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Items: 1 to 50 of 419

1.

Efficacy of Intraprocedural Superior Hypogastric Nerve Block in Reduction of Postuterine Artery Embolization Narcotic Analgesia Use.

Park PJ, Kokabi N, Nadendla P, Lindsey T, Dariushnia SR.

Can Assoc Radiol J. 2020 Jan 27:846537119888391. doi: 10.1177/0846537119888391. [Epub ahead of print]

PMID:
32062997
2.

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing.

Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS; PCAWG Structural Variation Working Group, Park PJ; PCAWG Consortium.

Nat Genet. 2020 Feb 5. doi: 10.1038/s41588-019-0576-7. [Epub ahead of print]

PMID:
32025003
3.

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.

Rodriguez-Martin B, Alvarez EG, Baez-Ortega A, Zamora J, Supek F, Demeulemeester J, Santamarina M, Ju YS, Temes J, Garcia-Souto D, Detering H, Li Y, Rodriguez-Castro J, Dueso-Barroso A, Bruzos AL, Dentro SC, Blanco MG, Contino G, Ardeljan D, Tojo M, Roberts ND, Zumalave S, Edwards PAW, Weischenfeldt J, Puiggròs M, Chong Z, Chen K, Lee EA, Wala JA, Raine K, Butler A, Waszak SM, Navarro FCP, Schumacher SE, Monlong J, Maura F, Bolli N, Bourque G, Gerstein M, Park PJ, Wedge DC, Beroukhim R, Torrents D, Korbel JO, Martincorena I, Fitzgerald RC, Van Loo P, Kazazian HH, Burns KH; PCAWG Structural Variation Working Group, Campbell PJ, Tubio JMC; PCAWG Consortium.

Nat Genet. 2020 Feb 5. doi: 10.1038/s41588-019-0562-0. [Epub ahead of print]

PMID:
32024998
4.

Genomic footprints of activated telomere maintenance mechanisms in cancer.

Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M; PCAWG-Structural Variation Working Group, Brors B, Rippe K, Jones DTW, Feuerbach L; PCAWG Consortium.

Nat Commun. 2020 Feb 5;11(1):733. doi: 10.1038/s41467-019-13824-9.

5.

GiniQC: a measure for quantifying noise in single-cell Hi-C data.

Horton CA, Alver BH, Park PJ.

Bioinformatics. 2020 Jan 31. pii: btaa048. doi: 10.1093/bioinformatics/btaa048. [Epub ahead of print]

PMID:
32003786
6.

Adding iliopubic tract repair to high ligation reduces recurrence risk in pediatric laparoscopic transabdominal inguinal hernia repair.

Lee SR, Park PJ.

Surg Endosc. 2020 Jan 14. doi: 10.1007/s00464-020-07382-1. [Epub ahead of print]

PMID:
31938927
7.

Accurate detection of mosaic variants in sequencing data without matched controls.

Dou Y, Kwon M, Rodin RE, Cortés-Ciriano I, Doan R, Luquette LJ, Galor A, Bohrson C, Walsh CA, Park PJ.

Nat Biotechnol. 2020 Jan 6. doi: 10.1038/s41587-019-0368-8. [Epub ahead of print]

PMID:
31907404
8.

The "kickstand rod" technique for correction of coronal imbalance in patients with adult spinal deformity: initial case series.

Makhni MC, Zhang Y, Park PJ, Cerpa M, Yang M, Pham MH, Sielatycki JA, Beauchamp EC, Lenke LG.

J Neurosurg Spine. 2019 Nov 29:1-8. doi: 10.3171/2019.9.SPINE19389. [Epub ahead of print]

PMID:
31783351
9.

Path to Prevention of Spinal Trauma in a Low- to Middle-income Country: A Single-center Study in Phnom Penh, Cambodia.

Makhni MC, Vatan NM, Park PJ, Kabeer ZA, Cerpa M, Choi JH, Lombardi JM, Hong S, Kim Y, Lenke LG, Lehman R, Vycheth I, Park KB.

J Am Acad Orthop Surg Glob Res Rev. 2019 Oct 9;3(10). pii: e19.00080. doi: 10.5435/JAAOSGlobal-D-19-00080. eCollection 2019 Oct.

10.

Dual S2 Alar-Iliac Screw Technique With a Multirod Construct Across the Lumbosacral Junction: Obtaining Adequate Stability at the Lumbosacral Junction in Spinal Deformity Surgery.

Park PJ, Lin JD, Makhni MC, Cerpa M, Lehman RA, Lenke LG.

Neurospine. 2019 Nov 4. doi: 10.14245/ns.1938320.160. [Epub ahead of print]

11.

Global impact of somatic structural variation on the DNA methylome of human cancers.

Zhang Y, Yang L, Kucherlapati M, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Park PJ, Kucherlapati R, Creighton CJ.

Genome Biol. 2019 Oct 15;20(1):209. doi: 10.1186/s13059-019-1818-9.

12.

Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease.

Kim J, Hu C, Moufawad El Achkar C, Black LE, Douville J, Larson A, Pendergast MK, Goldkind SF, Lee EA, Kuniholm A, Soucy A, Vaze J, Belur NR, Fredriksen K, Stojkovska I, Tsytsykova A, Armant M, DiDonato RL, Choi J, Cornelissen L, Pereira LM, Augustine EF, Genetti CA, Dies K, Barton B, Williams L, Goodlett BD, Riley BL, Pasternak A, Berry ER, Pflock KA, Chu S, Reed C, Tyndall K, Agrawal PB, Beggs AH, Grant PE, Urion DK, Snyder RO, Waisbren SE, Poduri A, Park PJ, Patterson A, Biffi A, Mazzulli JR, Bodamer O, Berde CB, Yu TW.

N Engl J Med. 2019 Oct 24;381(17):1644-1652. doi: 10.1056/NEJMoa1813279. Epub 2019 Oct 9.

PMID:
31597037
13.

Author Correction: BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors.

Wang X, Wang S, Troisi EC, Howard TP, Haswell JR, Wolf BK, Hawk WH, Ramos P, Oberlick EM, Tzvetkov EP, Ross A, Vazquez F, Hahn WC, Park PJ, Roberts CWM.

Nat Commun. 2019 Sep 26;10(1):4445. doi: 10.1038/s41467-019-12524-8.

14.

Influence of Postoperative Finasteride Therapy on Recurrence of Gynecomastia After Mastectomy in Men Taking Finasteride for Alopecia.

Lee SG, Park PJ, Lee SR, Koo BH, Byun GY, Kim MJ, Kang HJ, Kim S, Oh BS, Lee YH.

Am J Mens Health. 2019 Sep-Oct;13(5):1557988319871423. doi: 10.1177/1557988319871423.

15.

Methicillin-resistant Staphylococcus aureus screening is important for surgeons.

Hyun IK, Park PJ, Park D, Choi SB, Han HJ, Song TJ, Jung CW, Kim WB.

Ann Hepatobiliary Pancreat Surg. 2019 Aug;23(3):265-273. doi: 10.14701/ahbps.2019.23.3.265. Epub 2019 Aug 30.

16.

Scallop Extracts Inhibited LPS-Induced Inflammation by Suppressing MAPK and NF-κB Activation in RAW264.7 Macrophages.

Dong X, Kim YS, Kim EK, Shin WB, Park JS, Kim SJ, Go EA, Park PJ, Kwon SC.

Adv Exp Med Biol. 2019;1155:1069-1081. doi: 10.1007/978-981-13-8023-5_88.

PMID:
31468468
17.

Anti-inflammatory Effects of Batillaria multiformis Water Extracts via NF-кB and MAPK Signaling Pathways in LPS-Induced RAW 264.7 Cells.

Shin WB, Dong X, Kim YS, Park JS, Kim SJ, Go EA, Kim EK, Park PJ.

Adv Exp Med Biol. 2019;1155:1001-1014. doi: 10.1007/978-981-13-8023-5_83.

PMID:
31468463
18.

Antioxidant and Protective Effects of Atrina Pectinata Extract.

Kim YS, Kim EK, Dong X, Shin WB, Park JS, Kim SJ, Go EA, Byun HG, Park PJ.

Adv Exp Med Biol. 2019;1155:627-641. doi: 10.1007/978-981-13-8023-5_56.

PMID:
31468436
19.

Antioxidant Activities of Viviparus Contectus Extract Against Tert-Butylhydroperoxide-Induced Oxidative Stress.

Kim YS, Kim EK, Dong X, Shin WB, Park JS, Kim SJ, Go EA, Byun HG, Park PJ.

Adv Exp Med Biol. 2019;1155:611-626. doi: 10.1007/978-981-13-8023-5_55.

PMID:
31468435
20.

Identification of somatic mutations in single cell DNA-seq using a spatial model of allelic imbalance.

Luquette LJ, Bohrson CL, Sherman MA, Park PJ.

Nat Commun. 2019 Aug 29;10(1):3908. doi: 10.1038/s41467-019-11857-8.

21.

Small-Molecule and CRISPR Screening Converge to Reveal Receptor Tyrosine Kinase Dependencies in Pediatric Rhabdoid Tumors.

Oberlick EM, Rees MG, Seashore-Ludlow B, Vazquez F, Nelson GM, Dharia NV, Weir BA, Tsherniak A, Ghandi M, Krill-Burger JM, Meyers RM, Wang X, Montgomery P, Root DE, Bieber JM, Radko S, Cheah JH, Hon CS, Shamji AF, Clemons PA, Park PJ, Dyer MA, Golub TR, Stegmaier K, Hahn WC, Stewart EA, Schreiber SL, Roberts CWM.

Cell Rep. 2019 Aug 27;28(9):2331-2344.e8. doi: 10.1016/j.celrep.2019.07.021.

22.

Development and validation of novel scoring system for the prediction of disease recurrence following resection of colorectal liver metastasis.

Kim WJ, Lim TW, Kang SH, Park PJ, Choi SB, Lee SI, Min BW, Kim WB.

Asian J Surg. 2020 Feb;43(2):438-446. doi: 10.1016/j.asjsur.2019.06.001. Epub 2019 Aug 19.

23.

An enhanced genetic model of colorectal cancer progression history.

Yang L, Wang S, Lee JJ, Lee S, Lee E, Shinbrot E, Wheeler DA, Kucherlapati R, Park PJ.

Genome Biol. 2019 Aug 15;20(1):168. doi: 10.1186/s13059-019-1782-4.

24.

Association between venous reflux and diameter of great saphenous vein in lower thigh.

Kim MJ, Park PJ, Koo BH, Lee SG, Byun GY, Lee SR.

J Vasc Surg Venous Lymphat Disord. 2020 Jan;8(1):100-105. doi: 10.1016/j.jvsv.2019.04.016. Epub 2019 Aug 8.

PMID:
31402294
25.

A framework for evaluating correspondence between brain images using anatomical fiducials.

Lau JC, Parrent AG, Demarco J, Gupta G, Kai J, Stanley OW, Kuehn T, Park PJ, Ferko K, Khan AR, Peters TM.

Hum Brain Mapp. 2019 Oct 1;40(14):4163-4179. doi: 10.1002/hbm.24693. Epub 2019 Jun 7.

PMID:
31175816
26.

Tracing Oncogene Rearrangements in the Mutational History of Lung Adenocarcinoma.

Lee JJ, Park S, Park H, Kim S, Lee J, Lee J, Youk J, Yi K, An Y, Park IK, Kang CH, Chung DH, Kim TM, Jeon YK, Hong D, Park PJ, Ju YS, Kim YT.

Cell. 2019 Jun 13;177(7):1842-1857.e21. doi: 10.1016/j.cell.2019.05.013. Epub 2019 May 30.

PMID:
31155235
27.

Lindera glauca (Siebold et Zucc.) Blume Stem Extracts Protect Against tert-Butyl Hydroperoxide-Induced Oxidative Stress.

Kim YS, Kim EK, Dong X, Park JS, Shin WB, Kim SJ, Go EA, Park PJ, Lim BO.

J Med Food. 2019 May;22(5):508-520. doi: 10.1089/jmf.2018.4289.

PMID:
31084540
28.

Tibanna: software for scalable execution of portable pipelines on the cloud.

Lee S, Johnson J, Vitzthum C, Kırlı K, Alver BH, Park PJ.

Bioinformatics. 2019 Nov 1;35(21):4424-4426. doi: 10.1093/bioinformatics/btz379.

PMID:
31077294
29.

Theaflavin-Enriched Fraction Stimulates Adipogenesis in Human Subcutaneous Fat Cells.

Park PJ, Rha CS, Kim ST.

Int J Mol Sci. 2019 Apr 25;20(8). pii: E2034. doi: 10.3390/ijms20082034.

30.

BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors.

Wang X, Wang S, Troisi EC, Howard TP, Haswell JR, Wolf BK, Hawk WH, Ramos P, Oberlick EM, Tzvetkov EP, Ross A, Vazquez F, Hahn WC, Park PJ, Roberts CWM.

Nat Commun. 2019 Apr 23;10(1):1881. doi: 10.1038/s41467-019-09891-7. Erratum in: Nat Commun. 2019 Sep 26;10(1):4445.

31.
32.

Detecting the mutational signature of homologous recombination deficiency in clinical samples.

Gulhan DC, Lee JJ, Melloni GEM, Cortés-Ciriano I, Park PJ.

Nat Genet. 2019 May;51(5):912-919. doi: 10.1038/s41588-019-0390-2. Epub 2019 Apr 15.

PMID:
30988514
33.

Prognostic markers affecting the early recurrence of hepatocellular carcinoma with liver cirrhosis after curative resection.

Kim WJ, Lim TW, Park PJ, Choi SB, Kim WB.

Int J Biol Markers. 2019 Jun;34(2):123-131. doi: 10.1177/1724600819834306. Epub 2019 Apr 12.

PMID:
30977422
34.

Complete Genome Sequence of Rhodococcus erythropolis Phage Shuman.

Ponce Reyes S, Park PJ, Kaluka D, Washington JM.

Microbiol Resour Announc. 2019 Mar 28;8(13). pii: e00113-19. doi: 10.1128/MRA.00113-19.

35.

Prognostic impact of the combination of the neutrophil-to-lymphocyte ratio and serum carbohydrate antigen 19-9 in patients with pancreas head cancer.

Kim WJ, Lim TW, Park PJ, Choi SB, Kim WB.

ANZ J Surg. 2019 Jul;89(7-8):E302-E307. doi: 10.1111/ans.15029. Epub 2019 Mar 20.

PMID:
30895709
36.

Linked-read analysis identifies mutations in single-cell DNA-sequencing data.

Bohrson CL, Barton AR, Lodato MA, Rodin RE, Luquette LJ, Viswanadham VV, Gulhan DC, Cortés-Ciriano I, Sherman MA, Kwon M, Coulter ME, Galor A, Walsh CA, Park PJ.

Nat Genet. 2019 Apr;51(4):749-754. doi: 10.1038/s41588-019-0366-2. Epub 2019 Mar 18.

37.

MDM2 and MDM4 Are Therapeutic Vulnerabilities in Malignant Rhabdoid Tumors.

Howard TP, Arnoff TE, Song MR, Giacomelli AO, Wang X, Hong AL, Dharia NV, Wang S, Vazquez F, Pham MT, Morgan AM, Wachter F, Bird GH, Kugener G, Oberlick EM, Rees MG, Tiv HL, Hwang JH, Walsh KH, Cook A, Krill-Burger JM, Tsherniak A, Gokhale PC, Park PJ, Stegmaier K, Walensky LD, Hahn WC, Roberts CWM.

Cancer Res. 2019 May 1;79(9):2404-2414. doi: 10.1158/0008-5472.CAN-18-3066. Epub 2019 Feb 12.

PMID:
30755442
38.

The "Kickstand Rod" technique for correction of coronal imbalance in patients with adult spinal deformity: theory and technical considerations.

Makhni MC, Cerpa M, Lin JD, Park PJ, Lenke LG.

J Spine Surg. 2018 Dec;4(4):798-802. doi: 10.21037/jss.2018.11.04.

39.

MicroRNA-29a activates a multi-component growth and invasion program in glioblastoma.

Zhao Y, Huang W, Kim TM, Jung Y, Menon LG, Xing H, Li H, Carroll RS, Park PJ, Yang HW, Johnson MD.

J Exp Clin Cancer Res. 2019 Jan 25;38(1):36. doi: 10.1186/s13046-019-1026-1.

40.

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA.

Wang S, Chen J, Garcia SP, Liang X, Zhang F, Yan P, Yu H, Wei W, Li Z, Wang J, Le H, Han Z, Luo X, Day DS, Stevens SM, Zhang Y, Park PJ, Liu ZJ, Sun K, Yuan GC, Pu WT, Zhang B.

Genome Res. 2019 Feb;29(2):193-207. doi: 10.1101/gr.239053.118. Epub 2019 Jan 22.

41.

Cervical disc arthroplasty: tips and tricks.

Makhni MC, Osorio JA, Park PJ, Lombardi JM, Riew KD.

Int Orthop. 2019 Apr;43(4):777-783. doi: 10.1007/s00264-018-4259-2. Epub 2018 Dec 5. Review.

PMID:
30519869
42.

Laparoscopic reoperation for pediatric recurrent inguinal hernia after previous laparoscopic repair.

Lee SR, Park PJ.

Hernia. 2019 Aug;23(4):663-669. doi: 10.1007/s10029-018-1840-y. Epub 2018 Oct 30.

PMID:
30377856
43.

Anti-inflammatory effect of the extract from fermented Asterina pectinifera with Cordyceps militaris mycelia in LPS-induced RAW264.7 macrophages.

Kim YS, Shin WB, Dong X, Kim EK, Nawarathna WPAS, Kim H, Park PJ.

Food Sci Biotechnol. 2017 Dec 12;26(6):1633-1640. doi: 10.1007/s10068-017-0233-9. eCollection 2017.

44.

HiGlass: web-based visual exploration and analysis of genome interaction maps.

Kerpedjiev P, Abdennur N, Lekschas F, McCallum C, Dinkla K, Strobelt H, Luber JM, Ouellette SB, Azhir A, Kumar N, Hwang J, Lee S, Alver BH, Pfister H, Mirny LA, Park PJ, Gehlenborg N.

Genome Biol. 2018 Aug 24;19(1):125. doi: 10.1186/s13059-018-1486-1.

45.
46.

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Kwok-Shing Ng P, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 Aug 9;174(4):1034-1035. doi: 10.1016/j.cell.2018.07.034. No abstract available.

47.

A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases.

Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Li W, Park PJ, Kucherlapati R, Creighton CJ.

Cell Rep. 2018 Jul 10;24(2):515-527. doi: 10.1016/j.celrep.2018.06.025.

48.

The BabySeq project: implementing genomic sequencing in newborns.

Holm IA, Agrawal PB, Ceyhan-Birsoy O, Christensen KD, Fayer S, Frankel LA, Genetti CA, Krier JB, LaMay RC, Levy HL, McGuire AL, Parad RB, Park PJ, Pereira S, Rehm HL, Schwartz TS, Waisbren SE, Yu TW; BabySeq Project Team, Green RC, Beggs AH.

BMC Pediatr. 2018 Jul 9;18(1):225. doi: 10.1186/s12887-018-1200-1.

49.

EED, a member of the polycomb group, is required for nephron differentiation and the maintenance of nephron progenitor cells.

Zhang L, Ettou S, Khalid M, Taglienti M, Jain D, Jung YL, Seager C, Liu Y, Ng KH, Park PJ, Kreidberg JA.

Development. 2018 Jul 18;145(14). pii: dev157149. doi: 10.1242/dev.157149.

50.

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data.

Fan J, Lee HO, Lee S, Ryu DE, Lee S, Xue C, Kim SJ, Kim K, Barkas N, Park PJ, Park WY, Kharchenko PV.

Genome Res. 2018 Aug;28(8):1217-1227. doi: 10.1101/gr.228080.117. Epub 2018 Jun 13.

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