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Whole-Genome Sequencing-Based Characterization of 100 Listeria monocytogenes Isolates Collected from Food Processing Environments over a Four-Year Period.

Hurley D, Luque-Sastre L, Parker CT, Huynh S, Eshwar AK, Nguyen SV, Andrews N, Moura A, Fox EM, Jordan K, Lehner A, Stephan R, Fanning S.

mSphere. 2019 Aug 7;4(4). pii: e00252-19. doi: 10.1128/mSphere.00252-19.


The Campylobacter jejuni helical to coccoid transition involves changes to peptidoglycan and the ability to elicit an immune response.

Frirdich E, Biboy J, Pryjma M, Lee J, Huynh S, Parker CT, Girardin SE, Vollmer W, Gaynor EC.

Mol Microbiol. 2019 Jul;112(1):280-301. doi: 10.1111/mmi.14269. Epub 2019 May 20.


Campylobacter jejuni Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells.

Negretti NM, Clair G, Talukdar PK, Gourley CR, Huynh S, Adkins JN, Parker CT, Corneau CM, Konkel ME.

Front Microbiol. 2019 Apr 11;10:755. doi: 10.3389/fmicb.2019.00755. eCollection 2019.


Complete Genome Sequences of Three Shiga Toxin-Producing Escherichia coli O111:H8 Strains Exhibiting an Aggregation Phenotype.

Parker CT, Huynh S, Bono JL, Miller WG, Cooley MB, Brandl MT.

Microbiol Resour Announc. 2019 Jan 3;8(1). pii: e01335-18. doi: 10.1128/MRA.01335-18. eCollection 2019 Jan.


Complete Genome Sequence of Acinetobacter radioresistens Strain LH6, a Multidrug-Resistant Bacteriophage-Propagating Strain.

Crippen CS, Huynh S, Miller WG, Parker CT, Szymanski CM.

Microbiol Resour Announc. 2018 Aug 9;7(5). pii: e00929-18. doi: 10.1128/MRA.00929-18. eCollection 2018 Aug.


Complete Genome Sequence of Lactococcus lactis subsp. lactis Strain 14B4, Which Inhibits the Growth of Salmonella enterica Serotype Poona In Vitro.

Tran TD, Huynh S, Parker CT, Han R, Hnasko R, Gorski L, McGarvey JA.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01364-18. doi: 10.1128/MRA.01364-18. eCollection 2018 Nov.


Complete Genome Sequence of the Arcobacter marinus Type Strain JCM 15502.

Miller WG, Yee E, Huynh S, Parker CT.

Microbiol Resour Announc. 2018 Oct 25;7(16). pii: e01269-18. doi: 10.1128/MRA.01269-18. eCollection 2018 Oct.


Draft Genome Sequences of Nine Campylobacter hyointestinalis subsp. lawsonii Strains.

Bian X, Huynh S, Chapman MH, Szymanski CM, Parker CT, Miller WG.

Microbiol Resour Announc. 2018 Sep 13;7(10). pii: e01016-18. doi: 10.1128/MRA.01016-18. eCollection 2018 Sep.


Genome Sequences of Eight Shiga Toxin-Producing Escherichia coli Strains Isolated from a Produce-Growing Region in California.

Parker CT, Cooper KK, Huynh S, Smith TP, Bono JL, Cooley M.

Microbiol Resour Announc. 2018 Jul 12;7(1). pii: e00807-18. doi: 10.1128/MRA.00807-18. eCollection 2018 Jul.


Multi-drug resistant Escherichia coli in diarrhoeagenic foals: Pulsotyping, phylotyping, serotyping, antibiotic resistance and virulence profiling.

Kennedy CA, Walsh C, Karczmarczyk M, O'Brien S, Akasheh N, Quirke M, Farrell-Ward S, Buckley T, Fogherty U, Kavanagh K, Parker CT, Sweeney T, Fanning S.

Vet Microbiol. 2018 Sep;223:144-152. doi: 10.1016/j.vetmic.2018.08.009. Epub 2018 Aug 7.


Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes In Vitro.

Tran TD, Huynh S, Parker CT, Hnasko R, Gorski L, McGarvey JA.

Genome Announc. 2018 Jun 21;6(25). pii: e00579-18. doi: 10.1128/genomeA.00579-18.


Communicating Climate Change: Lessons Learned from a Researcher-Museum Collaboration.

Parker CT, Cockerham D, Foss AW.

J Microbiol Biol Educ. 2018 Mar 30;19(1). pii: 19.1.37. doi: 10.1128/jmbe.v19i1.1499. eCollection 2018.


Catabolite repression in Campylobacter jejuni correlates with intracellular succinate levels.

van der Stel AX, van de Lest CHA, Huynh S, Parker CT, van Putten JPM, Wösten MMSM.

Environ Microbiol. 2018 Apr;20(4):1374-1388. doi: 10.1111/1462-2920.14042. Epub 2018 Feb 2.


Complete Genomic Sequences of Two Salmonella enterica subsp. enterica Serogroup C2 (O:6,8) Strains from Central California.

Gorski L, Huynh S, Cooper KK, Parker CT.

Genome Announc. 2017 Nov 16;5(46). pii: e01234-17. doi: 10.1128/genomeA.01234-17.


Comparative Genomic Analysis Identifies a Campylobacter Clade Deficient in Selenium Metabolism.

Miller WG, Yee E, Lopes BS, Chapman MH, Huynh S, Bono JL, Parker CT, Strachan NJC, Forbes KJ.

Genome Biol Evol. 2017 Jul 1;9(7):1843-1858. doi: 10.1093/gbe/evx093.


Generation of the membrane potential and its impact on the motility, ATP production and growth in Campylobacter jejuni.

van der Stel AX, Boogerd FC, Huynh S, Parker CT, van Dijk L, van Putten JPM, Wösten MMSM.

Mol Microbiol. 2017 Aug;105(4):637-651. doi: 10.1111/mmi.13723. Epub 2017 Jun 22.


Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

Pascoe B, Méric G, Yahara K, Wimalarathna H, Murray S, Hitchings MD, Sproston EL, Carrillo CD, Taboada EN, Cooper KK, Huynh S, Cody AJ, Jolley KA, Maiden MCJ, McCarthy ND, Didelot X, Parker CT, Sheppard SK.

Mol Ecol. 2017 Sep;26(17):4497-4508. doi: 10.1111/mec.14176. Epub 2017 Jun 19.


Microbiota-Derived Short-Chain Fatty Acids Modulate Expression of Campylobacter jejuni Determinants Required for Commensalism and Virulence.

Luethy PM, Huynh S, Ribardo DA, Winter SE, Parker CT, Hendrixson DR.

MBio. 2017 May 9;8(3). pii: e00407-17. doi: 10.1128/mBio.00407-17.


Genomic Sequence of Campylobacter jejuni subsp. jejuni HS:19 Penner Serotype Reference Strain RM3420.

Parker CT, Huynh S, Heikema AP.

Genome Announc. 2017 Feb 23;5(8). pii: e01701-16. doi: 10.1128/genomeA.01701-16.


Genetic and Mechanistic Analyses of the Periplasmic Domain of the Enterohemorrhagic Escherichia coli QseC Histidine Sensor Kinase.

Parker CT, Russell R, Njoroge JW, Jimenez AG, Taussig R, Sperandio V.

J Bacteriol. 2017 Mar 28;199(8). pii: e00861-16. doi: 10.1128/JB.00861-16. Print 2017 Apr 15.


Complete Annotated Genome Sequences of Three Campylobacter jejuni Strains Isolated from Naturally Colonized Farm-Raised Chickens.

Taveirne ME, Dunham DT, Perault A, Beauchamp JM, Huynh S, Parker CT, DiRita VJ.

Genome Announc. 2017 Jan 26;5(4). pii: e01407-16. doi: 10.1128/genomeA.01407-16.


The Majority of Genotypes of the Virulence Gene inlA Are Intact among Natural Watershed Isolates of Listeria monocytogenes from the Central California Coast.

Gorski L, Parker CT, Liang AS, Walker S, Romanolo KF.

PLoS One. 2016 Dec 1;11(12):e0167566. doi: 10.1371/journal.pone.0167566. eCollection 2016.


Complete Genomic Sequence of Campylobacter jejuni subsp. jejuni HS:19 Strain RM1285 Isolated from Packaged Chicken.

Parker CT, Huynh S, Heikema AP.

Genome Announc. 2016 Oct 6;4(5). pii: e01100-16. doi: 10.1128/genomeA.01100-16.


Complete Genome Sequence of Campylobacter iguaniorum Strain RM11343, Isolated from an Alpaca.

Miller WG, Yee E, Huynh S, Chapman MH, Parker CT.

Genome Announc. 2016 Jun 30;4(3). pii: e00646-16. doi: 10.1128/genomeA.00646-16.


Laboratory-based clinical audit as a tool for continual improvement: an example from CSF chemistry turnaround time audit in a South-African teaching hospital.

Imoh LC, Mutale M, Parker CT, Erasmus RT, Zemlin AE.

Biochem Med (Zagreb). 2016;26(2):194-201. doi: 10.11613/BM.2016.021.


Biological Variation of Plasma and Urinary Markers of Acute Kidney Injury in Patients with Chronic Kidney Disease.

Carter JL, Parker CT, Stevens PE, Eaglestone G, Knight S, Farmer CK, Lamb EJ.

Clin Chem. 2016 Jun;62(6):876-83. doi: 10.1373/clinchem.2015.250993. Epub 2016 Mar 29.


Correction: Updated Campylobacter jejuni Capsule PCR Multiplex Typing System and Its Application to Clinical Isolates from South and Southeast Asia.

Poly F, Serichantalergs O, Kuroiwa J, Pootong P, Mason C, Guerry P, Parker CT.

PLoS One. 2016 Mar 7;11(3):e0151410. doi: 10.1371/journal.pone.0151410. eCollection 2016. No abstract available.


Updated Campylobacter jejuni Capsule PCR Multiplex Typing System and Its Application to Clinical Isolates from South and Southeast Asia.

Poly F, Serichantalergs O, Kuroiwa J, Pootong P, Mason C, Guerry P, Parker CT.

PLoS One. 2015 Dec 2;10(12):e0144349. doi: 10.1371/journal.pone.0144349. eCollection 2015. Erratum in: PLoS One. 2016;11(3):e0151410.


Complete Genome Sequences of Two Outbreak Strains of Salmonella enterica subsp. enterica Serovar Thompson Associated with Cilantro.

Parker CT, Huynh S, Gorski L, Cooper KK, Miller WG.

Genome Announc. 2015 Nov 19;3(6). pii: e01365-15. doi: 10.1128/genomeA.01365-15.


Complete Genome Sequences of Campylobacter jejuni Strains RM3196 (233.94) and RM3197 (308.95) Isolated from Patients with Guillain-Barré Syndrome.

Parker CT, Huynh S, Heikema AP, Cooper KK, Miller WG.

Genome Announc. 2015 Nov 5;3(6). pii: e01312-15. doi: 10.1128/genomeA.01312-15.


High-Frequency Variation of Purine Biosynthesis Genes Is a Mechanism of Success in Campylobacter jejuni.

Cameron A, Huynh S, Scott NE, Frirdich E, Apel D, Foster LJ, Parker CT, Gaynor EC.

MBio. 2015 Sep 29;6(5):e00612-15. doi: 10.1128/mBio.00612-15.


Campylobacter jejuni capsular genotypes are related to Guillain-Barré syndrome.

Heikema AP, Islam Z, Horst-Kreft D, Huizinga R, Jacobs BC, Wagenaar JA, Poly F, Guerry P, van Belkum A, Parker CT, Endtz HP.

Clin Microbiol Infect. 2015 Sep;21(9):852.e1-9. doi: 10.1016/j.cmi.2015.05.031. Epub 2015 Jun 9.


Analysis of the activity and regulon of the two-component regulatory system composed by Cjj81176_1484 and Cjj81176_1483 of Campylobacter jejuni.

Luethy PM, Huynh S, Parker CT, Hendrixson DR.

J Bacteriol. 2015 May;197(9):1592-605. doi: 10.1128/JB.02564-14. Epub 2015 Feb 17.


The Campylobacter jejuni CprRS two-component regulatory system regulates aspects of the cell envelope.

Svensson SL, Huynh S, Parker CT, Gaynor EC.

Mol Microbiol. 2015 Apr;96(1):189-209. doi: 10.1111/mmi.12927. Epub 2015 Feb 18. Erratum in: Mol Microbiol. 2015 Dec;98(5):993. Hyunh, Steven [Corrected to Huynh, Steven].


Comparative genomics of the Campylobacter lari group.

Miller WG, Yee E, Chapman MH, Smith TP, Bono JL, Huynh S, Parker CT, Vandamme P, Luong K, Korlach J.

Genome Biol Evol. 2014 Nov 8;6(12):3252-66. doi: 10.1093/gbe/evu249.


Complete Genome Sequence and Annotation of a Campylobacter jejuni Strain, MTVDSCj20, Isolated from a Naturally Colonized Farm-Raised Chicken.

Taveirne ME, Dunham DT, Miller WG, Parker CT, Huynh S, DiRita VJ.

Genome Announc. 2014 Aug 21;2(4). pii: e00852-14. doi: 10.1128/genomeA.00852-14.


Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.


Natural rpoS mutations contribute to population heterogeneity in Escherichia coli O157:H7 strains linked to the 2006 US spinach-associated outbreak.

Carter MQ, Louie JW, Huynh S, Parker CT.

Food Microbiol. 2014 Dec;44:108-18. doi: 10.1016/ Epub 2014 Jun 9.


Complete Genome Sequences of Two Escherichia coli O145:H28 Outbreak Strains of Food Origin.

Cooper KK, Mandrell RE, Louie JW, Korlach J, Clark TA, Parker CT, Huynh S, Chain PS, Ahmed S, Carter MQ.

Genome Announc. 2014 May 22;2(3). pii: e00482-14. doi: 10.1128/genomeA.00482-14.


The Campylobacter jejuni RacRS system regulates fumarate utilization in a low oxygen environment.

van der Stel AX, van Mourik A, Heijmen-van Dijk L, Parker CT, Kelly DJ, van de Lest CH, van Putten JP, Wösten MM.

Environ Microbiol. 2015 Apr;17(4):1049-64. doi: 10.1111/1462-2920.12476. Epub 2014 May 7.


Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7.

Cooper KK, Mandrell RE, Louie JW, Korlach J, Clark TA, Parker CT, Huynh S, Chain PS, Ahmed S, Carter MQ.

BMC Genomics. 2014 Jan 10;15:17. doi: 10.1186/1471-2164-15-17.


Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Thompson Strain RM6836.

Parker CT, Gorski L, Huynh S.

Genome Announc. 2013 Nov 14;1(6). pii: e00900-13. doi: 10.1128/genomeA.00900-13.


Virulence and stress-related periplasmic protein (VisP) in bacterial/host associations.

Moreira CG, Herrera CM, Needham BD, Parker CT, Libby SJ, Fang FC, Trent MS, Sperandio V.

Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):1470-5. doi: 10.1073/pnas.1215416110. Epub 2013 Jan 9.


The salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine.

Goudeau DM, Parker CT, Zhou Y, Sela S, Kroupitski Y, Brandl MT.

Appl Environ Microbiol. 2013 Jan;79(1):250-62. doi: 10.1128/AEM.02290-12. Epub 2012 Oct 26.


Regulation of energy metabolism by the extracytoplasmic function (ECF) σ factors of Arcobacter butzleri.

Martinez-Malaxetxebarria I, Muts R, van Dijk L, Parker CT, Miller WG, Huynh S, Gaastra W, van Putten JP, Fernandez-Astorga A, Wösten MM.

PLoS One. 2012;7(9):e44796. doi: 10.1371/journal.pone.0044796. Epub 2012 Sep 18.


Hyperosmotic stress response of Campylobacter jejuni.

Cameron A, Frirdich E, Huynh S, Parker CT, Gaynor EC.

J Bacteriol. 2012 Nov;194(22):6116-30. doi: 10.1128/JB.01409-12. Epub 2012 Sep 7.


RcsB contributes to the distinct stress fitness among Escherichia coli O157:H7 curli variants of the 1993 hamburger-associated outbreak strains.

Carter MQ, Parker CT, Louie JW, Huynh S, Fagerquist CK, Mandrell RE.

Appl Environ Microbiol. 2012 Nov;78(21):7706-19. doi: 10.1128/AEM.02157-12. Epub 2012 Aug 24.


FdhTU-modulated formate dehydrogenase expression and electron donor availability enhance recovery of Campylobacter jejuni following host cell infection.

Pryjma M, Apel D, Huynh S, Parker CT, Gaynor EC.

J Bacteriol. 2012 Aug;194(15):3803-13. doi: 10.1128/JB.06665-11. Epub 2012 May 25.

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