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Items: 48

1.

A conserved RNA seed-pairing domain directs small RNA-mediated stress resistance in enterobacteria.

Peschek N, Hoyos M, Herzog R, Förstner KU, Papenfort K.

EMBO J. 2019 Aug 15;38(16):e101650. doi: 10.15252/embj.2019101650. Epub 2019 Jul 17.

2.

Vibrio cholerae filamentation promotes chitin surface attachment at the expense of competition in biofilms.

Wucher BR, Bartlett TM, Hoyos M, Papenfort K, Persat A, Nadell CD.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14216-14221. doi: 10.1073/pnas.1819016116. Epub 2019 Jun 25.

3.

mRNA dynamics and alternative conformations adopted under low and high arginine concentrations control polyamine biosynthesis in Salmonella.

Ben-Zvi T, Pushkarev A, Seri H, Elgrably-Weiss M, Papenfort K, Altuvia S.

PLoS Genet. 2019 Feb 11;15(2):e1007646. doi: 10.1371/journal.pgen.1007646. eCollection 2019 Feb.

4.

Three autoinducer molecules act in concert to control virulence gene expression in Vibrio cholerae.

Herzog R, Peschek N, Fröhlich KS, Schumacher K, Papenfort K.

Nucleic Acids Res. 2019 Apr 8;47(6):3171-3183. doi: 10.1093/nar/gky1320.

5.

Transcriptomic Approaches for Studying Quorum Sensing in Vibrio cholerae.

Herzog R, Papenfort K.

Methods Enzymol. 2018;612:303-342. doi: 10.1016/bs.mie.2018.09.008. Epub 2018 Oct 24.

PMID:
30502947
6.

Cross-Regulation between Bacteria and Phages at a Posttranscriptional Level.

Altuvia S, Storz G, Papenfort K.

Microbiol Spectr. 2018 Jul;6(4). doi: 10.1128/microbiolspec.RWR-0027-2018. Review.

7.

Erratum: A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation.

Papenfort K, Silpe JE, Schramma KR, Cong JP, Seyedsayamdost MR, Bassler BL.

Nat Chem Biol. 2017 Sep 19;13(10):1137. doi: 10.1038/nchembio1017-1137a. No abstract available.

PMID:
28926554
8.

Leaderless secreted peptide signaling molecule alters global gene expression and increases virulence of a human bacterial pathogen.

Do H, Makthal N, VanderWal AR, Rettel M, Savitski MM, Peschek N, Papenfort K, Olsen RJ, Musser JM, Kumaraswami M.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8498-E8507. doi: 10.1073/pnas.1705972114. Epub 2017 Sep 18.

9.

Erratum: A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation.

Papenfort K, Silpe JE, Schramma KR, Cong JP, Seyedsayamdost MR, Bassler BL.

Nat Chem Biol. 2017 May 17;13(6):691. doi: 10.1038/nchembio0617-691a. No abstract available.

PMID:
28514430
10.

Correction: Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries.

Hershko-Shalev T, Odenheimer-Bergman A, Elgrably-Weiss M, Ben-Zvi T, Govindarajan S, Seri H, Papenfort K, Vogel J, Altuvia S.

PLoS Genet. 2017 Apr 14;13(4):e1006725. doi: 10.1371/journal.pgen.1006725. eCollection 2017 Apr.

11.

A Vibrio cholerae autoinducer-receptor pair that controls biofilm formation.

Papenfort K, Silpe JE, Schramma KR, Cong JP, Seyedsayamdost MR, Bassler BL.

Nat Chem Biol. 2017 May;13(5):551-557. doi: 10.1038/nchembio.2336. Epub 2017 Mar 20. Erratum in: Nat Chem Biol. 2017 May 17;13(6):691. Nat Chem Biol. 2017 Sep 19;13(10 ):1137. Nat Chem Biol. 2017 Sep 19;13(10 ):1137.

12.

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J.

Mol Cell. 2017 Jan 5;65(1):39-51. doi: 10.1016/j.molcel.2016.11.002.

13.

Quorum sensing signal-response systems in Gram-negative bacteria.

Papenfort K, Bassler BL.

Nat Rev Microbiol. 2016 Aug 11;14(9):576-88. doi: 10.1038/nrmicro.2016.89. Review.

14.

The target spectrum of SdsR small RNA in Salmonella.

Fröhlich KS, Haneke K, Papenfort K, Vogel J.

Nucleic Acids Res. 2016 Dec 1;44(21):10406-10422. Epub 2016 Jul 12.

15.

Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens.

Fröhlich KS, Papenfort K.

Mol Microbiol. 2016 Sep;101(5):701-13. doi: 10.1111/mmi.13428. Epub 2016 Jun 16. Review.

16.

Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries.

Hershko-Shalev T, Odenheimer-Bergman A, Elgrably-Weiss M, Ben-Zvi T, Govindarajan S, Seri H, Papenfort K, Vogel J, Altuvia S.

PLoS Genet. 2016 Apr 8;12(4):e1005975. doi: 10.1371/journal.pgen.1005975. eCollection 2016 Apr. Erratum in: PLoS Genet. 2017 Apr 14;13(4):e1006725.

17.

Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella.

Papenfort K, Espinosa E, Casadesús J, Vogel J.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4772-81. doi: 10.1073/pnas.1507825112. Epub 2015 Aug 11.

18.

Target activation by regulatory RNAs in bacteria.

Papenfort K, Vanderpool CK.

FEMS Microbiol Rev. 2015 May;39(3):362-78. doi: 10.1093/femsre/fuv016. Epub 2015 Apr 30. Review.

19.

The VrrA sRNA controls a stationary phase survival factor Vrp of Vibrio cholerae.

Sabharwal D, Song T, Papenfort K, Wai SN.

RNA Biol. 2015;12(2):186-96. doi: 10.1080/15476286.2015.1017211.

20.

Differential RNA-seq of Vibrio cholerae identifies the VqmR small RNA as a regulator of biofilm formation.

Papenfort K, Förstner KU, Cong JP, Sharma CM, Bassler BL.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E766-75. doi: 10.1073/pnas.1500203112. Epub 2015 Feb 2.

21.

A qrr noncoding RNA deploys four different regulatory mechanisms to optimize quorum-sensing dynamics.

Feng L, Rutherford ST, Papenfort K, Bagert JD, van Kessel JC, Tirrell DA, Wingreen NS, Bassler BL.

Cell. 2015 Jan 15;160(1-2):228-40. doi: 10.1016/j.cell.2014.11.051. Epub 2015 Jan 8.

22.

Small RNA functions in carbon metabolism and virulence of enteric pathogens.

Papenfort K, Vogel J.

Front Cell Infect Microbiol. 2014 Jul 15;4:91. doi: 10.3389/fcimb.2014.00091. eCollection 2014. Review.

23.

A small RNA activates CFA synthase by isoform-specific mRNA stabilization.

Fröhlich KS, Papenfort K, Fekete A, Vogel J.

EMBO J. 2013 Nov 13;32(22):2963-79. doi: 10.1038/emboj.2013.222. Epub 2013 Oct 18.

24.

Comparative genomics boosts target prediction for bacterial small RNAs.

Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3487-96. doi: 10.1073/pnas.1303248110. Epub 2013 Aug 26.

25.

Functional determinants of the quorum-sensing non-coding RNAs and their roles in target regulation.

Shao Y, Feng L, Rutherford ST, Papenfort K, Bassler BL.

EMBO J. 2013 Jul 31;32(15):2158-71. doi: 10.1038/emboj.2013.155. Epub 2013 Jul 9.

26.

Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis.

Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J.

Cell. 2013 Apr 11;153(2):426-37. doi: 10.1016/j.cell.2013.03.003.

27.

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA.

Göpel Y, Papenfort K, Reichenbach B, Vogel J, Görke B.

Genes Dev. 2013 Mar 1;27(5):552-64. doi: 10.1101/gad.210112.112.

28.

An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs.

Chao Y, Papenfort K, Reinhardt R, Sharma CM, Vogel J.

EMBO J. 2012 Oct 17;31(20):4005-19. doi: 10.1038/emboj.2012.229. Epub 2012 Aug 24.

29.

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, Lucchini S, Ussery DW, Dorman CJ, Thomson NR, Vogel J, Hinton JC.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):E1277-86. doi: 10.1073/pnas.1201061109. Epub 2012 Apr 25.

30.

Superfolder GFP reporters validate diverse new mRNA targets of the classic porin regulator, MicF RNA.

Corcoran CP, Podkaminski D, Papenfort K, Urban JH, Hinton JC, Vogel J.

Mol Microbiol. 2012 May;84(3):428-45. doi: 10.1111/j.1365-2958.2012.08031.x. Epub 2012 Mar 28.

31.

The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair.

Papenfort K, Podkaminski D, Hinton JC, Vogel J.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):E757-64. doi: 10.1073/pnas.1119414109. Epub 2012 Mar 1.

32.

Hfq and Hfq-dependent small RNAs are major contributors to multicellular development in Salmonella enterica serovar Typhimurium.

Monteiro C, Papenfort K, Hentrich K, Ahmad I, Le Guyon S, Reimann R, Grantcharova N, Römling U.

RNA Biol. 2012 Apr;9(4):489-502. doi: 10.4161/rna.19682. Epub 2012 Feb 16.

PMID:
22336758
33.

A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD.

Fröhlich KS, Papenfort K, Berger AA, Vogel J.

Nucleic Acids Res. 2012 Apr;40(8):3623-40. doi: 10.1093/nar/gkr1156. Epub 2011 Dec 17.

34.

Microbes at their best: first Mol Micro Meeting Würzburg.

Böhm A, Papenfort K, Lopez D, Vogel J.

Mol Microbiol. 2011 Nov;82(4):797-806. doi: 10.1111/j.1365-2958.2011.07852.x. Epub 2011 Oct 20.

35.

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon.

Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12875-80. doi: 10.1073/pnas.1109379108. Epub 2011 Jul 18.

36.

Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA.

Sharma CM, Papenfort K, Pernitzsch SR, Mollenkopf HJ, Hinton JC, Vogel J.

Mol Microbiol. 2011 Sep;81(5):1144-65. doi: 10.1111/j.1365-2958.2011.07751.x. Epub 2011 Jul 27.

37.

Sweet business: Spot42 RNA networks with CRP to modulate catabolite repression.

Papenfort K, Vogel J.

Mol Cell. 2011 Feb 4;41(3):245-6. doi: 10.1016/j.molcel.2011.01.011.

38.

Evidence for an autonomous 5' target recognition domain in an Hfq-associated small RNA.

Papenfort K, Bouvier M, Mika F, Sharma CM, Vogel J.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20435-40. doi: 10.1073/pnas.1009784107. Epub 2010 Nov 8.

39.

Regulatory RNA in bacterial pathogens.

Papenfort K, Vogel J.

Cell Host Microbe. 2010 Jul 22;8(1):116-27. doi: 10.1016/j.chom.2010.06.008. Review.

40.

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA.

Papenfort K, Said N, Welsink T, Lucchini S, Hinton JCD, Vogel J.

Mol Microbiol. 2009 Oct;74(1):139-158. doi: 10.1111/j.1365-2958.2009.06857.x. Epub 2009 Sep 2.

41.

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation.

Pfeiffer V, Papenfort K, Lucchini S, Hinton JC, Vogel J.

Nat Struct Mol Biol. 2009 Aug;16(8):840-6. doi: 10.1038/nsmb.1631. Epub 2009 Jul 20.

PMID:
19620966
42.

Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level.

Papenfort K, Vogel J.

Res Microbiol. 2009 May;160(4):278-87. doi: 10.1016/j.resmic.2009.03.004. Epub 2009 Apr 12. Review.

PMID:
19366629
43.

Acid stress activation of the sigma(E) stress response in Salmonella enterica serovar Typhimurium.

Muller C, Bang IS, Velayudhan J, Karlinsey J, Papenfort K, Vogel J, Fang FC.

Mol Microbiol. 2009 Mar;71(5):1228-38. doi: 10.1111/j.1365-2958.2009.06597.x. Epub 2009 Jan 23.

44.

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.

Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J.

PLoS Genet. 2008 Aug 22;4(8):e1000163. doi: 10.1371/journal.pgen.1000163.

45.

Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis.

Papenfort K, Pfeiffer V, Lucchini S, Sonawane A, Hinton JC, Vogel J.

Mol Microbiol. 2008 May;68(4):890-906. doi: 10.1111/j.1365-2958.2008.06189.x. Epub 2008 Apr 8.

46.

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis.

Urban JH, Papenfort K, Thomsen J, Schmitz RA, Vogel J.

J Mol Biol. 2007 Oct 26;373(3):521-8. Epub 2007 Aug 2.

PMID:
17854828
47.

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay.

Papenfort K, Pfeiffer V, Mika F, Lucchini S, Hinton JC, Vogel J.

Mol Microbiol. 2006 Dec;62(6):1674-88.

48.

Small non-coding RNAs and the bacterial outer membrane.

Vogel J, Papenfort K.

Curr Opin Microbiol. 2006 Dec;9(6):605-11. Epub 2006 Oct 20. Review.

PMID:
17055775

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