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Items: 38

1.

Conventional analysis of movement on non-flat surfaces like the plasma membrane makes Brownian motion appear anomalous.

Adler J, Sintorn IM, Strand R, Parmryd I.

Commun Biol. 2019 Jan 8;2:12. doi: 10.1038/s42003-018-0240-2. eCollection 2019.

2.

Quantifying colocalization: the MOC is a hybrid coefficient - an uninformative mix of co-occurrence and correlation.

Adler J, Parmryd I.

J Cell Sci. 2019 Jan 9;132(1). pii: jcs222455. doi: 10.1242/jcs.222455. No abstract available.

3.

Vγ9Vδ2 T cells proliferate in response to phosphoantigens released from erythrocytes infected with asexual and gametocyte stage Plasmodium falciparum.

Liu C, Emami SN, Pettersson J, Ranford-Cartwright L, Faye I, Parmryd I.

Cell Immunol. 2018 Dec;334:11-19. doi: 10.1016/j.cellimm.2018.08.012. Epub 2018 Aug 25.

PMID:
30177348
4.

Interleaflet Coupling, Pinning, and Leaflet Asymmetry-Major Players in Plasma Membrane Nanodomain Formation.

Fujimoto T, Parmryd I.

Front Cell Dev Biol. 2017 Jan 10;4:155. doi: 10.3389/fcell.2016.00155. eCollection 2016. Review.

5.

The T cell receptor resides in ordered plasma membrane nanodomains that aggregate upon patching of the receptor.

Dinic J, Riehl A, Adler J, Parmryd I.

Sci Rep. 2015 May 8;5:10082. doi: 10.1038/srep10082.

6.

Methods applicable to membrane nanodomain studies?

Ashrafzadeh P, Parmryd I.

Essays Biochem. 2015;57:57-68. doi: 10.1042/bse0570057.

PMID:
25658344
7.

Quantifying colocalization: thresholding, void voxels and the H(coef).

Adler J, Parmryd I.

PLoS One. 2014 Nov 6;9(11):e111983. doi: 10.1371/journal.pone.0111983. eCollection 2014.

8.

Cholesterol depletion using methyl-β-cyclodextrin.

Mahammad S, Parmryd I.

Methods Mol Biol. 2015;1232:91-102. doi: 10.1007/978-1-4939-1752-5_8.

PMID:
25331130
9.

Immunogenic and antioxidant effects of a pathogen-associated prenyl pyrophosphate in Anopheles gambiae.

Lindberg BG, Merritt EA, Rayl M, Liu C, Parmryd I, Olofsson B, Faye I.

PLoS One. 2013 Aug 13;8(8):e73868. doi: 10.1371/journal.pone.0073868. eCollection 2013.

10.

Consequences of membrane topography.

Parmryd I, Onfelt B.

FEBS J. 2013 Jun;280(12):2775-84. doi: 10.1111/febs.12209. Epub 2013 Mar 21. Review.

11.

Actin filaments attachment at the plasma membrane in live cells cause the formation of ordered lipid domains.

Dinic J, Ashrafzadeh P, Parmryd I.

Biochim Biophys Acta. 2013 Mar;1828(3):1102-11. doi: 10.1016/j.bbamem.2012.12.004. Epub 2012 Dec 13.

12.

Colocalization analysis in fluorescence microscopy.

Adler J, Parmryd I.

Methods Mol Biol. 2013;931:97-109. doi: 10.1007/978-1-62703-056-4_5.

PMID:
23026999
13.

Visualization and analysis of vascular receptors using confocal laser scanning microscopy and fluorescent ligands.

Daly CJ, Parmryd I, McGrath JC.

Methods Mol Biol. 2012;897:95-107. doi: 10.1007/978-1-61779-909-9_5.

PMID:
22674162
14.

Laurdan and di-4-ANEPPDHQ do not respond to membrane-inserted peptides and are good probes for lipid packing.

Dinic J, Biverståhl H, Mäler L, Parmryd I.

Biochim Biophys Acta. 2011 Jan;1808(1):298-306. doi: 10.1016/j.bbamem.2010.10.002. Epub 2010 Oct 16.

15.

Radiation-induced DNA damage and repair in human gammadelta and alphabeta T-lymphocytes analysed by the alkaline comet assay.

Lisowska H, Deperas-Kaminska M, Haghdoost S, Parmryd I, Wojcik A.

Genome Integr. 2010 Jun 8;1(1):8. doi: 10.1186/2041-9414-1-8.

16.
17.

Plasma membrane topography and interpretation of single-particle tracks.

Adler J, Shevchuk AI, Novak P, Korchev YE, Parmryd I.

Nat Methods. 2010 Mar;7(3):170-1. doi: 10.1038/nmeth0310-170. No abstract available.

PMID:
20195248
18.

Limited cholesterol depletion causes aggregation of plasma membrane lipid rafts inducing T cell activation.

Mahammad S, Dinic J, Adler J, Parmryd I.

Biochim Biophys Acta. 2010 Jun;1801(6):625-34. doi: 10.1016/j.bbalip.2010.02.003. Epub 2010 Feb 11.

PMID:
20153839
19.

Replicate-based noise corrected correlation for accurate measurements of colocalization.

Adler J, Pagakis SN, Parmryd I.

J Microsc. 2008 Apr;230(Pt 1):121-33. doi: 10.1111/j.1365-2818.2008.01967.x.

20.

Cholesterol homeostasis in T cells. Methyl-beta-cyclodextrin treatment results in equal loss of cholesterol from Triton X-100 soluble and insoluble fractions.

Mahammad S, Parmryd I.

Biochim Biophys Acta. 2008 May;1778(5):1251-8. doi: 10.1016/j.bbamem.2008.02.010. Epub 2008 Mar 4.

21.

Recent review on colocalization seem to misunderstand the Pearson correlation coefficient.

Adler J, Parmryd I.

J Microsc. 2007 Jul;227(Pt 1):83; author reply 84-5. No abstract available.

22.

Cold-induced coalescence of T-cell plasma membrane microdomains activates signalling pathways.

Magee AI, Adler J, Parmryd I.

J Cell Sci. 2005 Jul 15;118(Pt 14):3141-51.

23.

Detergent-resistant membranes and the protein composition of lipid rafts.

Magee AI, Parmryd I.

Genome Biol. 2003;4(11):234. Epub 2003 Oct 27. Review.

24.

Imaging metabolism of phosphatidylinositol 4,5-bisphosphate in T-cell GM1-enriched domains containing Ras proteins.

Parmryd I, Adler J, Patel R, Magee AI.

Exp Cell Res. 2003 Apr 15;285(1):27-38.

PMID:
12681284
25.

Proteomics of Synechocystis sp. strain PCC 6803: identification of plasma membrane proteins.

Huang F, Parmryd I, Nilsson F, Persson AL, Pakrasi HB, Andersson B, Norling B.

Mol Cell Proteomics. 2002 Dec;1(12):956-66.

26.

Lipid rafts: cell surface platforms for T cell signaling.

Magee T, Pirinen N, Adler J, Pagakis SN, Parmryd I.

Biol Res. 2002;35(2):127-31. Review.

PMID:
12415729
27.

Apoptotic crosstalk of TNF receptors: TNF-R2-induces depletion of TRAF2 and IAP proteins and accelerates TNF-R1-dependent activation of caspase-8.

Fotin-Mleczek M, Henkler F, Samel D, Reichwein M, Hausser A, Parmryd I, Scheurich P, Schmid JA, Wajant H.

J Cell Sci. 2002 Jul 1;115(Pt 13):2757-70.

28.

Synthesis of mevalonate pathway lipids in fibroblasts from Zellweger and X-linked ALD patients.

Appelkvist EL, Venizelos N, Zhang Y, Parmryd I, Hagenfeldt L, Dallner G.

Pediatr Res. 1999 Sep;46(3):345-50.

PMID:
10473053
29.

Protein prenylation in spinach chloroplasts.

Parmryd I, Andersson B, Dallner G.

Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10074-9.

30.

Subcellular distribution of farnesyl protein transferase in rat liver.

Grünler J, Parmryd I.

FEBS Lett. 1999 Jul 23;455(3):233-7.

31.

In vivo prenylation of rat proteins: modification of proteins with penta- and hexaprenyl groups.

Parmryd I, Dallner G.

Arch Biochem Biophys. 1999 Apr 15;364(2):153-60.

PMID:
10190969
32.

Chloroplastic prenylated proteins.

Parmryd I, Shipton CA, Swiezewska E, Dallner G, Andersson B.

FEBS Lett. 1997 Sep 15;414(3):527-31.

33.

Protein prenylation in spinach--tissue specificity and greening-induced changes.

Parmryd I, Shipton CA, Andersson B, Dallner G.

Arch Biochem Biophys. 1997 Mar 1;339(1):73-8.

PMID:
9056235
34.

Organization of isoprenoid biosynthesis.

Parmryd I, Dallner G.

Biochem Soc Trans. 1996 Aug;24(3):677-82. Review. No abstract available.

PMID:
8878825
35.

Identification of spinach farnesyl protein transferase. Dithiothreitol as an acceptor in vitro.

Parmryd I, Shipton CA, Swiezewska E, Andersson B, Dallner G.

Eur J Biochem. 1995 Dec 15;234(3):723-31.

36.

Distribution of branch point prenyltransferases in regions of bovine brain.

Runquist M, Parmryd I, Thelin A, Chojnacki T, Dallner G.

J Neurochem. 1995 Nov;65(5):2299-306.

PMID:
7595519
37.

Isoprenylation of plant proteins in vivo. Isoprenylated proteins are abundant in the mitochondria and nuclei of spinach.

Shipton CA, Parmryd I, Swiezewska E, Andersson B, Dallner G.

J Biol Chem. 1995 Jan 13;270(2):566-72.

38.

Regulation of coenzyme Q biosynthesis.

Appelkvist EL, Aberg F, Guan Z, Parmryd I, Dallner G.

Mol Aspects Med. 1994;15 Suppl:s37-46. Review.

PMID:
7752843

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