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Items: 12

1.

From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms.

Parnell JJ, Berka R, Young HA, Sturino JM, Kang Y, Barnhart DM, DiLeo MV.

Front Plant Sci. 2016 Aug 4;7:1110. doi: 10.3389/fpls.2016.01110. eCollection 2016. Review.

2.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

3.

Key Edaphic Properties Largely Explain Temporal and Geographic Variation in Soil Microbial Communities across Four Biomes.

Docherty KM, Borton HM, Espinosa N, Gebhardt M, Gil-Loaiza J, Gutknecht JL, Maes PW, Mott BM, Parnell JJ, Purdy G, Rodrigues PA, Stanish LF, Walser ON, Gallery RE.

PLoS One. 2015 Nov 4;10(11):e0135352. doi: 10.1371/journal.pone.0135352. eCollection 2015.

4.

The founding charter of the Genomic Observatories Network.

Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, Scholin C, Vogler AP, Gates RD, Toonen R, Berteaux-Lecellier V, Barbier M, Barker K, Bertilsson S, Bicak M, Bietz MJ, Bobe J, Bodrossy L, Borja A, Coddington J, Fuhrman J, Gerdts G, Gillespie R, Goodwin K, Hanson PC, Hero JM, Hoekman D, Jansson J, Jeanthon C, Kao R, Klindworth A, Knight R, Kottmann R, Koo MS, Kotoulas G, Lowe AJ, Marteinsson VT, Meyer F, Morrison N, Myrold DD, Pafilis E, Parker S, Parnell JJ, Polymenakou PN, Ratnasingham S, Roderick GK, Rodriguez-Ezpeleta N, Schonrogge K, Simon N, Valette-Silver NJ, Springer YP, Stone GN, Stones-Havas S, Sansone SA, Thibault KM, Wecker P, Wichels A, Wooley JC, Yahara T, Zingone A; GOs-COS.

Gigascience. 2014 Mar 7;3(1):2. doi: 10.1186/2047-217X-3-2.

5.

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock.

Parnell JJ, Callister SJ, Rompato G, Nicora CD, Paša-Tolić L, Williamson A, Pfrender ME.

Sci Rep. 2011;1:25. doi: 10.1038/srep00025. Epub 2011 Jun 29.

6.

Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400.

Patrauchan MA, Parnell JJ, McLeod MP, Florizone C, Tiedje JM, Eltis LD.

Arch Microbiol. 2011 Sep;193(9):641-50. doi: 10.1007/s00203-011-0705-x. Epub 2011 Apr 26.

PMID:
21519854
7.

Functional biogeography as evidence of gene transfer in hypersaline microbial communities.

Parnell JJ, Rompato G, Latta LC 4th, Pfrender ME, Van Nostrand JD, He Z, Zhou J, Andersen G, Champine P, Ganesan B, Weimer BC.

PLoS One. 2010 Sep 23;5(9):e12919. doi: 10.1371/journal.pone.0012919.

8.

Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400.

Parnell JJ, Denef VJ, Park J, Tsoi T, Tiedje JM.

Biodegradation. 2010 Feb;21(1):147-56. doi: 10.1007/s10532-009-9289-4. Epub 2009 Aug 12.

PMID:
19672561
9.

Relating perturbation magnitude to temporal gene expression in biological systems.

Callister SJ, Parnell JJ, Pfrender ME, Hashsham SA.

BMC Res Notes. 2009 Mar 19;2:43. doi: 10.1186/1756-0500-2-43.

10.

Biodiversity in microbial communities: system scale patterns and mechanisms.

Parnell JJ, Crowl TA, Weimer BC, Pfrender ME.

Mol Ecol. 2009 Apr;18(7):1455-62. doi: 10.1111/j.1365-294X.2009.04128.x.

PMID:
19298265
11.

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.

Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15280-7. Epub 2006 Oct 9.

12.

Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress.

Parnell JJ, Park J, Denef V, Tsoi T, Hashsham S, Quensen J 3rd, Tiedje JM.

Appl Environ Microbiol. 2006 Oct;72(10):6607-14. Epub 2006 Aug 21.

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