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Items: 1 to 50 of 70

1.

Genes associated with chloroplasts and hormone-signaling, and transcription factors other than CBFs are associated with differential survival after low temperature treatments of Camelina sativa biotypes.

Horvath D, Anderson JV, Chao WS, Zheng P, Buchwaldt M, Parkin IAP, Dorn K.

PLoS One. 2019 May 31;14(5):e0217692. doi: 10.1371/journal.pone.0217692. eCollection 2019.

2.

Clubroot resistance gene Rcr6 in Brassica nigra resides in a genomic region homologous to chromosome A08 in B. rapa.

Chang A, Lamara M, Wei Y, Hu H, Parkin IAP, Gossen BD, Peng G, Yu F.

BMC Plant Biol. 2019 May 29;19(1):224. doi: 10.1186/s12870-019-1844-5.

3.

Connecting genome structural variation with complex traits in crop plants.

Gabur I, Chawla HS, Snowdon RJ, Parkin IAP.

Theor Appl Genet. 2019 Mar;132(3):733-750. doi: 10.1007/s00122-018-3233-0. Epub 2018 Nov 17. Review.

PMID:
30448864
4.

Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array.

Higgins EE, Clarke WE, Howell EC, Armstrong SJ, Parkin IAP.

G3 (Bethesda). 2018 Jul 31;8(8):2673-2683. doi: 10.1534/g3.118.200118.

5.

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10.

6.

Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus.

Stein A, Coriton O, Rousseau-Gueutin M, Samans B, Schiessl SV, Obermeier C, Parkin IAP, Chèvre AM, Snowdon RJ.

Plant Biotechnol J. 2017 Nov;15(11):1478-1489. doi: 10.1111/pbi.12732. Epub 2017 Apr 27.

7.

A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.

Mason AS, Higgins EE, Snowdon RJ, Batley J, Stein A, Werner C, Parkin IA.

Theor Appl Genet. 2017 Apr;130(4):621-633. doi: 10.1007/s00122-016-2849-1. Epub 2017 Feb 20. Review.

PMID:
28220206
8.

The pangenome of an agronomically important crop plant Brassica oleracea.

Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D.

Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390.

9.

Extensive homoeologous genome exchanges in allopolyploid crops revealed by mRNAseq-based visualization.

He Z, Wang L, Harper AL, Havlickova L, Pradhan AK, Parkin IAP, Bancroft I.

Plant Biotechnol J. 2017 May;15(5):594-604. doi: 10.1111/pbi.12657. Epub 2016 Dec 6.

10.

The developmental transcriptome atlas of the biofuel crop Camelina sativa.

Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG, Parkin IA.

Plant J. 2016 Dec;88(5):879-894. doi: 10.1111/tpj.13302.

11.

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.

Clarke WE, Higgins EE, Plieske J, Wieseke R, Sidebottom C, Khedikar Y, Batley J, Edwards D, Meng J, Li R, Lawley CT, Pauquet J, Laga B, Cheung W, Iniguez-Luy F, Dyrszka E, Rae S, Stich B, Snowdon RJ, Sharpe AG, Ganal MW, Parkin IA.

Theor Appl Genet. 2016 Oct;129(10):1887-99. doi: 10.1007/s00122-016-2746-7. Epub 2016 Jun 30.

12.

Microsatellite markers used for genome-wide association mapping of partial resistance to Sclerotinia sclerotiorum in a world collection of Brassica napus.

Gyawali S, Harrington M, Durkin J, Horner K, Parkin IA, Hegedus DD, Bekkaoui D, Buchwaldt L.

Mol Breed. 2016;36:72. Epub 2016 Jun 1.

13.

Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus.

Körber N, Bus A, Li J, Parkin IA, Wittkop B, Snowdon RJ, Stich B.

Front Plant Sci. 2016 Mar 31;7:386. doi: 10.3389/fpls.2016.00386. eCollection 2016.

14.

The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp.

Rolfe SA, Strelkov SE, Links MG, Clarke WE, Robinson SJ, Djavaheri M, Malinowski R, Haddadi P, Kagale S, Parkin IA, Taheri A, Borhan MH.

BMC Genomics. 2016 Mar 31;17:272. doi: 10.1186/s12864-016-2597-2.

15.

Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes.

Zou J, Hu D, Liu P, Raman H, Liu Z, Liu X, Parkin IA, Chalhoub B, Meng J.

BMC Genomics. 2016 Jan 5;17:18. doi: 10.1186/s12864-015-2343-1.

16.

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis.

Mason AS, Rousseau-Gueutin M, Morice J, Bayer PE, Besharat N, Cousin A, Pradhan A, Parkin IA, Chèvre AM, Batley J, Nelson MN.

Genetics. 2016 Feb;202(2):513-23. doi: 10.1534/genetics.115.183210. Epub 2015 Nov 27.

17.

Analysis of Genotyping-by-Sequencing (GBS) Data.

Kagale S, Koh C, Clarke WE, Bollina V, Parkin IA, Sharpe AG.

Methods Mol Biol. 2016;1374:269-84. doi: 10.1007/978-1-4939-3167-5_15.

PMID:
26519412
18.

Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.

He Z, Cheng F, Li Y, Wang X, Parkin IA, Chalhoub B, Liu S, Bancroft I.

Data Brief. 2015 Jul 2;4:357-62. doi: 10.1016/j.dib.2015.06.016. eCollection 2015 Sep.

19.

Seedling development traits in Brassica napus examined by gene expression analysis and association mapping.

Körber N, Bus A, Li J, Higgins J, Bancroft I, Higgins EE, Parkin IA, Salazar-Colqui B, Snowdon RJ, Stich B.

BMC Plant Biol. 2015 Jun 9;15:136. doi: 10.1186/s12870-015-0496-3.

20.

Single-nucleotide polymorphism identification and genotyping in Camelina sativa.

Singh R, Bollina V, Higgins EE, Clarke WE, Eynck C, Sidebottom C, Gugel R, Snowdon R, Parkin IA.

Mol Breed. 2015;35:35. Epub 2015 Jan 21.

21.

Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development.

Bus A, Körber N, Parkin IA, Samans B, Snowdon RJ, Li J, Stich B.

Front Plant Sci. 2014 Sep 30;5:485. doi: 10.3389/fpls.2014.00485. eCollection 2014.

22.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

23.

High-density single nucleotide polymorphism (SNP) array mapping in Brassica oleracea: identification of QTL associated with carotenoid variation in broccoli florets.

Brown AF, Yousef GG, Chebrolu KK, Byrd RW, Everhart KW, Thomas A, Reid RW, Parkin IA, Sharpe AG, Oliver R, Guzman I, Jackson EW.

Theor Appl Genet. 2014 Sep;127(9):2051-64. doi: 10.1007/s00122-014-2360-5. Epub 2014 Aug 14.

PMID:
25119868
24.

Polyploid evolution of the Brassicaceae during the Cenozoic era.

Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA.

Plant Cell. 2014 Jul;26(7):2777-91. doi: 10.1105/tpc.114.126391. Epub 2014 Jul 17.

25.

Genome-wide delineation of natural variation for pod shatter resistance in Brassica napus.

Raman H, Raman R, Kilian A, Detering F, Carling J, Coombes N, Diffey S, Kadkol G, Edwards D, McCully M, Ruperao P, Parkin IA, Batley J, Luckett DJ, Wratten N.

PLoS One. 2014 Jul 9;9(7):e101673. doi: 10.1371/journal.pone.0101673. eCollection 2014.

26.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

27.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

28.

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure.

Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA.

Nat Commun. 2014 Apr 23;5:3706. doi: 10.1038/ncomms4706.

29.

Comparison of five major trichome regulatory genes in Brassica villosa with orthologues within the Brassicaceae.

Nayidu NK, Kagale S, Taheri A, Withana-Gamage TS, Parkin IA, Sharpe AG, Gruber MY.

PLoS One. 2014 Apr 22;9(4):e95877. doi: 10.1371/journal.pone.0095877. eCollection 2014.

30.

Molecular cytogenetic identification of B genome chromosomes linked to blackleg disease resistance in Brassica napus × B. carinata interspecific hybrids.

Fredua-Agyeman R, Coriton O, Huteau V, Parkin IA, Chèvre AM, Rahman H.

Theor Appl Genet. 2014 Jun;127(6):1305-18. doi: 10.1007/s00122-014-2298-7. Epub 2014 Apr 1.

PMID:
24687759
31.

Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L.

Clarke WE, Parkin IA, Gajardo HA, Gerhardt DJ, Higgins E, Sidebottom C, Sharpe AG, Snowdon RJ, Federico ML, Iniguez-Luy FL.

PLoS One. 2013 Dec 3;8(12):e81992. doi: 10.1371/journal.pone.0081992. eCollection 2013.

32.

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.

Raman H, Raman R, Kilian A, Detering F, Long Y, Edwards D, Parkin IA, Sharpe AG, Nelson MN, Larkan N, Zou J, Meng J, Aslam MN, Batley J, Cowling WA, Lydiate D.

BMC Genomics. 2013 Apr 23;14:277. doi: 10.1186/1471-2164-14-277.

33.

Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea.

Navabi ZK, Huebert T, Sharpe AG, O'Neill CM, Bancroft I, Parkin IA.

BMC Genomics. 2013 Apr 15;14:250. doi: 10.1186/1471-2164-14-250.

34.

The Brassica napus blackleg resistance gene LepR3 encodes a receptor-like protein triggered by the Leptosphaeria maculans effector AVRLM1.

Larkan NJ, Lydiate DJ, Parkin IA, Nelson MN, Epp DJ, Cowling WA, Rimmer SR, Borhan MH.

New Phytol. 2013 Jan;197(2):595-605. doi: 10.1111/nph.12043. Epub 2012 Dec 3.

35.

Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network.

Wei S, Gruber MY, Yu B, Gao MJ, Khachatourians GG, Hegedus DD, Parkin IA, Hannoufa A.

BMC Plant Biol. 2012 Sep 18;12:169. doi: 10.1186/1471-2229-12-169.

36.

Arabidopsis cpSRP54 regulates carotenoid accumulation in Arabidopsis and Brassica napus.

Yu B, Gruber MY, Khachatourians GG, Zhou R, Epp DJ, Hegedus DD, Parkin IA, Welsch R, Hannoufa A.

J Exp Bot. 2012 Sep;63(14):5189-202. doi: 10.1093/jxb/ers179. Epub 2012 Jul 12.

37.

Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa.

Eynck C, Séguin-Swartz G, Clarke WE, Parkin IA.

Mol Plant Pathol. 2012 Oct;13(8):887-99. doi: 10.1111/j.1364-3703.2012.00798.x. Epub 2012 Apr 8.

PMID:
22487550
38.

Retention of triplicated phytoene synthase (PSY) genes in Brassica napus L. and its diploid progenitors during the evolution of the Brassiceae.

Cárdenas PD, Gajardo HA, Huebert T, Parkin IA, Iniguez-Luy FL, Federico ML.

Theor Appl Genet. 2012 May;124(7):1215-28. doi: 10.1007/s00122-011-1781-7. Epub 2012 Jan 13. Erratum in: Theor Appl Genet. 2012 Jun;125(1):199.

PMID:
22241480
39.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
40.

Capturing cold-stress-related sequence diversity from a wild relative of common bean (Phaseolus angustissimus).

Vijayan P, Parkin IA, Karcz SR, McGowan K, Vijayan K, Vandenberg A, Bett KE.

Genome. 2011 Aug;54(8):620-8. doi: 10.1139/G11-025. Epub 2011 Jul 28.

PMID:
21797793
41.

Integration of linkage maps for the Amphidiploid Brassica napus and comparative mapping with Arabidopsis and Brassica rapa.

Wang J, Lydiate DJ, Parkin IA, Falentin C, Delourme R, Carion PW, King GJ.

BMC Genomics. 2011 Feb 9;12:101. doi: 10.1186/1471-2164-12-101.

42.

The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome.

Nelson MN, Parkin IA, Lydiate DJ.

Genome. 2011 Jan;54(1):33-41. doi: 10.1139/G10-097.

PMID:
21217804
43.

Analysis of B-genome chromosome introgression in interspecific hybrids of Brassica napus × B. carinata.

Navabi ZK, Stead KE, Pires JC, Xiong Z, Sharpe AG, Parkin IA, Rahman MH, Good AG.

Genetics. 2011 Mar;187(3):659-73. doi: 10.1534/genetics.110.124925. Epub 2010 Dec 31.

44.

Towards unambiguous transcript mapping in the allotetraploid Brassica napus.

Parkin IA, Clarke WE, Sidebottom C, Zhang W, Robinson SJ, Links MG, Karcz S, Higgins EE, Fobert P, Sharpe AG.

Genome. 2010 Nov;53(11):929-38. doi: 10.1139/G10-053.

PMID:
21076508
45.

Sequence and structure of Brassica rapa chromosome A3.

Mun JH, Kwon SJ, Seol YJ, Kim JA, Jin M, Kim JS, Lim MH, Lee SI, Hong JK, Park TH, Lee SC, Kim BJ, Seo MS, Baek S, Lee MJ, Shin JY, Hahn JH, Hwang YJ, Lim KB, Park JY, Lee J, Yang TJ, Yu HJ, Choi IY, Choi BS, Choi SR, Ramchiary N, Lim YP, Fraser F, Drou N, Soumpourou E, Trick M, Bancroft I, Sharpe AG, Parkin IA, Batley J, Edwards D, Park BS.

Genome Biol. 2010;11(9):R94. doi: 10.1186/gb-2010-11-9-r94. Epub 2010 Sep 27.

46.

Introgression of B-genome chromosomes in a doubled haploid population of Brassica napus x B. carinata.

Navabi ZK, Parkin IA, Pires JC, Xiong Z, Thiagarajah MR, Good AG, Rahman MH.

Genome. 2010 Aug;53(8):619-29. doi: 10.1139/g10-039.

PMID:
20725149
47.

An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches.

Robinson SJ, Tang LH, Mooney BA, McKay SJ, Clarke WE, Links MG, Karcz S, Regan S, Wu YY, Gruber MY, Cui D, Yu M, Parkin IA.

BMC Plant Biol. 2009 Jul 31;9:101. doi: 10.1186/1471-2229-9-101.

48.

Bridging the gene-to-function knowledge gap through functional genomics.

Robinson SJ, Parkin IA.

Methods Mol Biol. 2009;513:153-73. doi: 10.1007/978-1-59745-427-8_9.

PMID:
19347643
49.

Forward and reverse genetics of rapid-cycling Brassica oleracea.

Himelblau E, Gilchrist EJ, Buono K, Bizzell C, Mentzer L, Vogelzang R, Osborn T, Amasino RM, Parkin IA, Haughn GW.

Theor Appl Genet. 2009 Mar;118(5):953-61. doi: 10.1007/s00122-008-0952-7. Epub 2009 Jan 9.

PMID:
19132334
50.

Inheritance of Race-Specific Resistance to Xanthomonas campestris pv. campestris in Brassica Genomes.

Vicente JG, Taylor JD, Sharpe AG, Parkin IA, Lydiate DJ, King GJ.

Phytopathology. 2002 Oct;92(10):1134-41. doi: 10.1094/PHYTO.2002.92.10.1134.

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