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Items: 43

1.

Is virtual clinic follow-up of hip and knee joint replacement acceptable to patients and clinicians? A sequential mixed methods evaluation.

Parkes RJ, Palmer J, Wingham J, Williams DH.

BMJ Open Qual. 2019 Mar 1;8(1):e000502. doi: 10.1136/bmjoq-2018-000502. eCollection 2019.

2.

Rock-crushing derived hydrogen directly supports a methanogenic community: significance for the deep biosphere.

Parkes RJ, Berlendis S, Roussel EG, Bahruji H, Webster G, Oldroyd A, Weightman AJ, Bowker M, Davies PR, Sass H.

Environ Microbiol Rep. 2019 Apr;11(2):165-172. doi: 10.1111/1758-2229.12723. Epub 2018 Dec 26.

PMID:
30507067
3.

Non-operative management, supported by self-monitoring using web-based patient reported outcome measures (PROMs), in knee osteoarthritis.

Webb E, Parkes RJ, Gough AT, Williams DH.

BMJ Case Rep. 2018 Sep 1;2018. pii: bcr-2017-223560. doi: 10.1136/bcr-2017-223560. Erratum in: BMJ Case Rep. 2018 Sep 28;2018:.

PMID:
30173126
4.

Global Carbon Cycling on a Heterogeneous Seafloor.

Snelgrove PVR, Soetaert K, Solan M, Thrush S, Wei CL, Danovaro R, Fulweiler RW, Kitazato H, Ingole B, Norkko A, Parkes RJ, Volkenborn N.

Trends Ecol Evol. 2018 Feb;33(2):96-105. doi: 10.1016/j.tree.2017.11.004. Epub 2017 Dec 14. Review.

5.

A systematic review of cost-effectiveness, comparing traction to intramedullary nailing of femoral shaft fractures, in the less economically developed context.

Parkes RJ, Parkes G, James K.

BMJ Glob Health. 2017 Sep 25;2(3):e000313. doi: 10.1136/bmjgh-2017-000313. eCollection 2017.

6.

Complex coupled metabolic and prokaryotic community responses to increasing temperatures in anaerobic marine sediments: critical temperatures and substrate changes.

Roussel EG, Cragg BA, Webster G, Sass H, Tang X, Williams AS, Gorra R, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2015 Aug;91(8):fiv084. doi: 10.1093/femsec/fiv084. Epub 2015 Jul 22.

7.

Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics.

Nobu MK, Dodsworth JA, Murugapiran SK, Rinke C, Gies EA, Webster G, Schwientek P, Kille P, Parkes RJ, Sass H, Jørgensen BB, Weightman AJ, Liu WT, Hallam SJ, Tsiamis G, Woyke T, Hedlund BP.

ISME J. 2016 Feb;10(2):273-86. doi: 10.1038/ismej.2015.97. Epub 2015 Jun 19.

8.

Evidence of active methanogen communities in shallow sediments of the sonora margin cold seeps.

Vigneron A, L'Haridon S, Godfroy A, Roussel EG, Cragg BA, Parkes RJ, Toffin L.

Appl Environ Microbiol. 2015 May 15;81(10):3451-9. doi: 10.1128/AEM.00147-15. Epub 2015 Mar 13.

9.

Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments.

Webster G, O'Sullivan LA, Meng Y, Williams AS, Sass AM, Watkins AJ, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2015 Feb;91(2):1-18. doi: 10.1093/femsec/fiu025. Epub 2014 Dec 15.

10.

Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure.

O'Sullivan LA, Roussel EG, Weightman AJ, Webster G, Hubert CR, Bell E, Head I, Sass H, Parkes RJ.

ISME J. 2015 Mar 17;9(4):922-33. doi: 10.1038/ismej.2014.190.

11.

Bacterial and Archaeal direct counts: a faster method of enumeration, for enrichment cultures and aqueous environmental samples.

Cragg BA, Parkes RJ.

J Microbiol Methods. 2014 Mar;98:35-40. doi: 10.1016/j.mimet.2013.12.006. Epub 2013 Dec 17.

PMID:
24361191
12.

Glycine betaine as a direct substrate for methanogens (Methanococcoides spp.).

Watkins AJ, Roussel EG, Parkes RJ, Sass H.

Appl Environ Microbiol. 2014 Jan;80(1):289-93. doi: 10.1128/AEM.03076-13. Epub 2013 Oct 25.

13.

Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient.

O'Sullivan LA, Sass AM, Webster G, Fry JC, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2013 Jul;85(1):143-57. doi: 10.1111/1574-6941.12106. Epub 2013 Apr 5.

14.

Choline and N,N-dimethylethanolamine as direct substrates for methanogens.

Watkins AJ, Roussel EG, Webster G, Parkes RJ, Sass H.

Appl Environ Microbiol. 2012 Dec;78(23):8298-303. doi: 10.1128/AEM.01941-12. Epub 2012 Sep 21.

15.

Anaerobic oxidation of methane in hypersaline cold seep sediments.

Maignien L, Parkes RJ, Cragg B, Niemann H, Knittel K, Coulon S, Akhmetzhanov A, Boon N.

FEMS Microbiol Ecol. 2013 Jan;83(1):214-31. doi: 10.1111/j.1574-6941.2012.01466.x. Epub 2012 Oct 17.

16.

Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions.

Webster G, Sass H, Cragg BA, Gorra R, Knab NJ, Green CJ, Mathes F, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2011 Aug;77(2):248-63. doi: 10.1111/j.1574-6941.2011.01109.x. Epub 2011 May 9.

17.

Methanogenic diversity and activity in hypersaline sediments of the centre of the Napoli mud volcano, Eastern Mediterranean Sea.

Lazar CS, Parkes RJ, Cragg BA, L'Haridon S, Toffin L.

Environ Microbiol. 2011 Aug;13(8):2078-91. doi: 10.1111/j.1462-2920.2011.02425.x. Epub 2011 Mar 7.

PMID:
21382146
18.

Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing.

Webster G, Rinna J, Roussel EG, Fry JC, Weightman AJ, Parkes RJ.

FEMS Microbiol Ecol. 2010 May;72(2):179-97. doi: 10.1111/j.1574-6941.2010.00848.x. Epub 2010 Feb 15.

19.

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG).

Parkes RJ, Sellek G, Webster G, Martin D, Anders E, Weightman AJ, Sass H.

Environ Microbiol. 2009 Dec;11(12):3140-53. doi: 10.1111/j.1462-2920.2009.02018.x. Epub 2009 Aug 19.

20.

Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307).

Webster G, Blazejak A, Cragg BA, Schippers A, Sass H, Rinna J, Tang X, Mathes F, Ferdelman TG, Fry JC, Weightman AJ, Parkes RJ.

Environ Microbiol. 2009 Jan;11(1):239-57. doi: 10.1111/j.1462-2920.2008.01759.x. Epub 2008 Sep 23.

21.

Modified linker-PCR primers facilitate complete sequencing of DGGE DNA fragments.

O'Sullivan LA, Webster G, Fry JC, Parkes RJ, Weightman AJ.

J Microbiol Methods. 2008 Dec;75(3):579-81. doi: 10.1016/j.mimet.2008.08.006. Epub 2008 Aug 26.

PMID:
18789360
22.

Prokaryotic biodiversity and activity in the deep subseafloor biosphere.

Fry JC, Parkes RJ, Cragg BA, Weightman AJ, Webster G.

FEMS Microbiol Ecol. 2008 Nov;66(2):181-96. doi: 10.1111/j.1574-6941.2008.00566.x. Epub 2008 Aug 20. Review.

23.

Extending the sub-sea-floor biosphere.

Roussel EG, Bonavita MA, Querellou J, Cragg BA, Webster G, Prieur D, Parkes RJ.

Science. 2008 May 23;320(5879):1046. doi: 10.1126/science.1154545.

24.

Distribution of candidate division JS1 and other Bacteria in tidal sediments of the German Wadden Sea using targeted 16S rRNA gene PCR-DGGE.

Webster G, Yarram L, Freese E, Köster J, Sass H, Parkes RJ, Weightman AJ.

FEMS Microbiol Ecol. 2007 Oct;62(1):78-89. Epub 2007 Aug 10.

25.

Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark).

Parkes RJ, Cragg BA, Banning N, Brock F, Webster G, Fry JC, Hornibrook E, Pancost RD, Kelly S, Knab N, Jørgensen BB, Rinna J, Weightman AJ.

Environ Microbiol. 2007 May;9(5):1146-61.

PMID:
17472631
27.

Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.

Webster G, Parkes RJ, Cragg BA, Newberry CJ, Weightman AJ, Fry JC.

FEMS Microbiol Ecol. 2006 Oct;58(1):65-85.

28.

A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries.

Webster G, Watt LC, Rinna J, Fry JC, Evershed RP, Parkes RJ, Weightman AJ.

Environ Microbiol. 2006 Sep;8(9):1575-89.

PMID:
16913918
29.

Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.

Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jørgensen BB, Aiello IW, Fry JC.

Nature. 2005 Jul 21;436(7049):390-4.

30.

Investigation of the methanogen population structure and activity in a brackish lake sediment.

Banning N, Brock F, Fry JC, Parkes RJ, Hornibrook ER, Weightman AJ.

Environ Microbiol. 2005 Jul;7(7):947-60.

PMID:
15946291
31.

Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria.

Schippers A, Neretin LN, Kallmeyer J, Ferdelman TG, Cragg BA, Parkes RJ, Jørgensen BB.

Nature. 2005 Feb 24;433(7028):861-4.

32.

Distributions of microbial activities in deep subseafloor sediments.

D'Hondt S, Jørgensen BB, Miller DJ, Batzke A, Blake R, Cragg BA, Cypionka H, Dickens GR, Ferdelman T, Hinrichs KU, Holm NG, Mitterer R, Spivack A, Wang G, Bekins B, Engelen B, Ford K, Gettemy G, Rutherford SD, Sass H, Skilbeck CG, Aiello IW, Guèrin G, House CH, Inagaki F, Meister P, Naehr T, Niitsuma S, Parkes RJ, Schippers A, Smith DC, Teske A, Wiegel J, Padilla CN, Acosta JL.

Science. 2004 Dec 24;306(5705):2216-21.

33.
34.

Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190.

Newberry CJ, Webster G, Cragg BA, Parkes RJ, Weightman AJ, Fry JC.

Environ Microbiol. 2004 Mar;6(3):274-87.

PMID:
14871211
35.

Geomicrobiology of deep, low organic carbon sediments in the Woodlark Basin, Pacific Ocean.

Wellsbury P, Mather I, Parkes RJ.

FEMS Microbiol Ecol. 2002 Oct 1;42(1):59-70. doi: 10.1111/j.1574-6941.2002.tb00995.x.

36.
37.

Adhesion molecules and gene transfer.

Parkes RJ, Hart SL.

Adv Drug Deliv Rev. 2000 Nov 15;44(2-3):135-52. Review.

PMID:
11072111
38.

A case of bacterial immortality?

Parkes RJ.

Nature. 2000 Oct 19;407(6806):844-5. No abstract available.

PMID:
11057647
39.

Long-chain alkenes of the haptophytes Isochrysis galbana and Emiliania huxleyi.

Rieley G, Teece MA, Peakman TM, Raven AM, Greene KJ, Clarke TP, Murray M, Leftley JW, Campbell C, Harris RP, Parkes RJ, Maxwell JR.

Lipids. 1998 Jun;33(6):617-25. Erratum in: Lipids 1998 Sep;33(9):949. Campbell CN [corrected to Campbell C].

PMID:
9655378
40.

Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea.

Bale SJ, Goodman K, Rochelle PA, Marchesi JR, Fry JC, Weightman AJ, Parkes RJ.

Int J Syst Bacteriol. 1997 Apr;47(2):515-21.

PMID:
9103642
42.

DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities.

Rochelle PA, Fry JC, Parkes RJ, Weightman AJ.

FEMS Microbiol Lett. 1992 Dec 15;100(1-3):59-65.

PMID:
1282488
43.

A novel method for the transport and long-term storage of cultures and samples in an anaerobic atmosphere.

Cragg BA, Bale SJ, Parkes RJ.

Lett Appl Microbiol. 1992 Oct;15(4):125-128. doi: 10.1111/j.1472-765X.1992.tb00743.x.

PMID:
29389029

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