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Items: 1 to 50 of 395

1.

A framework for evaluating correspondence between brain images using anatomical fiducials.

Lau JC, Parrent AG, Demarco J, Gupta G, Kai J, Stanley OW, Kuehn T, Park PJ, Ferko K, Khan AR, Peters TM.

Hum Brain Mapp. 2019 Jun 7. doi: 10.1002/hbm.24693. [Epub ahead of print]

PMID:
31175816
2.

Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma.

Lee JJ, Park S, Park H, Kim S, Lee J, Lee J, Youk J, Yi K, An Y, Park IK, Kang CH, Chung DH, Kim TM, Jeon YK, Hong D, Park PJ, Ju YS, Kim YT.

Cell. 2019 Jun 13;177(7):1842-1857.e21. doi: 10.1016/j.cell.2019.05.013. Epub 2019 May 30.

PMID:
31155235
3.

Lindera glauca (Siebold et Zucc.) Blume Stem Extracts Protect Against tert-Butyl Hydroperoxide-Induced Oxidative Stress.

Kim YS, Kim EK, Dong X, Park JS, Shin WB, Kim SJ, Go EA, Park PJ, Lim BO.

J Med Food. 2019 May;22(5):508-520. doi: 10.1089/jmf.2018.4289.

PMID:
31084540
4.

Tibanna: software for scalable execution of portable pipelines on the cloud.

Lee S, Johnson J, Vitzthum C, Kırlı K, Alver BH, Park PJ.

Bioinformatics. 2019 May 11. pii: btz379. doi: 10.1093/bioinformatics/btz379. [Epub ahead of print]

PMID:
31077294
5.

Theaflavin-Enriched Fraction Stimulates Adipogenesis in Human Subcutaneous Fat Cells.

Park PJ, Rha CS, Kim ST.

Int J Mol Sci. 2019 Apr 25;20(8). pii: E2034. doi: 10.3390/ijms20082034.

6.

BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors.

Wang X, Wang S, Troisi EC, Howard TP, Haswell JR, Wolf BK, Hawk WH, Ramos P, Oberlick EM, Tzvetkov EP, Vazquez F, Hahn WC, Park PJ, Roberts CWM.

Nat Commun. 2019 Apr 23;10(1):1881. doi: 10.1038/s41467-019-09891-7.

7.
8.

Detecting the mutational signature of homologous recombination deficiency in clinical samples.

Gulhan DC, Lee JJ, Melloni GEM, Cortés-Ciriano I, Park PJ.

Nat Genet. 2019 May;51(5):912-919. doi: 10.1038/s41588-019-0390-2. Epub 2019 Apr 15.

PMID:
30988514
9.

Prognostic markers affecting the early recurrence of hepatocellular carcinoma with liver cirrhosis after curative resection.

Kim WJ, Lim TW, Park PJ, Choi SB, Kim WB.

Int J Biol Markers. 2019 Jun;34(2):123-131. doi: 10.1177/1724600819834306. Epub 2019 Apr 12.

PMID:
30977422
10.

Complete Genome Sequence of Rhodococcus erythropolis Phage Shuman.

Ponce Reyes S, Park PJ, Kaluka D, Washington JM.

Microbiol Resour Announc. 2019 Mar 28;8(13). pii: e00113-19. doi: 10.1128/MRA.00113-19.

11.

Prognostic impact of the combination of the neutrophil-to-lymphocyte ratio and serum carbohydrate antigen 19-9 in patients with pancreas head cancer.

Kim WJ, Lim TW, Park PJ, Choi SB, Kim WB.

ANZ J Surg. 2019 Mar 20. doi: 10.1111/ans.15029. [Epub ahead of print]

PMID:
30895709
12.

Linked-read analysis identifies mutations in single-cell DNA-sequencing data.

Bohrson CL, Barton AR, Lodato MA, Rodin RE, Luquette LJ, Viswanadham VV, Gulhan DC, Cortés-Ciriano I, Sherman MA, Kwon M, Coulter ME, Galor A, Walsh CA, Park PJ.

Nat Genet. 2019 Apr;51(4):749-754. doi: 10.1038/s41588-019-0366-2. Epub 2019 Mar 18.

PMID:
30886424
13.

MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors.

Howard TP, Arnoff TE, Song MR, Giacomelli AO, Wang X, Hong AL, Dharia NV, Wang S, Vazquez F, Pham MT, Morgan AM, Wachter F, Bird GH, Kugener G, Oberlick EM, Rees MG, Tiv HL, Hwang JH, Walsh KH, Cook A, Krill-Burger JM, Tsherniak A, Gokhale PC, Park PJ, Stegmaier K, Walensky LD, Hahn WC, Roberts CWM.

Cancer Res. 2019 May 1;79(9):2404-2414. doi: 10.1158/0008-5472.CAN-18-3066. Epub 2019 Feb 12.

PMID:
30755442
14.

The "Kickstand Rod" technique for correction of coronal imbalance in patients with adult spinal deformity: theory and technical considerations.

Makhni MC, Cerpa M, Lin JD, Park PJ, Lenke LG.

J Spine Surg. 2018 Dec;4(4):798-802. doi: 10.21037/jss.2018.11.04.

15.

MicroRNA-29a activates a multi-component growth and invasion program in glioblastoma.

Zhao Y, Huang W, Kim TM, Jung Y, Menon LG, Xing H, Li H, Carroll RS, Park PJ, Yang HW, Johnson MD.

J Exp Clin Cancer Res. 2019 Jan 25;38(1):36. doi: 10.1186/s13046-019-1026-1.

16.

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA.

Wang S, Chen J, Garcia SP, Liang X, Zhang F, Yan P, Yu H, Wei W, Li Z, Wang J, Le H, Han Z, Luo X, Day DS, Stevens SM, Zhang Y, Park PJ, Liu ZJ, Sun K, Yuan GC, Pu WT, Zhang B.

Genome Res. 2019 Feb;29(2):193-207. doi: 10.1101/gr.239053.118. Epub 2019 Jan 22.

17.

Cervical disc arthroplasty: tips and tricks.

Makhni MC, Osorio JA, Park PJ, Lombardi JM, Riew KD.

Int Orthop. 2019 Apr;43(4):777-783. doi: 10.1007/s00264-018-4259-2. Epub 2018 Dec 5. Review.

PMID:
30519869
18.

Laparoscopic reoperation for pediatric recurrent inguinal hernia after previous laparoscopic repair.

Lee SR, Park PJ.

Hernia. 2018 Oct 30. doi: 10.1007/s10029-018-1840-y. [Epub ahead of print]

PMID:
30377856
19.

Anti-inflammatory effect of the extract from fermented Asterina pectinifera with Cordyceps militaris mycelia in LPS-induced RAW264.7 macrophages.

Kim YS, Shin WB, Dong X, Kim EK, Nawarathna WPAS, Kim H, Park PJ.

Food Sci Biotechnol. 2017 Dec 12;26(6):1633-1640. doi: 10.1007/s10068-017-0233-9. eCollection 2017.

20.

HiGlass: web-based visual exploration and analysis of genome interaction maps.

Kerpedjiev P, Abdennur N, Lekschas F, McCallum C, Dinkla K, Strobelt H, Luber JM, Ouellette SB, Azhir A, Kumar N, Hwang J, Lee S, Alver BH, Pfister H, Mirny LA, Park PJ, Gehlenborg N.

Genome Biol. 2018 Aug 24;19(1):125. doi: 10.1186/s13059-018-1486-1.

21.
22.

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Kwok-Shing Ng P, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 Aug 9;174(4):1034-1035. doi: 10.1016/j.cell.2018.07.034. No abstract available.

23.

A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases.

Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Li W, Park PJ, Kucherlapati R, Creighton CJ.

Cell Rep. 2018 Jul 10;24(2):515-527. doi: 10.1016/j.celrep.2018.06.025.

24.

The BabySeq project: implementing genomic sequencing in newborns.

Holm IA, Agrawal PB, Ceyhan-Birsoy O, Christensen KD, Fayer S, Frankel LA, Genetti CA, Krier JB, LaMay RC, Levy HL, McGuire AL, Parad RB, Park PJ, Pereira S, Rehm HL, Schwartz TS, Waisbren SE, Yu TW; BabySeq Project Team, Green RC, Beggs AH.

BMC Pediatr. 2018 Jul 9;18(1):225. doi: 10.1186/s12887-018-1200-1.

25.

EED, a member of the polycomb group, is required for nephron differentiation and the maintenance of nephron progenitor cells.

Zhang L, Ettou S, Khalid M, Taglienti M, Jain D, Jung YL, Seager C, Liu Y, Ng KH, Park PJ, Kreidberg JA.

Development. 2018 Jul 18;145(14). pii: dev157149. doi: 10.1242/dev.157149.

26.

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data.

Fan J, Lee HO, Lee S, Ryu DE, Lee S, Xue C, Kim SJ, Kim K, Barkas N, Park PJ, Park WY, Kharchenko PV.

Genome Res. 2018 Aug;28(8):1217-1227. doi: 10.1101/gr.228080.117. Epub 2018 Jun 13.

27.

Detecting Somatic Mutations in Normal Cells.

Dou Y, Gold HD, Luquette LJ, Park PJ.

Trends Genet. 2018 Jul;34(7):545-557. doi: 10.1016/j.tig.2018.04.003. Epub 2018 May 3. Review.

28.

Single-Center Experience Using Marginal Liver Grafts in Korea.

Park PJ, Yu YD, Yoon YI, Kim SR, Kim DS.

Transplant Proc. 2018 May;50(4):1147-1152. doi: 10.1016/j.transproceed.2018.01.040.

PMID:
29731083
29.

Human versus Robot: A Propensity-Matched Analysis of the Accuracy of Free Hand versus Robotic Guidance for Placement of S2 Alar-Iliac (S2AI) Screws.

Shillingford JN, Laratta JL, Park PJ, Lombardi JM, Tuchman A, Saifi C, Lehman RA Jr, Lenke LG.

Spine (Phila Pa 1976). 2018 Nov 1;43(21):E1297-E1304. doi: 10.1097/BRS.0000000000002694.

PMID:
29672421
30.

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 Apr 5;173(2):371-385.e18. doi: 10.1016/j.cell.2018.02.060. Erratum in: Cell. 2018 Aug 9;174(4):1034-1035.

31.

A Mouse Model of Intestinal Partial Obstruction.

Ha SE, Wei L, Jorgensen BG, Lee MY, Park PJ, Poudrier SM, Ro S.

J Vis Exp. 2018 Mar 5;(133). doi: 10.3791/57381.

PMID:
29553517
32.

Epidemiology and Clinical Management of Traumatic Spine Injuries at a Major Government Hospital in Cambodia.

Choi JH, Park PJ, Din V, Sam N, Iv V, Park KB.

Asian Spine J. 2017 Dec;11(6):908-916. doi: 10.4184/asj.2017.11.6.908. Epub 2017 Dec 7.

33.

Aging and neurodegeneration are associated with increased mutations in single human neurons.

Lodato MA, Rodin RE, Bohrson CL, Coulter ME, Barton AR, Kwon M, Sherman MA, Vitzthum CM, Luquette LJ, Yandava CN, Yang P, Chittenden TW, Hatem NE, Ryu SC, Woodworth MB, Park PJ, Walsh CA.

Science. 2018 Feb 2;359(6375):555-559. doi: 10.1126/science.aao4426. Epub 2017 Dec 7. Erratum in: Science. 2018 Jul 6;361(6397):.

34.

PaSD-qc: quality control for single cell whole-genome sequencing data using power spectral density estimation.

Sherman MA, Barton AR, Lodato MA, Vitzthum C, Coulter ME, Walsh CA, Park PJ.

Nucleic Acids Res. 2018 Feb 28;46(4):e20. doi: 10.1093/nar/gkx1195.

35.

Corrigendum: The 4D nucleome project.

Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network.

Nature. 2017 Dec 14;552(7684):278. doi: 10.1038/nature24667. Epub 2017 Nov 22.

PMID:
29168505
36.

Prevalence and detection of low-allele-fraction variants in clinical cancer samples.

Shin HT, Choi YL, Yun JW, Kim NKD, Kim SY, Jeon HJ, Nam JY, Lee C, Ryu D, Kim SC, Park K, Lee E, Bae JS, Son DS, Joung JG, Lee J, Kim ST, Ahn MJ, Lee SH, Ahn JS, Lee WY, Oh BY, Park YH, Lee JE, Lee KH, Kim HC, Kim KM, Im YH, Park K, Park PJ, Park WY.

Nat Commun. 2017 Nov 9;8(1):1377. doi: 10.1038/s41467-017-01470-y.

37.

Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila.

Kang H, Jung YL, McElroy KA, Zee BM, Wallace HA, Woolnough JL, Park PJ, Kuroda MI.

Genes Dev. 2017 Oct 1;31(19):1988-2002. doi: 10.1101/gad.305987.117. Epub 2017 Oct 25.

38.

Understanding patient preferences for femoral central venous catheterization among patients with sickle cell disease.

Park PJ, Cole SS, Bercu ZL, Martin J, Newsome J.

J Vasc Access. 2018 Mar;19(2):199-200. doi: 10.5301/jva.5000794. Epub 2018 Feb 19. No abstract available.

PMID:
28983899
39.

The 4D nucleome project.

Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network.

Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Erratum in: Nature. 2017 Nov 22;:.

40.

VEGF amplifies transcription through ETS1 acetylation to enable angiogenesis.

Chen J, Fu Y, Day DS, Sun Y, Wang S, Liang X, Gu F, Zhang F, Stevens SM, Zhou P, Li K, Zhang Y, Lin RZ, Smith LEH, Zhang J, Sun K, Melero-Martin JM, Han Z, Park PJ, Zhang B, Pu WT.

Nat Commun. 2017 Aug 29;8(1):383. doi: 10.1038/s41467-017-00405-x.

41.

Taurine Attenuates Epithelial-Mesenchymal Transition-Related Genes in Human Prostate Cancer Cells.

Tang Y, Kim YS, Choi EJ, Hwang YJ, Yun YS, Bae SM, Park PJ, Kim EK.

Adv Exp Med Biol. 2017;975 Pt 2:1203-1212. doi: 10.1007/978-94-024-1079-2_96.

PMID:
28849534
42.

Protective Effect of Taurine on Mice with Doxorubicin-induced Acute Kidney Injury.

Kim YS, Sung SH, Tang Y, Choi EJ, Choi YJ, Hwang YJ, Park PJ, Kim EK.

Adv Exp Med Biol. 2017;975 Pt 2:1191-1201. doi: 10.1007/978-94-024-1079-2_95.

PMID:
28849533
43.

Taurine Attenuates Doxorubicin-Induced Toxicity on B16F10 Cells.

Kim YS, Kim EK, Hwang JW, Kim WS, Shin WB, Natarajan SB, Moon SH, Jeon BT, Park PJ.

Adv Exp Med Biol. 2017;975 Pt 2:1179-1190. doi: 10.1007/978-94-024-1079-2_94.

PMID:
28849532
44.

Antioxidant Effect of Taurine-Rich Paroctopus dofleini Extracts Through Inhibiting ROS Production Against LPS-Induced Oxidative Stress In Vitro and In Vivo Model.

Kim YS, Kim EK, Jeon NJ, Ryu BI, Hwang JW, Choi EJ, Moon SH, Jeon BT, Park PJ.

Adv Exp Med Biol. 2017;975 Pt 2:1165-1177. doi: 10.1007/978-94-024-1079-2_93.

PMID:
28849531
45.

Antioxidant Activity of Extract from the Cephalothorax of Fenneropenaeus chinensis.

Kim YS, Kim EK, Ryu BI, Jeon NJ, Hwang JW, Choi EJ, Moon SH, Jeon BT, Park PJ.

Adv Exp Med Biol. 2017;975 Pt 2:1153-1163. doi: 10.1007/978-94-024-1079-2_92.

PMID:
28849530
46.

Fermented Asterina pectinifera with Cordyceps militaris Mycelia Induced Apoptosis in B16F10 Melanoma Cells.

Kim YS, Kim EK, Hwang JW, Kim JS, Kim H, Dong X, Natarajan SB, Moon SH, Jeon BT, Park PJ.

Adv Exp Med Biol. 2017;975 Pt 2:1141-1152. doi: 10.1007/978-94-024-1079-2_91.

PMID:
28849529
47.

Neuroprotective Effect of Taurine-Rich Cuttlefish (Sepia officinalis) Extract Against Hydrogen Peroxide-Induced Oxidative Stress in SH-SY5Y Cells.

Kim YS, Kim EK, Hwang JW, Kim JS, Shin WB, Dong X, Nawarathna WPAS, Moon SH, Jeon BT, Park PJ.

Adv Exp Med Biol. 2017;975 Pt 1:243-254. doi: 10.1007/978-94-024-1079-2_22.

PMID:
28849460
48.

Transcriptome analysis of PDGFRα+ cells identifies T-type Ca2+ channel CACNA1G as a new pathological marker for PDGFRα+ cell hyperplasia.

Ha SE, Lee MY, Kurahashi M, Wei L, Jorgensen BG, Park C, Park PJ, Redelman D, Sasse KC, Becker LS, Sanders KM, Ro S.

PLoS One. 2017 Aug 14;12(8):e0182265. doi: 10.1371/journal.pone.0182265. eCollection 2017.

49.

Clinical Application of Targeted Deep Sequencing in Solid-Cancer Patients and Utility for Biomarker-Selected Clinical Trials.

Kim ST, Kim KM, Kim NKD, Park JO, Ahn S, Yun JW, Kim KT, Park SH, Park PJ, Kim HC, Sohn TS, Choi DI, Cho JH, Heo JS, Kwon W, Lee H, Min BH, Hong SN, Park YS, Lim HY, Kang WK, Park WY, Lee J.

Oncologist. 2017 Oct;22(10):1169-1177. doi: 10.1634/theoncologist.2017-0020. Epub 2017 Jul 12.

50.

The medicolegal landscape of spine surgery: how do surgeons fare?

Makhni MC, Park PJ, Jimenez J, Saifi C, Caldwell JM, Ha A, Figueroa-Santana B, Lehman RA Jr, Weidenbaum M.

Spine J. 2018 Feb;18(2):209-215. doi: 10.1016/j.spinee.2017.06.038. Epub 2017 Jun 30.

PMID:
28673825

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