corte-Rodríguez H, Altisent C, Parra R, Núñez R, Pérez R, García-Candel F, Bonanad S, Querol F, Alonso N, Fernández-Mosteirín N, López-Ansoar E, García-Frade LJ, Bermejo N, Pérez-González N, Gutiérrez-Pimentel MJ, Martinoli C, Fernández-Arias I, Kim HK.

Haemophilia. 2019 Jan;25(1):144-153. doi: 10.1111/hae.13628. Epub 2018 Nov 16.

PMID:
30444298
5.

Stress rapidly suppresses in vivo LH pulses and increases activation of RFRP-3 neurons in male mice

Yang JA, Hughes JK, Parra RA, Volk KM, Kauffman AS.

J Endocrinol. 2018 Oct 31;239(3):339-350. doi: 10.1530/JOE-18-0449.

PMID:
30382693
6.

Unraveling the effect of silent, intronic and missense mutations on VWF splicing: contribution of next generation sequencing in the study of mRNA.

Borràs N, Orriols G, Batlle J, Pérez-Rodríguez A, Fidalgo T, Martinho P, López-Fernández MF, Rodríguez-Trillo Á, Lourés E, Parra R, Altisent C, Cid AR, Bonanad S, Cabrera N, Moret A, Mingot-Castellano ME, Navarro N, Pérez-Montes R, Marcellin S, Moreto A, Herrero S, Soto I, Fernández-Mosteirín N, Jiménez-Yuste V, Alonso N, de Andrés-Jacob A, Fontanes E, Campos R, Paloma MJ, Bermejo N, Berrueco R, Mateo J, Arribalzaga K, Marco P, Palomo Á, Quismondo NC, Iñigo B, Nieto MDM, Vidal R, Martínez MP, Aguinaco R, Tenorio JM, Ferreiro M, García-Frade J, Rodríguez-Huerta AM, Cuesta J, Rodríguez-González R, García-Candel F, Dobón M, Aguilar C, Vidal F, Corrales I.

Haematologica. 2019 Mar;104(3):587-598. doi: 10.3324/haematol.2018.203166. Epub 2018 Oct 25.

7.

Reflections on a journey: a retrospective of the ISCB Student Council symposium series.

Hassan M, Namasivayam AA, DeBlasio D, Fatima N, Siranosian B, Parra RG, Cuypers B, Shome S, Monzon AM, Fumey J, Rahman F.

BMC Bioinformatics. 2018 Oct 9;19(Suppl 12):347. doi: 10.1186/s12859-018-2369-x.

8.

Estradiol-Dependent and -Independent Stimulation of Kiss1 Expression in the Amygdala, BNST, and Lateral Septum of Mice.

Stephens SBZ, Di Giorgio NP, Liaw RB, Parra RA, Yang JA, Chahal N, Lux-Lantos VA, Kauffman AS.

Endocrinology. 2018 Sep 1;159(9):3389-3402. doi: 10.1210/en.2018-00583.

PMID:
30107405
9.

Improvement in clinical outcomes and replacement factor VIII use in patients with haemophilia A after factor VIII pharmacokinetic-guided prophylaxis based on Bayesian models with myPKFiT®.

Mingot-Castellano ME, Parra R, Núñez R, Martorell M.

Haemophilia. 2018 Sep;24(5):e338-e343. doi: 10.1111/hae.13540. Epub 2018 Jul 20.

PMID:
30028549
10.

[Cardiac Magnetic Resonance in long term follow-up of Tetralogy of Fallot].

Arancibia G MF, Valderrama E P, Urcelay M G, Becker R P, González F R, Toro R L, Parra R R.

Rev Chil Pediatr. 2018 Jun;89(3):361-367. doi: 10.4067/S0370-41062018005000202. Spanish.

11.

Flash Smelting Copper Concentrates Spectral Emission Measurements.

Arias L, Torres S, Toro C, Balladares E, Parra R, Loeza C, Villagrán C, Coelho P.

Sensors (Basel). 2018 Jun 22;18(7). pii: E2009. doi: 10.3390/s18072009.

12.

Role of multimeric analysis of von Willebrand factor (VWF) in von Willebrand disease (VWD) diagnosis: Lessons from the PCM-EVW-ES Spanish project.

Pérez-Rodríguez A, Batlle J, Corrales I, Borràs N, Rodríguez-Trillo Á, Lourés E, Cid AR, Bonanad S, Cabrera N, Moret A, Parra R, Mingot-Castellano ME, Navarro N, Altisent C, Pérez-Montes R, Marcellini S, Moreto A, Herrero S, Soto I, Fernández Mosteirín N, Jiménez-Yuste V, Alonso N, de Andrés Jacob A, Fontanes E, Campos R, Paloma MJ, Bermejo N, Berrueco R, Mateo J, Arribalzaga K, Marco P, Palomo Á, Castro Quismondo N, Iñigo B, Nieto MDM, Vidal R, Martínez MP, Aguinaco R, Tenorio M, Ferreiro M, García-Frade J, Rodríguez-Huerta AM, Cuesta J, Rodríguez-González R, García-Candel F, Dobón M, Aguilar C, Batlle F, Vidal F, López-Fernández MF.

PLoS One. 2018 Jun 20;13(6):e0197876. doi: 10.1371/journal.pone.0197876. eCollection 2018.

13.

Infliximab Trough Levels and Quality of Life in Patients with Inflammatory Bowel Disease in Maintenance Therapy.

Parra RS, Feitosa MR, Ribeiro LCH, Castro LA, Rocha JJR, Féres O.

Gastroenterol Res Pract. 2018 May 8;2018:1952086. doi: 10.1155/2018/1952086. eCollection 2018.

14.

Diagnostic delay in acquired haemophilia: Analysis of causes and consequences in a 20-year Spanish cohort.

Pardos-Gea J, Fernández-Díaz N, Parra R, Cortina V, Altisent C.

Haemophilia. 2018 May;24(3):e163-e166. doi: 10.1111/hae.13499. Epub 2018 May 6. No abstract available.

PMID:
29732654
15.

Experimental evidence of charged domain walls in lead-free ferroelectric ceramics: light-driven nanodomain switching.

Rubio-Marcos F, Del Campo A, Rojas-Hernandez RE, Ramírez MO, Parra R, Ichikawa RU, Ramajo LA, Bausá LE, Fernández JF.

Nanoscale. 2018 Jan 3;10(2):705-715. doi: 10.1039/c7nr04304j.

16.

Structural studies of two thermostable laccases from the white-rot fungus Pycnoporus sanguineus.

Orlikowska M, de J Rostro-Alanis M, Bujacz A, Hernández-Luna C, Rubio R, Parra R, Bujacz G.

Int J Biol Macromol. 2018 Feb;107(Pt B):1629-1640. doi: 10.1016/j.ijbiomac.2017.10.024. Epub 2017 Oct 18.

PMID:
29055703
17.

Pattern of bleeding in a large prospective cohort of haemophilia A patients: A three-year follow-up of the AHEAD (Advate in HaEmophilia A outcome Database) study.

Khair K, Mazzucconi MG, Parra R, Santagostino E, Tsakiris DA, Hermans C, Oldenburg J, Spotts G, Steinitz-Trost K, Gringeri A.

Haemophilia. 2018 Jan;24(1):85-96. doi: 10.1111/hae.13361. Epub 2017 Oct 17.

PMID:
29044825
18.

Simultaneous two-photon imaging of intracellular chloride concentration and pH in mouse pyramidal neurons in vivo.

Sulis Sato S, Artoni P, Landi S, Cozzolino O, Parra R, Pracucci E, Trovato F, Szczurkowska J, Luin S, Arosio D, Beltram F, Cancedda L, Kaila K, Ratto GM.

Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):E8770-E8779. doi: 10.1073/pnas.1702861114. Epub 2017 Sep 26.

19.

Acute Psychosocial Stress Inhibits LH Pulsatility and Kiss1 Neuronal Activation in Female Mice.

Yang JA, Song CI, Hughes JK, Kreisman MJ, Parra RA, Haisenleder DJ, Kauffman AS, Breen KM.

Endocrinology. 2017 Nov 1;158(11):3716-3723. doi: 10.1210/en.2017-00301.

20.

Molecular and clinical profile of von Willebrand disease in Spain (PCM-EVW-ES): comprehensive genetic analysis by next-generation sequencing of 480 patients.

Borràs N, Batlle J, Pérez-Rodríguez A, López-Fernández MF, Rodríguez-Trillo Á, Lourés E, Cid AR, Bonanad S, Cabrera N, Moret A, Parra R, Mingot-Castellano ME, Balda I, Altisent C, Pérez-Montes R, Fisac RM, Iruín G, Herrero S, Soto I, de Rueda B, Jiménez-Yuste V, Alonso N, Vilariño D, Arija O, Campos R, Paloma MJ, Bermejo N, Berrueco R, Mateo J, Arribalzaga K, Marco P, Palomo Á, Sarmiento L, Iñigo B, Nieto MDM, Vidal R, Martínez MP, Aguinaco R, César JM, Ferreiro M, García-Frade J, Rodríguez-Huerta AM, Cuesta J, Rodríguez-González R, García-Candel F, Cornudella R, Aguilar C, Vidal F, Corrales I.

Haematologica. 2017 Dec;102(12):2005-2014. doi: 10.3324/haematol.2017.168765. Epub 2017 Sep 29.

21.

Second ISCB Latin American Student Council Symposium (LA-SCS) 2016.

Monzon AM, Hasenahuer MA, Mancini E, Coimbra N, Cravero F, Cáceres-Molina J, Ramírez-Sarmiento CA, Palopoli N, Meysman P, Parra RG.

F1000Res. 2017 Aug 16;6. pii: ISCB Comm J-1491. doi: 10.12688/f1000research.12321.1. eCollection 2017.

22.

Advanced cell-based modeling of the royal disease: characterization of the mutated F9 mRNA.

Martorell L, Luce E, Vazquez JL, Richaud-Patin Y, Jimenez-Delgado S, Corrales I, Borras N, Casacuberta-Serra S, Weber A, Parra R, Altisent C, Follenzi A, Dubart-Kupperschmitt A, Raya A, Vidal F, Barquinero J.

J Thromb Haemost. 2017 Nov;15(11):2188-2197. doi: 10.1111/jth.13808. Epub 2017 Sep 25.

PMID:
28834196
23.

Effects of Selective Deletion of Tyrosine Hydroxylase from Kisspeptin Cells on Puberty and Reproduction in Male and Female Mice.

Stephens SBZ, Rouse ML, Tolson KP, Liaw RB, Parra RA, Chahal N, Kauffman AS.

eNeuro. 2017 Jun 22;4(3). pii: ENEURO.0150-17.2017. doi: 10.1523/ENEURO.0150-17.2017. eCollection 2017 May-Jun.

24.

Inferring repeat-protein energetics from evolutionary information.

Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU.

PLoS Comput Biol. 2017 Jun 15;13(6):e1005584. doi: 10.1371/journal.pcbi.1005584. eCollection 2017 Jun.

25.

Cyclic networks of halogen-bonding interactions in molecular self-assemblies: a theoretical N-X...N versus C-X...N investigation.

Parra RD, Castillo Á.

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Apr 1;73(Pt 2):179-187. doi: 10.1107/S2052520617002335. Epub 2017 Mar 14.

PMID:
28362280
26.

Natural history and clinical characteristics of inhibitors in previously treated haemophilia A patients: a case series.

Iorio A, Barbara AM, Makris M, Fischer K, Castaman G, Catarino C, Gilman E, Kavakli K, Lambert T, Lassila R, Lissitchkov T, Mauser-Bunschoten E, Mingot-Castellano ME, Ozdemir N, Pabinger I, Parra R, Pasi J, Peerlinck K, Rauch A, Roussel-Robert V, Serban M, Tagliaferri A, Windyga J, Zanon E.

Haemophilia. 2017 Mar;23(2):255-263. doi: 10.1111/hae.13167. Epub 2017 Feb 15.

27.

ISCB-Student Council Narratives: Strategical development of the ISCB-Regional Student Groups in 2016.

Shome S, Meysman P, Parra RG, Monzon AM, Palopoli N, White B, Rahman F, Hassan M, Özkeserli Z, Ashano E, Hughitt VK, Uzair Khan M, Murphy DJ.

F1000Res. 2016 Dec 20;5. pii: ISCB Comm J-2882. doi: 10.12688/f1000research.10420.1. eCollection 2016.

28.

Estrogen Stimulation of Kiss1 Expression in the Medial Amygdala Involves Estrogen Receptor-α But Not Estrogen Receptor-β.

Stephens SB, Chahal N, Munaganuru N, Parra RA, Kauffman AS.

Endocrinology. 2016 Oct;157(10):4021-4031. Epub 2016 Aug 26.

29.

Phycobiliproteins: A Novel Green Tool from Marine Origin Blue-Green Algae and Red Algae.

Chandra R, Parra R, Iqbal HM.

Protein Pept Lett. 2017;24(2):118-125. doi: 10.2174/0929866523666160802160222. Review.

PMID:
27491380
30.

How to use Nile Red, a selective fluorescent stain for microalgal neutral lipids.

Alemán-Nava GS, Cuellar-Bermudez SP, Cuaresma M, Bosma R, Muylaert K, Ritmann BE, Parra R.

J Microbiol Methods. 2016 Sep;128:74-79. doi: 10.1016/j.mimet.2016.07.011. Epub 2016 Jul 16. Review.

PMID:
27432343
31.

Adjunctive Hyperbaric Oxygen Therapy promotes successful healing in patients with refractory Crohn's disease.

Feitosa MR, Féres Filho O, Tamaki CM, Perazzoli C, Bernardes MV, Parra RS, Rocha JJ, Féres O.

Acta Cir Bras. 2016;31 Suppl 1:19-23. doi: 10.1590/S0102-86502016001300005.

32.

A novel subcutaneous T-shaped bridge device for loop colostomies.

Rocha JJ, Feitosa MR, Stoianov TR, Perazzoli C, Machado VF, Bernardes MV, Parra RS, Féres O.

Acta Cir Bras. 2016;31 Suppl 1:5-7. doi: 10.1590/S0102-86502016001300002.

33.

Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.

Parra RG, Schafer NP, Radusky LG, Tsai MY, Guzovsky AB, Wolynes PG, Ferreiro DU.

Nucleic Acids Res. 2016 Jul 8;44(W1):W356-60. doi: 10.1093/nar/gkw304. Epub 2016 Apr 29.

34.

Protein Repeats from First Principles.

Turjanski P, Parra RG, Espada R, Becher V, Ferreiro DU.

Sci Rep. 2016 Apr 5;6:23959. doi: 10.1038/srep23959.

35.

Erectile Function Recovery after Radical Prostatectomy in Men with High Risk Features.

Recabal P, Assel M, Musser JE, Caras RJ, Sjoberg DD, Coleman JA, Mulhall JP, Parra RO, Scardino PT, Touijer K, Eastham JA, Laudone VP.

J Urol. 2016 Aug;196(2):507-13. doi: 10.1016/j.juro.2016.02.080. Epub 2016 Feb 22.

36.

Tamoxifen promotes differentiation of oligodendrocyte progenitors in vitro.

Barratt HE, Budnick HC, Parra R, Lolley RJ, Perry CN, Nesic O.

Neuroscience. 2016 Apr 5;319:146-54. doi: 10.1016/j.neuroscience.2016.01.026. Epub 2016 Jan 25.

PMID:
26820594
37.

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.

Parra RG, Espada R, Verstraete N, Ferreiro DU.

PLoS Comput Biol. 2015 Dec 21;11(12):e1004659. doi: 10.1371/journal.pcbi.1004659. eCollection 2015 Dec.

38.

INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction.

Parra RG, Rohr CO, Koile D, Perez-Castro C, Yankilevich P.

Bioinformatics. 2016 Apr 15;32(8):1229-31. doi: 10.1093/bioinformatics/btv726. Epub 2015 Dec 12.

PMID:
26656931
39.

Infliximab-associated fulminant hepatic failure in ulcerative colitis: a case report.

Parra RS, Feitosa MR, Machado VF, Ramalho LN, da Rocha JJ, Feres O.

J Med Case Rep. 2015 Oct 30;9:249. doi: 10.1186/s13256-015-0730-5.

40.

Repeat proteins challenge the concept of structural domains.

Espada R, Parra RG, Sippl MJ, Mora T, Walczak AM, Ferreiro DU.

Biochem Soc Trans. 2015 Oct;43(5):844-9. doi: 10.1042/BST20150083. Review.

PMID:
26517892
41.

Early prophylaxis in children with severe haemophilia A: clinical and ultrasound imaging outcomes.

Altisent C, Martorell M, Crespo A, Casas L, Torrents C, Parra R.

Haemophilia. 2016 Mar;22(2):218-224. doi: 10.1111/hae.12792. Epub 2015 Aug 28.

PMID:
26315845
42.

Multidimensional Ultrasound and Computed Tomography Imaging Support in Bleeding Plexiform Neurofibromatosis of the Scalp: A Case Report and Literature Review.

Wortsman X, Lobos N, De la Parra R, Carreno L.

Indian J Dermatol. 2015 Jul-Aug;60(4):421. doi: 10.4103/0019-5154.160522.

43.

Molecular and clinical profile of von Willebrand disease in Spain (PCM-EVW-ES): Proposal for a new diagnostic paradigm.

Batlle J, Pérez-Rodríguez A, Corrales I, López-Fernández MF, Rodríguez-Trillo Á, Lourés E, Cid AR, Bonanad S, Cabrera N, Moret A, Parra R, Mingot-Castellano ME, Balda I, Altisent C, Pérez-Montes R, Fisac RM, Iruín G, Herrero S, Soto I, de Rueda B, Jiménez-Yuste V, Alonso N, Vilariño D, Arija O, Campos R, Paloma MJ, Bermejo N, Toll T, Mateo J, Arribalzaga K, Marco P, Palomo Á, Sarmiento L, Iñigo B, Nieto Mdel M, Vidal R, Martínez MP, Aguinaco R, César JM, Ferreiro M, García-Frade J, Rodríguez-Huerta AM, Cuesta J, Rodríguez-González R, García-Candel F, Cornudella R, Aguilar C, Borràs N, Vidal F.

Thromb Haemost. 2016 Jan;115(1):40-50. doi: 10.1160/TH15-04-0282. Epub 2015 Aug 6.

PMID:
26245874
44.

Biotransformation of Endocrine-Disrupting Compounds in Groundwater: Bisphenol A, Nonylphenol, Ethynylestradiol and Triclosan by a Laccase Cocktail from Pycnoporus sanguineus CS43.

Garcia-Morales R, Rodríguez-Delgado M, Gomez-Mariscal K, Orona-Navar C, Hernandez-Luna C, Torres E, Parra R, Cárdenas-Chávez D, Mahlknecht J, Ornelas-Soto N.

Water Air Soil Pollut. 2015;226(8):251. Epub 2015 Jul 10.

45.

Predicting length of stay after robotic partial nephrectomy.

Bazzi WM, Sjoberg DD, Grasso AA, Bernstein M, Parra R, Coleman JA.

Int Urol Nephrol. 2015 Aug;47(8):1321-5. doi: 10.1007/s11255-015-1044-7. Epub 2015 Jul 9.

46.

Capturing coevolutionary signals inrepeat proteins.

Espada R, Parra RG, Mora T, Walczak AM, Ferreiro DU.

BMC Bioinformatics. 2015 Jul 2;16:207. doi: 10.1186/s12859-015-0648-3.

47.

Highlights from the 1st ISCB Latin American Student Council Symposium 2014. Introduction.

Parra RG, Simonetti FL, Hasenahuer MA, Olguin-Orellana GJ, Shanmugam AK.

BMC Bioinformatics. 2014;16 Suppl 8:A1. Epub 2014 Apr 30.

48.

Hyperbaric oxygen therapy ameliorates TNBS-induced acute distal colitis in rats.

Parra RS, Lopes AH, Carreira EU, Feitosa MR, Cunha FQ, Garcia SB, Cunha TM, da Rocha JJ, Féres O.

Med Gas Res. 2015 Apr 16;5:6. doi: 10.1186/s13618-015-0026-2. eCollection 2015.

49.

Cost analysis of prophylaxis with activated prothrombin complex concentrate vs. on-demand therapy with activated factor VII in severe haemophilia A patients with inhibitors, in Spain.

Villarrubia R, Oyagüez I, Álvarez-Román MT, Mingot-Castellano ME, Parra R, Casado MA.

Haemophilia. 2015 May;21(3):320-9. doi: 10.1111/hae.12681. Epub 2015 Apr 9.

PMID:
25855214
50.

Molecular characterization of ten F8 splicing mutations in RNA isolated from patient's leucocytes: assessment of in silico prediction tools accuracy.

Martorell L, Corrales I, Ramirez L, Parra R, Raya A, Barquinero J, Vidal F.

Haemophilia. 2015 Mar;21(2):249-57. doi: 10.1111/hae.12562. Epub 2015 Feb 5.

PMID:
25652415

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