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Zebrafish Pigment Pattern Formation: Insights into the Development and Evolution of Adult Form.

Patterson LB, Parichy DM.

Annu Rev Genet. 2019 Sep 11. doi: 10.1146/annurev-genet-112618-043741. [Epub ahead of print]


Thyroid hormone regulates distinct paths to maturation in pigment cell lineages.

Saunders LM, Mishra AK, Aman AJ, Lewis VM, Toomey MB, Packer JS, Qiu X, McFaline-Figueroa JL, Corbo JC, Trapnell C, Parichy DM.

Elife. 2019 May 29;8. pii: e45181. doi: 10.7554/eLife.45181.


Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores.

Lewis VM, Saunders LM, Larson TA, Bain EJ, Sturiale SL, Gur D, Chowdhury S, Flynn JD, Allen MC, Deheyn DD, Lee JC, Simon JA, Lippincott-Schwartz J, Raible DW, Parichy DM.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11806-11811. doi: 10.1073/pnas.1901021116. Epub 2019 May 28.


Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish.

Salis P, Lorin T, Lewis V, Rey C, Marcionetti A, Escande ML, Roux N, Besseau L, Salamin N, Sémon M, Parichy D, Volff JN, Laudet V.

Pigment Cell Melanoma Res. 2019 May;32(3):391-402. doi: 10.1111/pcmr.12766. Epub 2019 Jan 29.


Evolution of Endothelin signaling and diversification of adult pigment pattern in Danio fishes.

Spiewak JE, Bain EJ, Liu J, Kou K, Sturiale SL, Patterson LB, Diba P, Eisen JS, Braasch I, Ganz J, Parichy DM.

PLoS Genet. 2018 Sep 18;14(9):e1007538. doi: 10.1371/journal.pgen.1007538. eCollection 2018 Sep.


Wnt/β-catenin regulates an ancient signaling network during zebrafish scale development.

Aman AJ, Fulbright AN, Parichy DM.

Elife. 2018 Jul 17;7. pii: e37001. doi: 10.7554/eLife.37001.


Melanophores Tune Out the Noise to Make Stripes.

Patterson LB, Parichy DM.

Dev Cell. 2018 Jun 4;45(5):544-545. doi: 10.1016/j.devcel.2018.05.014.


MicroCT-Based Phenomics in the Zebrafish Skeleton Reveals Virtues of Deep Phenotyping in a Distributed Organ System.

Hur M, Gistelinck CA, Huber P, Lee J, Thompson MH, Monstad-Rios AT, Watson CJ, McMenamin SK, Willaert A, Parichy DM, Coucke P, Kwon RY.

Zebrafish. 2018 Feb;15(1):77-78. doi: 10.1089/zeb.2017.1540. Epub 2017 Nov 27. No abstract available.


MicroCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ system.

Hur M, Gistelinck CA, Huber P, Lee J, Thompson MH, Monstad-Rios AT, Watson CJ, McMenamin SK, Willaert A, Parichy DM, Coucke P, Kwon RY.

Elife. 2017 Sep 8;6. pii: e26014. doi: 10.7554/eLife.26014.


A macrophage relay for long-distance signaling during postembryonic tissue remodeling.

Eom DS, Parichy DM.

Science. 2017 Mar 24;355(6331):1317-1320. doi: 10.1126/science.aal2745. Epub 2017 Feb 16.


Identification of Mutant Genes and Introgressed Tiger Salamander DNA in the Laboratory Axolotl, Ambystoma mexicanum.

Woodcock MR, Vaughn-Wolfe J, Elias A, Kump DK, Kendall KD, Timoshevskaya N, Timoshevskiy V, Perry DW, Smith JJ, Spiewak JE, Parichy DM, Voss SR.

Sci Rep. 2017 Jan 31;7(1):6. doi: 10.1038/s41598-017-00059-1.


Working with zebrafish at postembryonic stages.

McMenamin SK, Chandless MN, Parichy DM.

Methods Cell Biol. 2016;134:587-607. doi: 10.1016/bs.mcb.2015.12.001. Epub 2016 Feb 28.


The gar is a fish... is a bird... is a mammal?

Parichy DM.

Nat Genet. 2016 Apr;48(4):344-5. doi: 10.1038/ng.3532.


Long-distance communication by specialized cellular projections during pigment pattern development and evolution.

Eom DS, Bain EJ, Patterson LB, Grout ME, Parichy DM.

Elife. 2015 Dec 23;4. pii: e12401. doi: 10.7554/eLife.12401.


Advancing biology through a deeper understanding of zebrafish ecology and evolution.

Parichy DM.

Elife. 2015 Mar 25;4. doi: 10.7554/eLife.05635. Review.


Origins of adult pigmentation: diversity in pigment stem cell lineages and implications for pattern evolution.

Parichy DM, Spiewak JE.

Pigment Cell Melanoma Res. 2015 Jan;28(1):31-50. doi: 10.1111/pcmr.12332. Epub 2014 Dec 16. Review.


Thyroid hormone-dependent adult pigment cell lineage and pattern in zebrafish.

McMenamin SK, Bain EJ, McCann AE, Patterson LB, Eom DS, Waller ZP, Hamill JC, Kuhlman JA, Eisen JS, Parichy DM.

Science. 2014 Sep 12;345(6202):1358-61. doi: 10.1126/science.1256251. Epub 2014 Aug 28.


Tetraspanin 3c requirement for pigment cell interactions and boundary formation in zebrafish adult pigment stripes.

Inoue S, Kondo S, Parichy DM, Watanabe M.

Pigment Cell Melanoma Res. 2014 Mar;27(2):190-200.


Involvement of Delta/Notch signaling in zebrafish adult pigment stripe patterning.

Hamada H, Watanabe M, Lau HE, Nishida T, Hasegawa T, Parichy DM, Kondo S.

Development. 2014 Jan;141(2):318-24. doi: 10.1242/dev.099804. Epub 2013 Dec 4. Erratum in: Development. 2014 Mar;141(6):1418.


Interactions with iridophores and the tissue environment required for patterning melanophores and xanthophores during zebrafish adult pigment stripe formation.

Patterson LB, Parichy DM.

PLoS Genet. 2013 May;9(5):e1003561. doi: 10.1371/journal.pgen.1003561. Epub 2013 May 30.


Dwarfism and increased adiposity in the gh1 mutant zebrafish vizzini.

McMenamin SK, Minchin JE, Gordon TN, Rawls JF, Parichy DM.

Endocrinology. 2013 Apr;154(4):1476-87. doi: 10.1210/en.2012-1734. Epub 2013 Mar 1.


Metamorphosis in teleosts.

McMenamin SK, Parichy DM.

Curr Top Dev Biol. 2013;103:127-65. doi: 10.1016/B978-0-12-385979-2.00005-8. Review.


Melanophore migration and survival during zebrafish adult pigment stripe development require the immunoglobulin superfamily adhesion molecule Igsf11.

Eom DS, Inoue S, Patterson LB, Gordon TN, Slingwine R, Kondo S, Watanabe M, Parichy DM.

PLoS Genet. 2012;8(8):e1002899. doi: 10.1371/journal.pgen.1002899. Epub 2012 Aug 16.


Post-embryonic nerve-associated precursors to adult pigment cells: genetic requirements and dynamics of morphogenesis and differentiation.

Budi EH, Patterson LB, Parichy DM.

PLoS Genet. 2011 May;7(5):e1002044. doi: 10.1371/journal.pgen.1002044. Epub 2011 May 19.


Evidence for a core gut microbiota in the zebrafish.

Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K, Rawls JF.

ISME J. 2011 Oct;5(10):1595-608. doi: 10.1038/ismej.2011.38. Epub 2011 Apr 7.


trpm7 regulation of in vivo cation homeostasis and kidney function involves stanniocalcin 1 and fgf23.

Elizondo MR, Budi EH, Parichy DM.

Endocrinology. 2010 Dec;151(12):5700-9. doi: 10.1210/en.2010-0853. Epub 2010 Sep 29.


Defective adult oligodendrocyte and Schwann cell development, pigment pattern, and craniofacial morphology in puma mutant zebrafish having an alpha tubulin mutation.

Larson TA, Gordon TN, Lau HE, Parichy DM.

Dev Biol. 2010 Oct 15;346(2):296-309. doi: 10.1016/j.ydbio.2010.07.035. Epub 2010 Aug 5.


Interplay between Foxd3 and Mitf regulates cell fate plasticity in the zebrafish neural crest.

Curran K, Lister JA, Kunkel GR, Prendergast A, Parichy DM, Raible DW.

Dev Biol. 2010 Aug 1;344(1):107-18. doi: 10.1016/j.ydbio.2010.04.023. Epub 2010 May 9.


Critical early roles for col27a1a and col27a1b in zebrafish notochord morphogenesis, vertebral mineralization and post-embryonic axial growth.

Christiansen HE, Lang MR, Pace JM, Parichy DM.

PLoS One. 2009 Dec 29;4(12):e8481. doi: 10.1371/journal.pone.0008481.


Basonuclin-2 requirements for zebrafish adult pigment pattern development and female fertility.

Lang MR, Patterson LB, Gordon TN, Johnson SL, Parichy DM.

PLoS Genet. 2009 Nov;5(11):e1000744. doi: 10.1371/journal.pgen.1000744. Epub 2009 Nov 26.


Normal table of postembryonic zebrafish development: staging by externally visible anatomy of the living fish.

Parichy DM, Elizondo MR, Mills MG, Gordon TN, Engeszer RE.

Dev Dyn. 2009 Dec;238(12):2975-3015. doi: 10.1002/dvdy.22113.


Defects in ErbB-dependent establishment of adult melanocyte stem cells reveal independent origins for embryonic and regeneration melanocytes.

Hultman KA, Budi EH, Teasley DC, Gottlieb AY, Parichy DM, Johnson SL.

PLoS Genet. 2009 Jul;5(7):e1000544. doi: 10.1371/journal.pgen.1000544. Epub 2009 Jul 3.


Animal pigment pattern: an integrative model system for studying the development, evolution, and regeneration of form.

Parichy DM.

Semin Cell Dev Biol. 2009 Feb;20(1):63-4. doi: 10.1016/j.semcdb.2008.12.010. Epub 2008 Dec 25. No abstract available.


Research implications of pigment biology in zebrafish.

Ekker SC, Parichy DM, Cheng KC.

Zebrafish. 2008 Dec;5(4):233-5. doi: 10.1089/zeb.2008.9981. No abstract available.


Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio.

Engeszer RE, Barbiano LA, Ryan MJ, Parichy DM.

Anim Behav. 2007 Nov;74(5):1269-1275.


Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation.

Budi EH, Patterson LB, Parichy DM.

Development. 2008 Aug;135(15):2603-14. doi: 10.1242/dev.019299. Epub 2008 May 28.


Special feature--roundtable discussion. Fish models for studying adaptive evolution and speciation.

Kocher TD, Jeffery WR, Parichy DM, Peichel CL, Streelman JT, Thorgaard GH.

Zebrafish. 2005;2(3):147-56. doi: 10.1089/zeb.2005.2.147.


Sex-specific perceptual spaces for a vertebrate basal social aggregative behavior.

Engeszer RE, Wang G, Ryan MJ, Parichy DM.

Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):929-33. doi: 10.1073/pnas.0708778105. Epub 2008 Jan 16.


Zebrafish in the wild: a review of natural history and new notes from the field.

Engeszer RE, Patterson LB, Rao AA, Parichy DM.

Zebrafish. 2007 Spring;4(1):21-40. Review.


Homology and the evolution of novelty during Danio adult pigment pattern development.

Parichy DM.

J Exp Zool B Mol Dev Evol. 2007 Sep 15;308(5):578-90. Review.


Evolution of danio pigment pattern development.

Parichy DM.

Heredity (Edinb). 2006 Sep;97(3):200-10. Epub 2006 Jul 12. Review.


Defective skeletogenesis with kidney stone formation in dwarf zebrafish mutant for trpm7.

Elizondo MR, Arduini BL, Paulsen J, MacDonald EL, Sabel JL, Henion PD, Cornell RA, Parichy DM.

Curr Biol. 2005 Apr 12;15(7):667-71.


Evolutionary diversification of pigment pattern in Danio fishes: differential fms dependence and stripe loss in D. albolineatus.

Quigley IK, Manuel JL, Roberts RA, Nuckels RJ, Herrington ER, MacDonald EL, Parichy DM.

Development. 2005 Jan;132(1):89-104. Epub 2004 Nov 24.


Pigment pattern evolution by differential deployment of neural crest and post-embryonic melanophore lineages in Danio fishes.

Quigley IK, Turner JM, Nuckels RJ, Manuel JL, Budi EH, MacDonald EL, Parichy DM.

Development. 2004 Dec;131(24):6053-69. Epub 2004 Nov 10.


From biomedicine to natural history research: EST resources for ambystomatid salamanders.

Putta S, Smith JJ, Walker JA, Rondet M, Weisrock DW, Monaghan J, Samuels AK, Kump K, King DC, Maness NJ, Habermann B, Tanaka E, Bryant SV, Gardiner DM, Parichy DM, Voss SR.

BMC Genomics. 2004 Aug 13;5(1):54.


Learned social preference in zebrafish.

Engeszer RE, Ryan MJ, Parichy DM.

Curr Biol. 2004 May 25;14(10):881-4.


Pigment patterns: fish in stripes and spots.

Parichy DM.

Curr Biol. 2003 Dec 16;13(24):R947-50. Review. No abstract available.

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