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Items: 23

1.

Plasmodium vivax chloroquine resistance links to pvcrt transcription in a genetic cross.

Sá JM, Kaslow SR, Moraes Barros RR, Brazeau NF, Parobek CM, Tao D, Salzman RE, Gibson TJ, Velmurugan S, Krause MA, Melendez-Muniz V, Kite WA, Han PK, Eastman RT, Kim A, Kessler EG, Abebe Y, James ER, Chakravarty S, Orr-Gonzalez S, Lambert LE, Engels T, Thomas ML, Fasinu PS, Serre D, Gwadz RW, Walker L, DeConti DK, Mu J, Bailey JA, Sim BKL, Hoffman SL, Fay MP, Dinglasan RR, Juliano JJ, Wellems TE.

Nat Commun. 2019 Sep 20;10(1):4300. doi: 10.1038/s41467-019-12256-9.

2.

Matched Placental and Circulating Plasmodium falciparum Parasites are Genetically Homologous at the var2csa ID1-DBL2X Locus by Deep Sequencing.

Waltmann A, Patel JC, Thwai KL, Hathaway NJ, Parobek CM, Massougbodji A, Fievet N, Bailey JA, Deloron P, Juliano JJ, Ndam NT, Meshnick SR.

Am J Trop Med Hyg. 2018 Jan;98(1):77-82. doi: 10.4269/ajtmh.17-0529.

3.

SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing.

Hathaway NJ, Parobek CM, Juliano JJ, Bailey JA.

Nucleic Acids Res. 2018 Feb 28;46(4):e21. doi: 10.1093/nar/gkx1201.

4.

Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity.

Agrawal S, Moser KA, Morton L, Cummings MP, Parihar A, Dwivedi A, Shetty AC, Drabek EF, Jacob CG, Henrich PP, Parobek CM, Jongsakul K, Huy R, Spring MD, Lanteri CA, Chaorattanakawee S, Lon C, Fukuda MM, Saunders DL, Fidock DA, Lin JT, Juliano JJ, Plowe CV, Silva JC, Takala-Harrison S.

J Infect Dis. 2017 Aug 15;216(4):468-476. doi: 10.1093/infdis/jix334.

5.

Partner-Drug Resistance and Population Substructuring of Artemisinin-Resistant Plasmodium falciparum in Cambodia.

Parobek CM, Parr JB, Brazeau NF, Lon C, Chaorattanakawee S, Gosi P, Barnett EJ, Norris LD, Meshnick SR, Spring MD, Lanteri CA, Bailey JA, Saunders DL, Lin JT, Juliano JJ.

Genome Biol Evol. 2017 Jun 1;9(6):1673-1686. doi: 10.1093/gbe/evx126.

6.

Increased risk of low birth weight in women with placental malaria associated with P. falciparum VAR2CSA clade.

Patel JC, Hathaway NJ, Parobek CM, Thwai KL, Madanitsa M, Khairallah C, Kalilani-Phiri L, Mwapasa V, Massougbodji A, Fievet N, Bailey JA, Ter Kuile FO, Deloron P, Engel SM, Taylor SM, Juliano JJ, Tuikue Ndam N, Meshnick SR.

Sci Rep. 2017 Aug 11;7(1):7768. doi: 10.1038/s41598-017-04737-y.

7.

Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains.

Kanamori H, Parobek CM, Juliano JJ, Johnson JR, Johnston BD, Johnson TJ, Weber DJ, Rutala WA, Anderson DJ.

Antimicrob Agents Chemother. 2017 Jul 25;61(8). pii: e00912-17. doi: 10.1128/AAC.00912-17. Print 2017 Aug.

8.

A Prolonged Outbreak of KPC-3-Producing Enterobacter cloacae and Klebsiella pneumoniae Driven by Multiple Mechanisms of Resistance Transmission at a Large Academic Burn Center.

Kanamori H, Parobek CM, Juliano JJ, van Duin D, Cairns BA, Weber DJ, Rutala WA.

Antimicrob Agents Chemother. 2017 Jan 24;61(2). pii: e01516-16. doi: 10.1128/AAC.01516-16. Print 2017 Feb.

9.

Selective sweep suggests transcriptional regulation may underlie Plasmodium vivax resilience to malaria control measures in Cambodia.

Parobek CM, Lin JT, Saunders DL, Barnett EJ, Lon C, Lanteri CA, Balasubramanian S, Brazeau N, DeConti DK, Garba DL, Meshnick SR, Spring MD, Chuor CM, Bailey JA, Juliano JJ.

Proc Natl Acad Sci U S A. 2016 Dec 13;113(50):E8096-E8105. Epub 2016 Nov 28.

10.

Longitudinal Pooled Deep Sequencing of the Plasmodium vivax K12 Kelch Gene in Cambodia Reveals a Lack of Selection by Artemisinin.

Brazeau NF, Hathaway N, Parobek CM, Lin JT, Bailey JA, Lon C, Saunders DL, Juliano JJ.

Am J Trop Med Hyg. 2016 Dec 7;95(6):1409-1412. Epub 2016 Oct 31.

11.

skelesim: an extensible, general framework for population genetic simulation in R.

Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE.

Mol Ecol Resour. 2017 Jan;17(1):101-109. doi: 10.1111/1755-0998.12607. Epub 2016 Nov 16.

12.

Next-Generation Sequencing and Comparative Analysis of Sequential Outbreaks Caused by Multidrug-Resistant Acinetobacter baumannii at a Large Academic Burn Center.

Kanamori H, Parobek CM, Weber DJ, van Duin D, Rutala WA, Cairns BA, Juliano JJ.

Antimicrob Agents Chemother. 2015 Dec 7;60(3):1249-57. doi: 10.1128/AAC.02014-15.

13.

Pooled Amplicon Deep Sequencing of Candidate Plasmodium falciparum Transmission-Blocking Vaccine Antigens.

Juliano JJ, Parobek CM, Brazeau NF, Ngasala B, Randrianarivelojosia M, Lon C, Mwandagalirwa K, Tshefu A, Dhar R, Das BK, Hoffman I, Martinson F, Mårtensson A, Saunders DL, Kumar N, Meshnick SR.

Am J Trop Med Hyg. 2016 Jan;94(1):143-6. doi: 10.4269/ajtmh.15-0571. Epub 2015 Oct 26.

14.

Use of Oropharyngeal Washes to Diagnose and Genotype Pneumocystis jirovecii.

Juliano JJ, Barnett E, Parobek CM, Taylor SM, Meshnick SR, Stone S, Chang E, Fong S, Huang L.

Open Forum Infect Dis. 2015 Jun 3;2(3):ofv080. doi: 10.1093/ofid/ofv080. eCollection 2015 Sep.

15.

Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex.

Van Treuren W, Ponnusamy L, Brinkerhoff RJ, Gonzalez A, Parobek CM, Juliano JJ, Andreadis TG, Falco RC, Ziegler LB, Hathaway N, Keeler C, Emch M, Bailey JA, Roe RM, Apperson CS, Knight R, Meshnick SR.

Appl Environ Microbiol. 2015 Sep;81(18):6200-9. doi: 10.1128/AEM.01562-15. Epub 2015 Jul 6.

16.

Absence of putative artemisinin resistance mutations among Plasmodium falciparum in Sub-Saharan Africa: a molecular epidemiologic study.

Taylor SM, Parobek CM, DeConti DK, Kayentao K, Coulibaly SO, Greenwood BM, Tagbor H, Williams J, Bojang K, Njie F, Desai M, Kariuki S, Gutman J, Mathanga DP, Mårtensson A, Ngasala B, Conrad MD, Rosenthal PJ, Tshefu AK, Moormann AM, Vulule JM, Doumbo OK, Ter Kuile FO, Meshnick SR, Bailey JA, Juliano JJ.

J Infect Dis. 2015 Mar 1;211(5):680-8. doi: 10.1093/infdis/jiu467. Epub 2014 Sep 1.

17.

Genetic Evidence of Importation of Drug-Resistant Plasmodium falciparum to Guatemala from the Democratic Republic of the Congo.

Patel JC, Taylor SM, Juliao PC, Parobek CM, Janko M, Gonzalez LD, Ortiz L, Padilla N, Tshefu AK, Emch M, Udhayakumar V, Lindblade K, Meshnick SR.

Emerg Infect Dis. 2014 Jun;20(6):932-40. doi: 10.3201/eid2006.131204.

18.

Differing patterns of selection and geospatial genetic diversity within two leading Plasmodium vivax candidate vaccine antigens.

Parobek CM, Bailey JA, Hathaway NJ, Socheat D, Rogers WO, Juliano JJ.

PLoS Negl Trop Dis. 2014 Apr 17;8(4):e2796. doi: 10.1371/journal.pntd.0002796. eCollection 2014 Apr.

19.

Multilocus microsatellite genotyping array for investigation of genetic epidemiology of Pneumocystis jirovecii.

Parobek CM, Jiang LY, Patel JC, Alvarez-Martínez MJ, Miro JM, Worodria W, Andama A, Fong S, Huang L, Meshnick SR, Taylor SM, Juliano JJ.

J Clin Microbiol. 2014 May;52(5):1391-9. doi: 10.1128/JCM.02531-13. Epub 2014 Feb 12.

20.

Diversity of Rickettsiales in the microbiome of the lone star tick, Amblyomma americanum.

Ponnusamy L, Gonzalez A, Van Treuren W, Weiss S, Parobek CM, Juliano JJ, Knight R, Roe RM, Apperson CS, Meshnick SR.

Appl Environ Microbiol. 2014 Jan;80(1):354-9. doi: 10.1128/AEM.02987-13. Epub 2013 Oct 25.

21.

Pooled deep sequencing of Plasmodium falciparum isolates: an efficient and scalable tool to quantify prevailing malaria drug-resistance genotypes.

Taylor SM, Parobek CM, Aragam N, Ngasala BE, Mårtensson A, Meshnick SR, Juliano JJ.

J Infect Dis. 2013 Dec 15;208(12):1998-2006. doi: 10.1093/infdis/jit392. Epub 2013 Aug 1.

22.

Plasmodium falciparum sulfadoxine resistance is geographically and genetically clustered within the DR Congo.

Taylor SM, Antonia AL, Parobek CM, Juliano JJ, Janko M, Emch M, Alam MT, Udhayakumar V, Tshefu AK, Meshnick SR.

Sci Rep. 2013;3:1165. doi: 10.1038/srep01165. Epub 2013 Jan 30.

23.

Haemoglobinopathies and the clinical epidemiology of malaria: a systematic review and meta-analysis.

Taylor SM, Parobek CM, Fairhurst RM.

Lancet Infect Dis. 2012 Jun;12(6):457-68. doi: 10.1016/S1473-3099(12)70055-5. Epub 2012 Mar 23. Review.

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