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Items: 50

1.

Sexual Dichromatism Drives Diversification within a Major Radiation of African Amphibians.

Portik DM, Bell RC, Blackburn DC, Bauer AM, Barratt CD, Branch WR, Burger M, Channing A, Colston TJ, Conradie W, Dehling JM, Drewes RC, Ernst R, Greenbaum E, Gvoždík V, Harvey J, Hillers A, Hirschfeld M, Jongsma GFM, Kielgast J, Kouete MT, Lawson LP, Leaché AD, Loader SP, Lötters S, Meijden AV, Menegon M, Müller S, Nagy ZT, Ofori-Boateng C, Ohler A, Papenfuss TJ, Rößler D, Sinsch U, Rödel MO, Veith M, Vindum J, Zassi-Boulou AG, McGuire JA.

Syst Biol. 2019 Apr 23. pii: syz023. doi: 10.1093/sysbio/syz023. [Epub ahead of print]

PMID:
31140573
2.

A molecular phylogenetic hypothesis for the Asian agamid lizard genus Phrynocephalus reveals discrete biogeographic clades implicated by plate tectonics.

Macey JR, Schulte JAI, Ananjeva NB, Dyke ETV, Wang Y, Orlov N, Shafiei S, Robinson MD, Dujsebayeva T, Freund GS, Fischer CM, Liu D, Papenfuss TJ.

Zootaxa. 2018 Sep 3;4467(1):1-81. doi: 10.11646/zootaxa.4467.1.1.

PMID:
30313432
3.

The Chinese giant salamander exemplifies the hidden extinction of cryptic species.

Yan F, Lü J, Zhang B, Yuan Z, Zhao H, Huang S, Wei G, Mi X, Zou D, Xu W, Chen S, Wang J, Xie F, Wu M, Xiao H, Liang Z, Jin J, Wu S, Xu C, Tapley B, Turvey ST, Papenfuss TJ, Cunningham AA, Murphy RW, Zhang Y, Che J.

Curr Biol. 2018 May 21;28(10):R590-R592. doi: 10.1016/j.cub.2018.04.004.

4.

Resolving species delimitation within the genus Bunopus Blanford, 1874 (Squamata: Gekkonidae) in Iran using DNA barcoding approach.

Khosravani A, Rastegar-Pouyani E, Rastegar-Pouyani N, Oraie H, Papenfuss TJ.

Zootaxa. 2017 Dec 19;4365(4):467-479. doi: 10.11646/zootaxa.4365.4.6.

PMID:
29686200
5.

Corrigendum to "A novel multilocus phylogenetic estimation reveals unrecognized diversity in Asian horned toads, genus Megophrys sensu lato (Anura: Megophryidae)". [Mol. Phylogen. Evol. 106 (2017) 28-43].

Chen JM, Zhou WW, Poyarkov NA Jr, Stuart BL, Brown RM, Lathrop A, Wang YY, Yuan ZY, Jiang K, Hou M, Chen HM, Suwannapoom C, Nguyen SN, Duong TV, Papenfuss TJ, Murphy RW, Zhang YP, Che J.

Mol Phylogenet Evol. 2017 Apr;109:466. doi: 10.1016/j.ympev.2016.11.019. Epub 2016 Dec 1. No abstract available.

PMID:
27916612
6.

A novel multilocus phylogenetic estimation reveals unrecognized diversity in Asian horned toads, genus Megophrys sensu lato (Anura: Megophryidae).

Chen JM, Zhou WW, Poyarkov NA Jr, Stuart BL, Brown RM, Lathrop A, Wang YY, Yuan ZY, Jiang K, Hou M, Chen HM, Suwannapoom C, Nguyen SN, Duong TV, Papenfuss TJ, Murphy RW, Zhang YP, Che J.

Mol Phylogenet Evol. 2017 Jan;106:28-43. doi: 10.1016/j.ympev.2016.09.004. Epub 2016 Sep 10. Erratum in: Mol Phylogenet Evol. 2017 Apr;109 :466.

PMID:
27622725
7.

Eye and pit size are inversely correlated in crotalinae: Implications for selection pressure relaxation.

Liu Y, Chen Q, Papenfuss TJ, Lu F, Tang Y.

J Morphol. 2016 Jan;277(1):107-17. doi: 10.1002/jmor.20483. Epub 2015 Oct 7.

PMID:
26442780
9.

A phylogenomic analysis of turtles.

Crawford NG, Parham JF, Sellas AB, Faircloth BC, Glenn TC, Papenfuss TJ, Henderson JB, Hansen MH, Simison WB.

Mol Phylogenet Evol. 2015 Feb;83:250-7. doi: 10.1016/j.ympev.2014.10.021. Epub 2014 Nov 4.

PMID:
25450099
10.

Phylogenetic relationships of Semaphore geckos (Squamata: Sphaerodactylidae: Pristurus) with an assessment of the taxonomy of Pristurus rupestris.

Badiane A, Garcia-Porta J, Červenka J, Kratochvíl L, Sindaco R, Robinson MD, Morales H, Mazuch T, Price T, Amat F, Shobrak MY, Wilms T, Simó-Riudalbas M, Ahmadzadeh F, Papenfuss TJ, Cluchier A, Viglione J, Carranza S.

Zootaxa. 2014 Jul 9;3835(1):33-58. doi: 10.11646/zootaxa.3835.1.2.

PMID:
25081434
11.

A hybrid phylogenetic-phylogenomic approach for species tree estimation in African Agama lizards with applications to biogeography, character evolution, and diversification.

Leaché AD, Wagner P, Linkem CW, Böhme W, Papenfuss TJ, Chong RA, Lavin BR, Bauer AM, Nielsen SV, Greenbaum E, Rödel MO, Schmitz A, LeBreton M, Ineich I, Chirio L, Ofori-Boateng C, Eniang EA, Baha El Din S, Lemmon AR, Burbrink FT.

Mol Phylogenet Evol. 2014 Oct;79:215-30. doi: 10.1016/j.ympev.2014.06.013. Epub 2014 Jun 25.

PMID:
24973715
12.

Genetic introgression and hybridization in Antillean freshwater turtles (Trachemys) revealed by coalescent analyses of mitochondrial and cloned nuclear markers.

Parham JF, Papenfuss TJ, Dijk PP, Wilson BS, Marte C, Schettino LR, Brian Simison W.

Mol Phylogenet Evol. 2013 Apr;67(1):176-87. doi: 10.1016/j.ympev.2013.01.004. Epub 2013 Jan 23.

13.

Molecular phylogenetic reconstruction of the endemic Asian salamander family Hynobiidae (Amphibia, Caudata).

Weisrock DW, Macey JR, Matsui M, Mulcahy DG, Papenfuss TJ.

Zootaxa. 2013;3626:77-93.

PMID:
26176127
14.

Monitors cross the Red Sea: the biogeographic history of Varanus yemenensis.

Portik DM, Papenfuss TJ.

Mol Phylogenet Evol. 2012 Jan;62(1):561-5. doi: 10.1016/j.ympev.2011.09.024. Epub 2011 Oct 8.

PMID:
22004664
15.

Phylogeny, biogeography, and display evolution in the tree and brush lizard genus Urosaurus (Squamata: Phrynosomatidae).

Feldman CR, Flores-Villela O, Papenfuss TJ.

Mol Phylogenet Evol. 2011 Dec;61(3):714-25. doi: 10.1016/j.ympev.2011.08.008. Epub 2011 Aug 19.

PMID:
21871967
16.

Phylogeny and divergence times of some racerunner lizards (Lacertidae: Eremias) inferred from mitochondrial 16S rRNA gene segments.

Guo X, Dai X, Chen D, Papenfuss TJ, Ananjeva NB, Melnikov DA, Wang Y.

Mol Phylogenet Evol. 2011 Nov;61(2):400-12. doi: 10.1016/j.ympev.2011.06.022. Epub 2011 Jul 13.

PMID:
21767655
17.

Molecular systematics of Stenodactylus (Gekkonidae), an Afro-Arabian gecko species complex.

Fujita MK, Papenfuss TJ.

Mol Phylogenet Evol. 2011 Jan;58(1):71-5. doi: 10.1016/j.ympev.2010.10.014. Epub 2010 Oct 28.

PMID:
21035555
18.

The impact of conservation on the status of the world's vertebrates.

Hoffmann M, Hilton-Taylor C, Angulo A, Böhm M, Brooks TM, Butchart SH, Carpenter KE, Chanson J, Collen B, Cox NA, Darwall WR, Dulvy NK, Harrison LR, Katariya V, Pollock CM, Quader S, Richman NI, Rodrigues AS, Tognelli MF, Vié JC, Aguiar JM, Allen DJ, Allen GR, Amori G, Ananjeva NB, Andreone F, Andrew P, Aquino Ortiz AL, Baillie JE, Baldi R, Bell BD, Biju SD, Bird JP, Black-Decima P, Blanc JJ, Bolaños F, Bolivar-G W, Burfield IJ, Burton JA, Capper DR, Castro F, Catullo G, Cavanagh RD, Channing A, Chao NL, Chenery AM, Chiozza F, Clausnitzer V, Collar NJ, Collett LC, Collette BB, Cortez Fernandez CF, Craig MT, Crosby MJ, Cumberlidge N, Cuttelod A, Derocher AE, Diesmos AC, Donaldson JS, Duckworth JW, Dutson G, Dutta SK, Emslie RH, Farjon A, Fowler S, Freyhof J, Garshelis DL, Gerlach J, Gower DJ, Grant TD, Hammerson GA, Harris RB, Heaney LR, Hedges SB, Hero JM, Hughes B, Hussain SA, Icochea M J, Inger RF, Ishii N, Iskandar DT, Jenkins RK, Kaneko Y, Kottelat M, Kovacs KM, Kuzmin SL, La Marca E, Lamoreux JF, Lau MW, Lavilla EO, Leus K, Lewison RL, Lichtenstein G, Livingstone SR, Lukoschek V, Mallon DP, McGowan PJ, McIvor A, Moehlman PD, Molur S, Muñoz Alonso A, Musick JA, Nowell K, Nussbaum RA, Olech W, Orlov NL, Papenfuss TJ, Parra-Olea G, Perrin WF, Polidoro BA, Pourkazemi M, Racey PA, Ragle JS, Ram M, Rathbun G, Reynolds RP, Rhodin AG, Richards SJ, Rodríguez LO, Ron SR, Rondinini C, Rylands AB, Sadovy de Mitcheson Y, Sanciangco JC, Sanders KL, Santos-Barrera G, Schipper J, Self-Sullivan C, Shi Y, Shoemaker A, Short FT, Sillero-Zubiri C, Silvano DL, Smith KG, Smith AT, Snoeks J, Stattersfield AJ, Symes AJ, Taber AB, Talukdar BK, Temple HJ, Timmins R, Tobias JA, Tsytsulina K, Tweddle D, Ubeda C, Valenti SV, van Dijk PP, Veiga LM, Veloso A, Wege DC, Wilkinson M, Williamson EA, Xie F, Young BE, Akçakaya HR, Bennun L, Blackburn TM, Boitani L, Dublin HT, da Fonseca GA, Gascon C, Lacher TE Jr, Mace GM, Mainka SA, McNeely JA, Mittermeier RA, Reid GM, Rodriguez JP, Rosenberg AA, Samways MJ, Smart J, Stein BA, Stuart SN.

Science. 2010 Dec 10;330(6010):1503-9. doi: 10.1126/science.1194442. Epub 2010 Oct 26.

19.

Availability of new Bayesian-delimited gecko names and the importance of character-based species descriptions.

Bauer AM, Parham JF, Brown RM, Stuart BL, Grismer L, Papenfuss TJ, Böhme W, Savage JM, Carranza S, Grismer JL, Wagner P, Schmitz A, Ananjeva NB, Inger RF.

Proc Biol Sci. 2011 Feb 22;278(1705):490-2; discussion 493-5. doi: 10.1098/rspb.2010.1330. Epub 2010 Oct 20. No abstract available.

20.

Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia.

Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, Wake DB, Zhang YP.

Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13765-70. doi: 10.1073/pnas.1008415107. Epub 2010 Jul 19.

21.

Deep genealogical lineages in the widely distributed African helmeted terrapin: evidence from mitochondrial and nuclear DNA (Testudines: Pelomedusidae: Pelomedusa subrufa).

Vargas-Ramírez M, Vences M, Branch WR, Daniels SR, Glaw F, Hofmeyr MD, Kuchling G, Maran J, Papenfuss TJ, Siroký P, Vieites DR, Fritz U.

Mol Phylogenet Evol. 2010 Jul;56(1):428-40. doi: 10.1016/j.ympev.2010.03.019. Epub 2010 Mar 21.

PMID:
20332032
22.

Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma).

Leaché AD, Koo MS, Spencer CL, Papenfuss TJ, Fisher RN, McGuire JA.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12418-23. doi: 10.1073/pnas.0906380106. Epub 2009 Jul 22.

23.

Dramatic declines in neotropical salamander populations are an important part of the global amphibian crisis.

Rovito SM, Parra-Olea G, Vásquez-Almazán CR, Papenfuss TJ, Wake DB.

Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3231-6. doi: 10.1073/pnas.0813051106. Epub 2009 Feb 9.

24.

Phylogeny of the Asian spiny frog tribe Paini (Family Dicroglossidae) sensu Dubois.

Che J, Hu JS, Zhou WW, Murphy RW, Papenfuss TJ, Chen MY, Rao DQ, Li PP, Zhang YP.

Mol Phylogenet Evol. 2009 Jan;50(1):59-73. doi: 10.1016/j.ympev.2008.10.007. Epub 2008 Oct 21.

PMID:
18992827
25.

Socotra Island the forgotten fragment of Gondwana: unmasking chameleon lizard history with complete mitochondrial genomic data.

Macey JR, Kuehl JV, Larson A, Robinson MD, Ugurtas IH, Ananjeva NB, Rahman H, Javed HI, Osman RM, Doumma A, Papenfuss TJ.

Mol Phylogenet Evol. 2008 Dec;49(3):1015-8. doi: 10.1016/j.ympev.2008.08.024. Epub 2008 Sep 7. No abstract available.

PMID:
18832039
26.

Phylogeny and biogeography of the family Salamandridae (Amphibia: Caudata) inferred from complete mitochondrial genomes.

Zhang P, Papenfuss TJ, Wake MH, Qu L, Wake DB.

Mol Phylogenet Evol. 2008 Nov;49(2):586-97. doi: 10.1016/j.ympev.2008.08.020. Epub 2008 Sep 3.

PMID:
18801447
27.

Introduced delicacy or native species? A natural origin of Bermudian terrapins supported by fossil and genetic data.

Parham JF, Outerbridge ME, Stuart BL, Wingate DB, Erlenkeuser H, Papenfuss TJ.

Biol Lett. 2008 Apr 23;4(2):216-9. doi: 10.1098/rsbl.2007.0599.

28.

Assembly of the eastern North American herpetofauna: new evidence from lizards and frogs.

Macey JR, Schulte JA 2nd, Strasburg JL, Brisson JA, Larson A, Ananjeva NB, Wang Y, Parham JF, Papenfuss TJ.

Biol Lett. 2006 Sep 22;2(3):388-92.

29.

Evolution of mitochondrial relationships and biogeography of Palearctic green toads (Bufo viridis subgroup) with insights in their genomic plasticity.

Stöck M, Moritz C, Hickerson M, Frynta D, Dujsebayeva T, Eremchenko V, Macey JR, Papenfuss TJ, Wake DB.

Mol Phylogenet Evol. 2006 Dec;41(3):663-89. Epub 2006 Jun 2.

PMID:
16919484
30.

A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata).

Weisrock DW, Papenfuss TJ, Macey JR, Litvinchuk SN, Polymeni R, Ugurtas IH, Zhao E, Jowkar H, Larson A.

Mol Phylogenet Evol. 2006 Nov;41(2):368-83. Epub 2006 May 19.

PMID:
16815049
31.

The complete mitochondrial genome of an agamid lizard from the Afro-Asian subfamily agaminae and the phylogenetic position of Bufoniceps and Xenagama.

Macey JR, Schulte JA 2nd, Fong JJ, Das I, Papenfuss TJ.

Mol Phylogenet Evol. 2006 Jun;39(3):881-6. No abstract available.

PMID:
16701179
32.

Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae).

Zhang P, Chen YQ, Zhou H, Liu YF, Wang XL, Papenfuss TJ, Wake DB, Qu LH.

Proc Natl Acad Sci U S A. 2006 May 9;103(19):7360-5. Epub 2006 Apr 28.

33.

A genetic perspective on the geographic association of taxa among arid North American lizards of the Sceloporus magister complex (Squamata: Iguanidae: Phrynosomatinae).

Schulte JA 2nd, Macey JR, Papenfuss TJ.

Mol Phylogenet Evol. 2006 Jun;39(3):873-80. Epub 2006 Mar 31. No abstract available.

PMID:
16580231
34.

The phylogeny of Mediterranean tortoises and their close relatives based on complete mitochondrial genome sequences from museum specimens.

Parham JF, Macey JR, Papenfuss TJ, Feldman CR, Türkozan O, Polymeni R, Boore J.

Mol Phylogenet Evol. 2006 Jan;38(1):50-64. Epub 2005 Sep 16.

PMID:
16150614
35.

The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii.

Macey JR, Fong JJ, Kuehl JV, Shafiei S, Ananjeva NB, Papenfuss TJ, Boore JL.

Mol Phylogenet Evol. 2005 Jul;36(1):188-93. No abstract available.

PMID:
15904865
36.

Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genomic sequences.

Macey JR, Papenfuss TJ, Kuehl JV, Fourcade HM, Boore JL.

Mol Phylogenet Evol. 2004 Oct;33(1):22-31.

PMID:
15324836
37.

A phylogeny of Chinese species in the genus Phrynocephalus (Agamidae) inferred from mitochondrial DNA sequences.

Pang J, Wang Y, Zhong Y, Hoelzel AR, Papenfuss TJ, Zeng X, Ananjeva NB, Zhang YP.

Mol Phylogenet Evol. 2003 Jun;27(3):398-409.

PMID:
12742745
38.

Evaluating trans-tethys migration: an example using acrodont lizard phylogenetics.

Macey JR, Schulte JA 2nd, Larson A, Ananjeva NB, Wang Y, Pethiyagoda R, Rastegar-Pouyani N, Papenfuss TJ.

Syst Biol. 2000 Jun;49(2):233-56.

PMID:
12118407
40.

Mitochondrial DNA-Based phylogeography of North American rubber boas, Charina bottae (Serpentes: Boidae).

Rodríguez-Robles JA, Stewart GR, Papenfuss TJ.

Mol Phylogenet Evol. 2001 Feb;18(2):227-37.

PMID:
11161758
41.

Testing hypotheses of vicariance in the agamid lizard Laudakia caucasia from mountain ranges on the northern Iranian Plateau.

Macey JR, Schulte JA 2nd, Kami HG, Ananjeva NB, Larson A, Papenfuss TJ.

Mol Phylogenet Evol. 2000 Mar;14(3):479-83. No abstract available.

PMID:
10712852
42.

Molecular phylogenetics, tRNA evolution, and historical biogeography in anguid lizards and related taxonomic families.

Macey JR, Schulte JA 2nd, Larson A, Tuniyev BS, Orlov N, Papenfuss TJ.

Mol Phylogenet Evol. 1999 Aug;12(3):250-72.

PMID:
10413621
44.

Molecular tests of phylogenetic taxonomies: a general procedure and example using four subfamilies of the lizard family Iguanidae.

Schulte JA, Macey JR, Larson A, Papenfuss TJ.

Mol Phylogenet Evol. 1998 Dec;10(3):367-76.

PMID:
10051389
45.

Phylogenetic relationships among Agamid lizards of the Laudakia caucasia species group: testing hypotheses of biogeographic fragmentation and an area cladogram for the Iranian Plateau.

Macey JR, Schulte JA 2nd, Ananjeva NB, Larson A, Rastegar-Pouyani N, Shammakov SM, Papenfuss TJ.

Mol Phylogenet Evol. 1998 Aug;10(1):118-31.

PMID:
9751922
46.

Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement.

Macey JR, Schulte JA 2nd, Larson A, Papenfuss TJ.

Mol Biol Evol. 1998 Jan;15(1):71-5.

PMID:
9491606
47.

Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: a case of vicariance and dispersal.

Macey JR, Schulte JA 2nd, Larson A, Fang Z, Wang Y, Tuniyev BS, Papenfuss TJ.

Mol Phylogenet Evol. 1998 Feb;9(1):80-7.

PMID:
9479697
48.

Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards.

Macey JR, Larson A, Ananjeva NB, Papenfuss TJ.

J Mol Evol. 1997 Jun;44(6):660-74.

PMID:
9169559
49.

Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome.

Macey JR, Larson A, Ananjeva NB, Fang Z, Papenfuss TJ.

Mol Biol Evol. 1997 Jan;14(1):91-104.

PMID:
9000757
50.

Replication slippage may cause parallel evolution in the secondary structures of mitochondrial transfer RNAs.

Macey JR, Larson A, Ananjeva NB, Papenfuss TJ.

Mol Biol Evol. 1997 Jan;14(1):30-9.

PMID:
9000751

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