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Model-based characterization of the relationship between dapagliflozin systemic exposure and HbA1c response in patients with type 1 diabetes mellitus.

Parkinson J, Tang W, Åstrand M, Melin J, Ekholm E, Hamrén B, Boulton DW.

Diabetes Obes Metab. 2019 Feb 12. doi: 10.1111/dom.13664. [Epub ahead of print]


On Certain Difficulties of Diagnosis.

Parkinson JP.

Am J Dent Sci. 1898 Mar;31(11):505-518. No abstract available.


Design and application of a novel two-amplicon approach for defining eukaryotic microbiota.

Popovic A, Bourdon C, Wang PW, Guttman DS, Voskuijl W, Grigg ME, Bandsma RHJ, Parkinson J.

Microbiome. 2018 Dec 20;6(1):228. doi: 10.1186/s40168-018-0612-3.


Exploring the insulin secretory properties of the PGD2-GPR44/DP2 axis in vitro and in a randomized phase-1 trial of type 2 diabetes patients.

Skrtic S, Tyrberg B, Broberg M, Ericsson H, Schnecke V, Kjaer M, Hompesch M, Andersson EM, Ryberg E, Aivazidis A, Wennberg Huldt C, Löfgren L, Morrow L, Parkinson J, Rydén-Bergsten T, Watkins E, Sörhede Winzell M.

PLoS One. 2018 Dec 17;13(12):e0208998. doi: 10.1371/journal.pone.0208998. eCollection 2018.


Urinary glucose excretion after dapagliflozin treatment: An exposure-response modelling comparison between Japanese and non-Japanese patients diagnosed with type 1 diabetes mellitus.

Sokolov V, Yakovleva T, Ueda S, Parkinson J, Boulton DW, Penland RC, Tang W.

Diabetes Obes Metab. 2018 Nov 19. doi: 10.1111/dom.13586. [Epub ahead of print]


Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome.

Zou A, Sharif S, Parkinson J.

NPJ Biofilms Microbiomes. 2018 Nov 9;4:27. doi: 10.1038/s41522-018-0070-5. eCollection 2018.


Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues.

Aman K, Padroni G, Parkinson JA, Welte T, Burley GA.

Chemistry. 2018 Nov 8. doi: 10.1002/chem.201805338. [Epub ahead of print]


Author Correction: Gut microbiota-mediated protection against influenza virus subtype H9N2 in chickens is associated with modulation of the innate responses.

Yitbarek A, Taha-Abdelaziz K, Hodgins DC, Read L, Nagy É, Weese JS, Caswell JL, Parkinson J, Sharif S.

Sci Rep. 2018 Oct 31;8(1):16367. doi: 10.1038/s41598-018-34065-8.


Face perception enhances insula and motor network reactivity in Tourette syndrome.

Rae CL, Polyanska L, Gould van Praag CD, Parkinson J, Bouyagoub S, Nagai Y, Seth AK, Harrison NA, Garfinkel SN, Critchley HD.

Brain. 2018 Nov 1;141(11):3249-3261. doi: 10.1093/brain/awy254.


Effect of Melittin on Metabolomic Profile and Cytokine Production in PMA-Differentiated THP-1 Cells.

Alqarni AM, Ferro VA, Parkinson JA, Dufton MJ, Watson DG.

Vaccines (Basel). 2018 Oct 13;6(4). pii: E72. doi: 10.3390/vaccines6040072.


Role of 18F-fluoro-ethyl-tyrosine Positron Emission Tomography in Investigation and Management of Suspected Gliomas.

Ibbett I, Schembri G, Cook R, Parkinson J.

World Neurosurg. 2019 Jan;121:e712-e715. doi: 10.1016/j.wneu.2018.09.194. Epub 2018 Oct 6.


Analyzing Metabolic Pathways in Microbiomes.

Adeolu M, Parkinson J, Xiong X.

Methods Mol Biol. 2018;1849:291-307. doi: 10.1007/978-1-4939-8728-3_18.


Characterization of Eukaryotic Microbiome Using 18S Amplicon Sequencing.

Popovic A, Parkinson J.

Methods Mol Biol. 2018;1849:29-48. doi: 10.1007/978-1-4939-8728-3_3.


FET PET in the evaluation of indeterminate brain lesions on MRI: Differentiating glioma from other non-neoplastic causes - A pilot study.

Chan DL, Hsiao E, Schembri G, Bailey DL, Roach PJ, Lee A, Jayamanne D, Ghasemzadeh M, Hayes A, Cook R, Parkinson J, Drummond JP, Ibbett I, Wheeler HR, Back M.

J Clin Neurosci. 2018 Dec;58:130-135. doi: 10.1016/j.jocn.2018.09.009. Epub 2018 Sep 19.


Gut microbiota-mediated protection against influenza virus subtype H9N2 in chickens is associated with modulation of the innate responses.

Yitbarek A, Taha-Abdelaziz K, Hodgins DC, Read L, Nagy É, Weese JS, Caswell JL, Parkinson J, Sharif S.

Sci Rep. 2018 Sep 4;8(1):13189. doi: 10.1038/s41598-018-31613-0. Erratum in: Sci Rep. 2018 Oct 31;8(1):16367.


Glioblastoma Recurrence Correlates With Increased APE1 and Polarization Toward an Immuno-Suppressive Microenvironment.

Hudson AL, Parker NR, Khong P, Parkinson JF, Dwight T, Ikin RJ, Zhu Y, Chen J, Wheeler HR, Howell VM.

Front Oncol. 2018 Aug 13;8:314. doi: 10.3389/fonc.2018.00314. eCollection 2018.


Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation.

Swapna LS, Molinaro AM, Lindsay-Mosher N, Pearson BJ, Parkinson J.

Genome Biol. 2018 Aug 24;19(1):124. doi: 10.1186/s13059-018-1498-x.


Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts.

LaJeunesse TC, Parkinson JE, Gabrielson PW, Jeong HJ, Reimer JD, Voolstra CR, Santos SR.

Curr Biol. 2018 Aug 20;28(16):2570-2580.e6. doi: 10.1016/j.cub.2018.07.008. Epub 2018 Aug 9.


A Fast and Robust Way to Estimate Overlap of Niches, and Draw Inference.

Parkinson JH, Kutil R, Kuppler J, Junker RR, Trutschnig W, Bathke AC.

Int J Biostat. 2018 Jun 15;14(2). pii: /j/ijb.2018.14.issue-2/ijb-2017-0028/ijb-2017-0028.xml. doi: 10.1515/ijb-2017-0028.


Subtle Differences in Symbiont Cell Surface Glycan Profiles Do Not Explain Species-Specific Colonization Rates in a Model Cnidarian-Algal Symbiosis.

Parkinson JE, Tivey TR, Mandelare PE, Adpressa DA, Loesgen S, Weis VM.

Front Microbiol. 2018 May 1;9:842. doi: 10.3389/fmicb.2018.00842. eCollection 2018.


A tutorial on model informed approaches to cardiovascular safety with focus on cardiac repolarisation.

Cheung SYA, Parkinson J, Wählby-Hamrén U, Dota CD, Kragh ÅM, Bergenholm L, Vik T, Collins T, Arfvidsson C, Pollard CE, Tomkinson HK, Hamrén B.

J Pharmacokinet Pharmacodyn. 2018 May 7. doi: 10.1007/s10928-018-9589-6. [Epub ahead of print]


Improved enzyme annotation with EC-specific cutoffs using DETECT v2.

Nursimulu N, Xu LL, Wasmuth JD, Krukov I, Parkinson J.

Bioinformatics. 2018 Oct 1;34(19):3393-3395. doi: 10.1093/bioinformatics/bty368.


Lifestyle interventions for improving health and health behaviours in women with type 2 diabetes: A systematic review of the literature 2011-2017.

Seib C, Parkinson J, McDonald N, Fujihira H, Zietek S, Anderson D.

Maturitas. 2018 May;111:1-14. doi: 10.1016/j.maturitas.2018.02.008. Epub 2018 Feb 12. Review.


Early preterm nutrition and the urinary metabolome in young adult life: follow-up of a randomised controlled trial.

Parkinson JRC, Wijeyesekera AD, Hyde MJ, Singhal A, Lucas A, Holmes E, Modi N.

BMJ Paediatr Open. 2017 Nov 1;1(1):e000192. doi: 10.1136/bmjpo-2017-000192. eCollection 2017.


A zipped-helix cap potentiates HAMP domain control of chemoreceptor signaling.

Flack CE, Parkinson JS.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):E3519-E3528. doi: 10.1073/pnas.1721554115. Epub 2018 Mar 26.


Drug-related deaths in Scotland 1979-2013: evidence of a vulnerable cohort of young men living in deprived areas.

Parkinson J, Minton J, Lewsey J, Bouttell J, McCartney G.

BMC Public Health. 2018 Mar 27;18(1):357. doi: 10.1186/s12889-018-5267-2.


Regression of prostate tumors after intravenous administration of lactoferrin-bearing polypropylenimine dendriplexes encoding TNF-α, TRAIL, and interleukin-12.

Altwaijry N, Somani S, Parkinson JA, Tate RJ, Keating P, Warzecha M, Mackenzie GR, Leung HY, Dufès C.

Drug Deliv. 2018 Nov;25(1):679-689. doi: 10.1080/10717544.2018.1440666.


Noncritical Signaling Role of a Kinase-Receptor Interaction Surface in the Escherichia coli Chemosensory Core Complex.

Piñas GE, DeSantis MD, Parkinson JS.

J Mol Biol. 2018 Mar 30;430(7):1051-1064. doi: 10.1016/j.jmb.2018.02.004. Epub 2018 Feb 14.


Monitoring Two-Component Sensor Kinases with a Chemotaxis Signal Readout.

Lai RZ, Parkinson JS.

Methods Mol Biol. 2018;1729:127-135. doi: 10.1007/978-1-4939-7577-8_12.


All-Codon Mutagenesis for Structure-Function Studies of Chemotaxis Signaling Proteins.

Ames P, Parkinson JS.

Methods Mol Biol. 2018;1729:79-85. doi: 10.1007/978-1-4939-7577-8_8.


Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals.

Parkinson JE, Bartels E, Devlin-Durante MK, Lustic C, Nedimyer K, Schopmeyer S, Lirman D, LaJeunesse TC, Baums IB.

Mol Ecol. 2018 Mar;27(5):1103-1119. doi: 10.1111/mec.14517. Epub 2018 Mar 23.


Gut microbiota modulates type I interferon and antibody-mediated immune responses in chickens infected with influenza virus subtype H9N2.

Yitbarek A, Alkie T, Taha-Abdelaziz K, Astill J, Rodriguez-Lecompte JC, Parkinson J, Nagy É, Sharif S.

Benef Microbes. 2018 Apr 25;9(3):417-427. doi: 10.3920/BM2017.0088. Epub 2018 Jan 30.


A pilot study exploring rehabilitation nurses' perceptions of 12-hour shifts.

Parkinson J, Arcamone A, Mariani B.

Nursing. 2018 Feb;48(2):60-65. doi: 10.1097/01.NURSE.0000529817.74772.9e. No abstract available.


Influenza A virus subtype H9N2 infection disrupts the composition of intestinal microbiota of chickens.

Yitbarek A, Weese JS, Alkie TN, Parkinson J, Sharif S.

FEMS Microbiol Ecol. 2018 Jan 1;94(1). doi: 10.1093/femsec/fix165.


Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides.

Padroni G, Parkinson JA, Fox KR, Burley GA.

Nucleic Acids Res. 2018 Jan 9;46(1):42-53. doi: 10.1093/nar/gkx1211.


A Systematic Literature Review and Research Agenda for Organ Donation Decision Communication.

Knox K, Parkinson J, Pang B, Fujihira H, David P, Rundle-Thiele S.

Prog Transplant. 2017 Sep;27(3):309-320. doi: 10.1177/1526924817715459. Epub 2017 Jul 4.


Global landscape of cell envelope protein complexes in Escherichia coli.

Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A.

Nat Biotechnol. 2018 Jan;36(1):103-112. doi: 10.1038/nbt.4024. Epub 2017 Nov 27.


Alcohol Warning Label Awareness and Attention: A Multi-method Study.

Pham C, Rundle-Thiele S, Parkinson J, Li S.

Alcohol Alcohol. 2018 Jan 1;53(1):39-45. doi: 10.1093/alcalc/agx087.


Activity of Simulated Human Dosage Regimens of Meropenem and Vaborbactam against Carbapenem-Resistant Enterobacteriaceae in an In Vitro Hollow-Fiber Model.

Sabet M, Tarazi Z, Rubio-Aparicio D, Nolan TG, Parkinson J, Lomovskaya O, Dudley MN, Griffith DC.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e01969-17. doi: 10.1128/AAC.01969-17. Print 2018 Feb.


A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-κB Signaling.

Malty RH, Aoki H, Kumar A, Phanse S, Amin S, Zhang Q, Minic Z, Goebels F, Musso G, Wu Z, Abou-Tok H, Meyer M, Deineko V, Kassir S, Sidhu V, Jessulat M, Scott NE, Xiong X, Vlasblom J, Prasad B, Foster LJ, Alberio T, Garavaglia B, Yu H, Bader GD, Nakamura K, Parkinson J, Babu M.

Cell Syst. 2017 Dec 27;5(6):564-577.e12. doi: 10.1016/j.cels.2017.10.010. Epub 2017 Nov 8.


Activity of Meropenem-Vaborbactam in Mouse Models of Infection Due to KPC-Producing Carbapenem-Resistant Enterobacteriaceae.

Sabet M, Tarazi Z, Nolan T, Parkinson J, Rubio-Aparicio D, Lomovskaya O, Dudley MN, Griffith DC.

Antimicrob Agents Chemother. 2017 Dec 21;62(1). pii: e01446-17. doi: 10.1128/AAC.01446-17. Print 2018 Jan.


A preliminary survey of zoantharian endosymbionts shows high genetic variation over small geographic scales on Okinawa-jima Island, Japan.

Noda H, Parkinson JE, Yang SY, Reimer JD.

PeerJ. 2017 Oct 3;5:e3740. doi: 10.7717/peerj.3740. eCollection 2017.


Cationic lipid-based nanoparticles mediate functional delivery of acetate to tumor cells in vivo leading to significant anticancer effects.

Brody LP, Sahuri-Arisoylu M, Parkinson JR, Parkes HG, So PW, Hajji N, Thomas EL, Frost GS, Miller AD, Bell JD.

Int J Nanomedicine. 2017 Sep 8;12:6677-6685. doi: 10.2147/IJN.S135968. eCollection 2017.


Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine.

Xiong X, Bales ES, Ir D, Robertson CE, McManaman JL, Frank DN, Parkinson J.

Microbiome. 2017 Sep 6;5(1):117. doi: 10.1186/s40168-017-0327-x.


Paradoxical enhancement of chemoreceptor detection sensitivity by a sensory adaptation enzyme.

Lai RZ, Han XS, Dahlquist FW, Parkinson JS.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7583-E7591. doi: 10.1073/pnas.1709075114. Epub 2017 Aug 21.


Gender dysphoria in Klinefelter's syndrome: three cases.

Davies GW, Parkinson J.

Australas Psychiatry. 2018 Jun;26(3):313-314. doi: 10.1177/1039856217715986. Epub 2017 Jul 11.


Predicting QRS and PR interval prolongations in humans using nonclinical data.

Bergenholm L, Parkinson J, Mettetal J, Evans ND, Chappell MJ, Collins T.

Br J Pharmacol. 2017 Oct;174(19):3268-3283. doi: 10.1111/bph.13940. Epub 2017 Aug 24.


Blastomycotic Osteomyelitis: An Unusual Cause of Hand Swelling.

Banerjee S, Dooley TP, Gilroy S, Parkinson JR.

J Hand Surg Am. 2017 Nov;42(11):932.e1-932.e6. doi: 10.1016/j.jhsa.2017.05.026. Epub 2017 Jun 28.


Racing an Opponent: Alteration of Pacing, Performance, and Muscle-Force Decline but Not Rating of Perceived Exertion.

Konings MJ, Parkinson J, Zijdewind I, Hettinga FJ.

Int J Sports Physiol Perform. 2018 Mar 1;13(3):283-289. doi: 10.1123/ijspp.2017-0220. Epub 2018 Mar 1.


Classic Spotlights: Selected Highlights from the First 100 Years of the Journal of Bacteriology.

Armitage JP, Becker A, Christie PJ, de Boer PAJ, DiRita VJ, Gourse RL, Henkin TM, Margolin W, Metcalf WW, Mullineaux CW, O'Toole GA, Parkinson JS, Schneewind O, Silhavy TJ, Stock AM, Zhulin IB.

J Bacteriol. 2017 Jun 13;199(13). pii: e00062-17. doi: 10.1128/JB.00062-17. Print 2017 Jul 1. No abstract available.

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