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Items: 19

1.

Increased Fecal Lactobacillus Is Associated With a Positive Glucose Hydrogen Breath Test in Bangladeshi Children.

Donowitz JR, Parikh HI, Taniuchi M, Gilchrist CA, Haque R, Kirkpatrick BD, Alam M, Kakon SH, Islam BZ, Afreen S, Kabir M, Nayak U, Colgate ER, Carmolli MP, Petri WA Jr.

Open Forum Infect Dis. 2019 Jun 1;6(7):ofz266. doi: 10.1093/ofid/ofz266. eCollection 2019 Jul.

2.

Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy.

Serrano MG, Parikh HI, Brooks JP, Edwards DJ, Arodz TJ, Edupuganti L, Huang B, Girerd PH, Bokhari YA, Bradley SP, Brooks JL, Dickinson MR, Drake JI, Duckworth RA 3rd, Fong SS, Glascock AL, Jean S, Jimenez NR, Khoury J, Koparde VN, Lara AM, Lee V, Matveyev AV, Milton SH, Mistry SD, Rozycki SK, Sheth NU, Smirnova E, Vivadelli SC, Wijesooriya NR, Xu J, Xu P, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Fettweis JM, Buck GA.

Nat Med. 2019 Jun;25(6):1001-1011. doi: 10.1038/s41591-019-0465-8. Epub 2019 May 29.

PMID:
31142850
3.

The vaginal microbiome and preterm birth.

Fettweis JM, Serrano MG, Brooks JP, Edwards DJ, Girerd PH, Parikh HI, Huang B, Arodz TJ, Edupuganti L, Glascock AL, Xu J, Jimenez NR, Vivadelli SC, Fong SS, Sheth NU, Jean S, Lee V, Bokhari YA, Lara AM, Mistry SD, Duckworth RA 3rd, Bradley SP, Koparde VN, Orenda XV, Milton SH, Rozycki SK, Matveyev AV, Wright ML, Huzurbazar SV, Jackson EM, Smirnova E, Korlach J, Tsai YC, Dickinson MR, Brooks JL, Drake JI, Chaffin DO, Sexton AL, Gravett MG, Rubens CE, Wijesooriya NR, Hendricks-Muñoz KD, Jefferson KK, Strauss JF 3rd, Buck GA.

Nat Med. 2019 Jun;25(6):1012-1021. doi: 10.1038/s41591-019-0450-2. Epub 2019 May 29.

PMID:
31142849
4.

Impact of Herpes Simplex Virus Type 2 and Human Immunodeficiency Virus Dual Infection on Female Genital Tract Mucosal Immunity and the Vaginal Microbiome.

Keller MJ, Huber A, Espinoza L, Serrano MG, Parikh HI, Buck GA, Gold JA, Wu Y, Wang T, Herold BC.

J Infect Dis. 2019 Apr 27. pii: jiz203. doi: 10.1093/infdis/jiz203. [Epub ahead of print]

PMID:
31111902
5.

Mycobacterium Avium Complex Diversity within Lung Disease as Revealed by Whole Genome Sequencing.

Operario DJ, Pholwat S, Koeppel AF, Prorock A, Bao Y, Sol-Church K, Scheurenbrand M, Poulter M, Turner S, Parikh HI, Mathers A, Houpt ER.

Am J Respir Crit Care Med. 2019 Apr 9. doi: 10.1164/rccm.201903-0669LE. [Epub ahead of print] No abstract available.

PMID:
30965019
6.

Don't overlook the little guy: An evaluation of the frequency of small plasmids co-conjugating with larger carbapenemase gene containing plasmids.

Barry KE, Wailan AM, Sheppard AE, Crook D, Vegesana K, Stoesser N, Parikh HI, Sebra R, Mathers AJ.

Plasmid. 2019 May;103:1-8. doi: 10.1016/j.plasmid.2019.03.005. Epub 2019 Mar 27.

7.

Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment.

Mathers AJ, Crook D, Vaughan A, Barry KE, Vegesana K, Stoesser N, Parikh HI, Sebra R, Kotay S, Walker AS, Sheppard AE.

Antimicrob Agents Chemother. 2019 May 24;63(6). pii: e02513-18. doi: 10.1128/AAC.02513-18. Print 2019 Jun.

8.

Relationship between vitamin D status and the vaginal microbiome during pregnancy.

Jefferson KK, Parikh HI, Garcia EM, Edwards DJ, Serrano MG, Hewison M, Shary JR, Powell AM, Hollis BW, Fettweis JM, Strauss Iii JF, Buck GA, Wagner CL.

J Perinatol. 2019 Jun;39(6):824-836. doi: 10.1038/s41372-019-0343-8. Epub 2019 Mar 11.

PMID:
30858609
9.

Discovery of rare ancestry-specific variants in the fetal genome that confer risk of preterm premature rupture of membranes (PPROM) and preterm birth.

Modi BP, Parikh HI, Teves ME, Kulkarni R, Liyu J, Romero R, York TP, Strauss JF 3rd.

BMC Med Genet. 2018 Oct 5;19(1):181. doi: 10.1186/s12881-018-0696-4.

10.

Mutations in fetal genes involved in innate immunity and host defense against microbes increase risk of preterm premature rupture of membranes (PPROM).

Modi BP, Teves ME, Pearson LN, Parikh HI, Haymond-Thornburg H, Tucker JL, Chaemsaithong P, Gomez-Lopez N, York TP, Romero R, Strauss JF 3rd.

Mol Genet Genomic Med. 2017 Nov;5(6):720-729. doi: 10.1002/mgg3.330. Epub 2017 Aug 23.

11.

Rare mutations and potentially damaging missense variants in genes encoding fibrillar collagens and proteins involved in their production are candidates for risk for preterm premature rupture of membranes.

Modi BP, Teves ME, Pearson LN, Parikh HI, Chaemsaithong P, Sheth NU, York TP, Romero R, Strauss JF 3rd.

PLoS One. 2017 Mar 27;12(3):e0174356. doi: 10.1371/journal.pone.0174356. eCollection 2017.

12.

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.

Parikh HI, Koparde VN, Bradley SP, Buck GA, Sheth NU.

BMC Bioinformatics. 2016 Dec 1;17(1):491.

13.

Design, synthesis, and biological evaluation of substrate-competitive inhibitors of C-terminal Binding Protein (CtBP).

Korwar S, Morris BL, Parikh HI, Coover RA, Doughty TW, Love IM, Hilbert BJ, Royer WE Jr, Kellogg GE, Grossman SR, Ellis KC.

Bioorg Med Chem. 2016 Jun 15;24(12):2707-15. doi: 10.1016/j.bmc.2016.04.037. Epub 2016 Apr 20.

14.

Identification of Small-Molecule Inhibitors against Meso-2, 6-Diaminopimelate Dehydrogenase from Porphyromonas gingivalis.

Stone VN, Parikh HI, El-rami F, Ge X, Chen W, Zhang Y, Kellogg GE, Xu P.

PLoS One. 2015 Nov 6;10(11):e0141126. doi: 10.1371/journal.pone.0141126. eCollection 2015.

15.

Skin-to-Skin Care and the Development of the Preterm Infant Oral Microbiome.

Hendricks-Muñoz KD, Xu J, Parikh HI, Xu P, Fettweis JM, Kim Y, Louie M, Buck GA, Thacker LR, Sheth NU.

Am J Perinatol. 2015 Nov;32(13):1205-16. doi: 10.1055/s-0035-1552941. Epub 2015 May 22.

16.

Anti-cytomegalovirus activity of the anthraquinone atanyl blue PRL.

Alam Z, Al-Mahdi Z, Zhu Y, McKee Z, Parris DS, Parikh HI, Kellogg GE, Kuchta A, McVoy MA.

Antiviral Res. 2015 Feb;114:86-95. doi: 10.1016/j.antiviral.2014.12.003. Epub 2014 Dec 10.

17.

Intuitive, but not simple: including explicit water molecules in protein-protein docking simulations improves model quality.

Parikh HI, Kellogg GE.

Proteins. 2014 Jun;82(6):916-32. doi: 10.1002/prot.24466. Epub 2013 Dec 9.

PMID:
24214407
18.

Biological characterization of 3-(2-amino-ethyl)-5-[3-(4-butoxyl-phenyl)-propylidene]-thiazolidine-2,4-dione (K145) as a selective sphingosine kinase-2 inhibitor and anticancer agent.

Liu K, Guo TL, Hait NC, Allegood J, Parikh HI, Xu W, Kellogg GE, Grant S, Spiegel S, Zhang S.

PLoS One. 2013;8(2):e56471. doi: 10.1371/journal.pone.0056471. Epub 2013 Feb 20.

19.

Identification of quercitrin as an inhibitor of the p90 S6 ribosomal kinase (RSK): structure of its complex with the N-terminal domain of RSK2 at 1.8 Å resolution.

Derewenda U, Artamonov M, Szukalska G, Utepbergenov D, Olekhnovich N, Parikh HI, Kellogg GE, Somlyo AV, Derewenda ZS.

Acta Crystallogr D Biol Crystallogr. 2013 Feb;69(Pt 2):266-75. doi: 10.1107/S0907444912045520. Epub 2013 Jan 19.

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