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Host and Symbiont Genetic Determinants of Nutritional Phenotype in a Natural Population of the Pea Aphid.

Chung SH, Parker BJ, Blow F, Brisson JA, Douglas AE.

Mol Ecol. 2020 Jan 16. doi: 10.1111/mec.15355. [Epub ahead of print]


Establishing post-outbreak freedom from African horse sickness virus in South Africa's surveillance zone.

Grewar JD, Sergeant ES, Weyer CT, van Helden LS, Parker BJ, Anthony T, Thompson PN.

Transbound Emerg Dis. 2019 Nov;66(6):2288-2296. doi: 10.1111/tbed.13279. Epub 2019 Jul 7.


A Laterally Transferred Viral Gene Modifies Aphid Wing Plasticity.

Parker BJ, Brisson JA.

Curr Biol. 2019 Jun 17;29(12):2098-2103.e5. doi: 10.1016/j.cub.2019.05.041. Epub 2019 Jun 6.


A multicenter audit of the use of bronchoscopy during open and thoracoscopic repair of esophageal atresia with tracheoesophageal fistula.

Ahmad NS, Dobby N, Walker E, Sogbodjor LA, Kelgeri N, Pickard A, Burrows TDR, Nicholson KE, Green A, Shepherd L, Thornley H, Wolfe Barry JA, Parker BJ, Childs SL, King RG, Mele S, Krishnan P.

Paediatr Anaesth. 2019 Jun;29(6):640-647. doi: 10.1111/pan.13621. Epub 2019 Jun 12.


The influence of symbiotic bacteria on reproductive strategies and wing polyphenism in pea aphids responding to stress.

Reyes ML, Laughton AM, Parker BJ, Wichmann H, Fan M, Sok D, Hrček J, Acevedo T, Gerardo NM.

J Anim Ecol. 2019 Apr;88(4):601-611. doi: 10.1111/1365-2656.12942. Epub 2019 Jan 31.


A field investigation of an African horse sickness outbreak in the controlled area of South Africa in 2016.

Grewar JD, Weyer CT, Venter GJ, van Helden LS, Burger P, Guthrie AJ, Coetzee P, Labuschagne K, Bührmann G, Parker BJ, Thompson PN.

Transbound Emerg Dis. 2019 Mar;66(2):743-751. doi: 10.1111/tbed.13077. Epub 2018 Dec 3.


QRISK3 improves detection of cardiovascular disease risk in patients with systemic lupus erythematosus.

Edwards N, Langford-Smith AWW, Parker BJ, Bruce IN, Reynolds JA, Alexander MY, McCarthy EM, Wilkinson FL.

Lupus Sci Med. 2018 Aug 13;5(1):e000272. doi: 10.1136/lupus-2018-000272. eCollection 2018.


Hosts do not simply outsource pathogen resistance to protective symbionts.

Hrček J, Parker BJ, McLean AHC, Simon JC, Mann CM, Godfray HCJ.

Evolution. 2018 May 28. doi: 10.1111/evo.13512. [Epub ahead of print]


Extending Circulating Tumor DNA Analysis to Ultralow Abundance Mutations: Techniques and Challenges.

Rodda AE, Parker BJ, Spencer A, Corrie SR.

ACS Sens. 2018 Mar 23;3(3):540-560. doi: 10.1021/acssensors.7b00953. Epub 2018 Feb 23. Review.


Test proxy carbon prices as decision-making tools.

Barron AR, Parker BJ.

Nature. 2018 Jan 25;553(7689):405. doi: 10.1038/d41586-018-01078-2. No abstract available.


Treatment-Refractory Sternocostoclavicular Hyperostosis.

Yachoui R, Kreidy M, Parker BJ.

Clin Med Res. 2017 Jun;15(1-2):37-40. doi: 10.3121/cmr.2017.1352.


Establishment and maintenance of aphid endosymbionts after horizontal transfer is dependent on host genotype.

Parker BJ, McLean AHC, Hrček J, Gerardo NM, Godfray HCJ.

Biol Lett. 2017 May;13(5). pii: 20170016. doi: 10.1098/rsbl.2017.0016.


Consequences of symbiont co-infections for insect host phenotypes.

McLean AHC, Parker BJ, Hrček J, Kavanagh JC, Wellham PAD, Godfray HCJ.

J Anim Ecol. 2018 Mar;87(2):478-488. doi: 10.1111/1365-2656.12705. Epub 2017 Jul 3.


Key determinants of selective binding and activation by the monocyte chemoattractant proteins at the chemokine receptor CCR2.

Huma ZE, Sanchez J, Lim HD, Bridgford JL, Huang C, Parker BJ, Pazhamalil JG, Porebski BT, Pfleger KDG, Lane JR, Canals M, Stone MJ.

Sci Signal. 2017 May 23;10(480). pii: eaai8529. doi: 10.1126/scisignal.aai8529.


Statistical Methods for Transcriptome-Wide Analysis of RNA Methylation by Bisulfite Sequencing.

Parker BJ.

Methods Mol Biol. 2017;1562:155-167. doi: 10.1007/978-1-4939-6807-7_11.


Genotype specificity among hosts, pathogens, and beneficial microbes influences the strength of symbiont-mediated protection.

Parker BJ, Hrček J, McLean AHC, Godfray HCJ.

Evolution. 2017 May;71(5):1222-1231. doi: 10.1111/evo.13216. Epub 2017 Mar 24.


A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A.B.

Soboleva TA, Parker BJ, Nekrasov M, Hart-Smith G, Tay YJ, Tng WQ, Wilkins M, Ryan D, Tremethick DJ.

PLoS Genet. 2017 Feb 24;13(2):e1006633. doi: 10.1371/journal.pgen.1006633. eCollection 2017 Feb.


Life-history strategy determines constraints on immune function.

Parker BJ, Barribeau SM, Laughton AM, Griffin LH, Gerardo NM.

J Anim Ecol. 2017 May;86(3):473-483. doi: 10.1111/1365-2656.12657. Epub 2017 Apr 3.


Insect symbionts in food webs.

McLean AH, Parker BJ, Hrček J, Henry LM, Godfray HC.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150325. doi: 10.1098/rstb.2015.0325. Review.


Role of miRNAs and alternative mRNA 3'-end cleavage and polyadenylation of their mRNA targets in cardiomyocyte hypertrophy.

Soetanto R, Hynes CJ, Patel HR, Humphreys DT, Evers M, Duan G, Parker BJ, Archer SK, Clancy JL, Graham RM, Beilharz TH, Smith NJ, Preiss T.

Biochim Biophys Acta. 2016 May;1859(5):744-56. doi: 10.1016/j.bbagrm.2016.03.010. Epub 2016 Mar 24.


Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2016 May 19;44(9):4486. doi: 10.1093/nar/gkw091. Epub 2016 Feb 9. No abstract available.


Bone and bone marrow involvement in sarcoidosis.

Yachoui R, Parker BJ, Nguyen TT.

Rheumatol Int. 2015 Nov;35(11):1917-24. doi: 10.1007/s00296-015-3341-y. Epub 2015 Aug 7. Review.


Transcriptome dynamics of the microRNA inhibition response.

Wen J, Leucci E, Vendramin R, Kauppinen S, Lund AH, Krogh A, Parker BJ.

Nucleic Acids Res. 2015 Jul 27;43(13):6207-21. doi: 10.1093/nar/gkv603. Epub 2015 Jun 18. Erratum in: Nucleic Acids Res. 2016 May 19;44(9):4486.


Mechanisms of symbiont-conferred protection against natural enemies: an ecological and evolutionary framework.

Gerardo NM, Parker BJ.

Curr Opin Insect Sci. 2014 Oct;4:8-14. doi: 10.1016/j.cois.2014.08.002. Epub 2014 Aug 19. Review.


Genetic variation in resistance and fecundity tolerance in a natural host-pathogen interaction.

Parker BJ, Garcia JR, Gerardo NM.

Evolution. 2014 Aug;68(8):2421-9. doi: 10.1111/evo.12418. Epub 2014 May 6.


Exposure to natural pathogens reveals costly aphid response to fungi but not bacteria.

Barribeau SM, Parker BJ, Gerardo NM.

Ecol Evol. 2014 Feb;4(4):488-93. doi: 10.1002/ece3.892. Epub 2014 Jan 23.


Partner associations across sympatric broad-headed bug species and their environmentally acquired bacterial symbionts.

Garcia JR, Laughton AM, Malik Z, Parker BJ, Trincot C, S L Chiang S, Chung E, Gerardo NM.

Mol Ecol. 2014 Mar;23(6):1333-47. doi: 10.1111/mec.12655. Epub 2014 Feb 7.


Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.

Pedersen JS, Valen E, Velazquez AM, Parker BJ, Rasmussen M, Lindgreen S, Lilje B, Tobin DJ, Kelly TK, Vang S, Andersson R, Jones PA, Hoover CA, Tikhonov A, Prokhortchouk E, Rubin EM, Sandelin A, Gilbert MT, Krogh A, Willerslev E, Orlando L.

Genome Res. 2014 Mar;24(3):454-66. doi: 10.1101/gr.163592.113. Epub 2013 Dec 3.


Exposure to bacterial signals does not alter pea aphids' survival upon a second challenge or investment in production of winged offspring.

ter Braak B, Laughton AM, Altincicek B, Parker BJ, Gerardo NM.

PLoS One. 2013 Aug 29;8(8):e73600. doi: 10.1371/journal.pone.0073600. eCollection 2013.


Molecular pathways involved in the improvement of non-alcoholic fatty liver disease.

Paz-Filho G, Mastronardi CA, Parker BJ, Khan A, Inserra A, Matthaei KI, Ehrhart-Bornstein M, Bornstein S, Wong ML, Licinio J.

J Mol Endocrinol. 2013 Jun 29;51(1):167-79. doi: 10.1530/JME-13-0072. Print 2013.


Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.

Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MA, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J.

Genome Res. 2013 Aug;23(8):1235-47. doi: 10.1101/gr.155408.113. Epub 2013 May 1.


Symbiont-mediated protection against fungal pathogens in pea aphids: a role for pathogen specificity?

Parker BJ, Spragg CJ, Altincicek B, Gerardo NM.

Appl Environ Microbiol. 2013 Apr;79(7):2455-8. doi: 10.1128/AEM.03193-12. Epub 2013 Jan 25.


Investigation of rheumatoid arthritis genetic susceptibility markers in the early rheumatoid arthritis study further replicates the TRAF1 association with radiological damage.

Viatte S, Plant D, Lunt M, Fu B, Flynn E, Parker BJ, Galloway J, Solymossy C, Worthington J, Symmons DP, Dixey JJ, Young A, Barton A.

J Rheumatol. 2013 Feb;40(2):144-56. doi: 10.3899/jrheum.121034. Epub 2012 Dec 15.


Advocates' perspective: neoadjuvant chemotherapy for breast cancer.

Perlmutter J, Axler S, Baas C, Beckwith BJ, Bonoff A, Brain S, Delapine M, Devine M, Frank E, Fraser V, Gallece M, Geoghegan C, Hamade H, Heditsian D, Hirschhorn B, Kandell S, Laxague D, Lestage B, Lyzen M, Madden D, Mertz SA, Parker BJ, Roach N, Sauers N, Vincent L, Waddell D, Wetzel M, Wright K.

J Clin Oncol. 2012 Dec 20;30(36):4586-8; author reply 4588-9. doi: 10.1200/JCO.2012.44.1824. Epub 2012 Nov 19. No abstract available.


Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.

Nekrasov M, Amrichova J, Parker BJ, Soboleva TA, Jack C, Williams R, Huttley GA, Tremethick DJ.

Nat Struct Mol Biol. 2012 Nov;19(11):1076-83. doi: 10.1038/nsmb.2424. Epub 2012 Oct 21.


Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.

Squires JE, Patel HR, Nousch M, Sibbritt T, Humphreys DT, Parker BJ, Suter CM, Preiss T.

Nucleic Acids Res. 2012 Jun;40(11):5023-33. doi: 10.1093/nar/gks144. Epub 2012 Feb 16.


A brief intervention for prevention of sexually transmitted infection among battered women.

Laughon K, Sutherland MA, Parker BJ.

J Obstet Gynecol Neonatal Nurs. 2011 Nov-Dec;40(6):702-8. doi: 10.1111/j.1552-6909.2011.01305.x.


New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.

Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker R, Pedersen JS.

Genome Res. 2011 Nov;21(11):1929-43. doi: 10.1101/gr.112516.110. Epub 2011 Oct 12.


Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

Lin MF, Kheradpour P, Washietl S, Parker BJ, Pedersen JS, Kellis M.

Genome Res. 2011 Nov;21(11):1916-28. doi: 10.1101/gr.108753.110. Epub 2011 Oct 12.


A high-resolution map of human evolutionary constraint using 29 mammals.

Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, Alföldi J, Beal K, Chang J, Clawson H, Cuff J, Di Palma F, Fitzgerald S, Flicek P, Guttman M, Hubisz MJ, Jaffe DB, Jungreis I, Kent WJ, Kostka D, Lara M, Martins AL, Massingham T, Moltke I, Raney BJ, Rasmussen MD, Robinson J, Stark A, Vilella AJ, Wen J, Xie X, Zody MC; Broad Institute Sequencing Platform and Whole Genome Assembly Team, Baldwin J, Bloom T, Chin CW, Heiman D, Nicol R, Nusbaum C, Young S, Wilkinson J, Worley KC, Kovar CL, Muzny DM, Gibbs RA; Baylor College of Medicine Human Genome Sequencing Center Sequencing Team, Cree A, Dihn HH, Fowler G, Jhangiani S, Joshi V, Lee S, Lewis LR, Nazareth LV, Okwuonu G, Santibanez J, Warren WC, Mardis ER, Weinstock GM, Wilson RK; Genome Institute at Washington University, Delehaunty K, Dooling D, Fronik C, Fulton L, Fulton B, Graves T, Minx P, Sodergren E, Birney E, Margulies EH, Herrero J, Green ED, Haussler D, Siepel A, Goldman N, Pollard KS, Pedersen JS, Lander ES, Kellis M.

Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530.


Systematic clustering of transcription start site landscapes.

Zhao X, Valen E, Parker BJ, Sandelin A.

PLoS One. 2011;6(8):e23409. doi: 10.1371/journal.pone.0023409. Epub 2011 Aug 24.


Non-immunological defense in an evolutionary framework.

Parker BJ, Barribeau SM, Laughton AM, de Roode JC, Gerardo NM.

Trends Ecol Evol. 2011 May;26(5):242-8. doi: 10.1016/j.tree.2011.02.005. Epub 2011 Mar 23. Review.


MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action.

Wen J, Parker BJ, Jacobsen A, Krogh A.

RNA. 2011 May;17(5):820-34. doi: 10.1261/rna.2387911. Epub 2011 Mar 9.


Evaluating an evidence-based bundle for preventing surgical site infection: a randomized trial.

Anthony T, Murray BW, Sum-Ping JT, Lenkovsky F, Vornik VD, Parker BJ, McFarlin JE, Hartless K, Huerta S.

Arch Surg. 2011 Mar;146(3):263-9. doi: 10.1001/archsurg.2010.249. Epub 2010 Nov 15.


Host behaviour and exposure risk in an insect-pathogen interaction.

Parker BJ, Elderd BD, Dwyer G.

J Anim Ecol. 2010 Jul;79(4):863-70. doi: 10.1111/j.1365-2656.2010.01690.x. Epub 2010 Apr 9.


Immunity and other defenses in pea aphids, Acyrthosiphon pisum.

Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, de Vos M, Duncan EJ, Evans JD, Gabaldón T, Ghanim M, Heddi A, Kaloshian I, Latorre A, Moya A, Nakabachi A, Parker BJ, Pérez-Brocal V, Pignatelli M, Rahbé Y, Ramsey JS, Spragg CJ, Tamames J, Tamarit D, Tamborindeguy C, Vincent-Monegat C, Vilcinskas A.

Genome Biol. 2010;11(2):R21. doi: 10.1186/gb-2010-11-2-r21. Epub 2010 Feb 23.


Predictors of genital injury after nonconsensual intercourse.

Anderson SL, Parker BJ, Bourguignon CM.

Adv Emerg Nurs J. 2009 Jul-Sep;31(3):236-47. doi: 10.1097/TME.0b013e3181afd306.


Breast cancer in the context of intimate partner violence: a qualitative study.

Sawin EM, Laughon K, Parker BJ, Steeves RH.

Oncol Nurs Forum. 2009 Nov;36(6):686-92. doi: 10.1188/09.ONF.686-692.


Predicting microRNA targets in time-series microarray experiments via functional data analysis.

Parker BJ, Wen J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S32. doi: 10.1186/1471-2105-10-S1-S32.

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