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Items: 16

1.

The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids.

Sävilammi T, Primmer CR, Varadharajan S, Guyomard R, Guiguen Y, Sandve SR, Vøllestad LA, Papakostas S, Lien S.

G3 (Bethesda). 2019 May 7;9(5):1283-1294. doi: 10.1534/g3.118.200919.

2.

Reverse taxonomy applied to the Brachionus calyciflorus cryptic species complex: Morphometric analysis confirms species delimitations revealed by molecular phylogenetic analysis and allows the (re)description of four species.

Michaloudi E, Papakostas S, Stamou G, Neděla V, Tihlaříková E, Zhang W, Declerck SAJ.

PLoS One. 2018 Sep 20;13(9):e0203168. doi: 10.1371/journal.pone.0203168. eCollection 2018.

3.

The genome of the freshwater monogonont rotifer Brachionus calyciflorus.

Kim HS, Lee BY, Han J, Jeong CB, Hwang DS, Lee MC, Kang HM, Kim DH, Kim HJ, Papakostas S, Declerck SAJ, Choi IY, Hagiwara A, Park HG, Lee JS.

Mol Ecol Resour. 2018 May;18(3):646-655. doi: 10.1111/1755-0998.12768. Epub 2018 Mar 3.

PMID:
29451365
4.

Modularity Facilitates Flexible Tuning of Plastic and Evolutionary Gene Expression Responses during Early Divergence.

Mäkinen H, Sävilammi T, Papakostas S, Leder E, Vøllestad LA, Primmer CR.

Genome Biol Evol. 2018 Jan 1;10(1):77-93. doi: 10.1093/gbe/evx278.

5.

Integrative Taxonomy Recognizes Evolutionary Units Despite Widespread Mitonuclear Discordance: Evidence from a Rotifer Cryptic Species Complex.

Papakostas S, Michaloudi E, Proios K, Brehm M, Verhage L, Rota J, Peña C, Stamou G, Pritchard VL, Fontaneto D, Declerck SA.

Syst Biol. 2016 May;65(3):508-24. doi: 10.1093/sysbio/syw016. Epub 2016 Feb 14. Erratum in: Syst Biol. 2016 Sep;65(5):945.

PMID:
26880148
6.

Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling (Thymallus thymallus) Subpopulations Adapted to Different Thermal Environments.

Mäkinen H, Papakostas S, Vøllestad LA, Leder EH, Primmer CR.

J Hered. 2016 Jan;107(1):82-9. doi: 10.1093/jhered/esv069. Epub 2015 Aug 21.

PMID:
26297731
7.

Rapid adaptation of herbivore consumers to nutrient limitation: eco-evolutionary feedbacks to population demography and resource control.

Declerck SA, Malo AR, Diehl S, Waasdorp D, Lemmen KD, Proios K, Papakostas S.

Ecol Lett. 2015 Jun;18(6):553-62. doi: 10.1111/ele.12436. Epub 2015 Apr 27.

PMID:
25913306
8.

Updating the description and taxonomic status of Brachionus sessilis Varga, 1951 (Rotifera: Brachionidae) based on detailed morphological analysis and molecular data.

Proios K, Michaloudi E, Papakostas S, Kappas I, Vasileiadou K, Abatzopoulos TJ.

Zootaxa. 2014 Oct 17;3873(4):345-70. doi: 10.11646/zootaxa.3873.4.2.

PMID:
25544227
9.

Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions.

Papakostas S, Vøllestad LA, Bruneaux M, Aykanat T, Vanoverbeke J, Ning M, Primmer CR, Leder EH.

Nat Commun. 2014 Jun 3;5:4071. doi: 10.1038/ncomms5071.

10.

Proteome variance differences within populations of European whitefish (Coregonus lavaretus) originating from contrasting salinity environments.

Papakostas S, Vasemägi A, Himberg M, Primmer CR.

J Proteomics. 2014 Jun 13;105:144-50. doi: 10.1016/j.jprot.2013.12.019. Epub 2014 Jan 7.

PMID:
24406297
11.

Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research.

Primmer CR, Papakostas S, Leder EH, Davis MJ, Ragan MA.

Mol Ecol. 2013 Jun;22(12):3216-41. doi: 10.1111/mec.12309. Review.

PMID:
23763602
12.

A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus).

Papakostas S, Vasemägi A, Vähä JP, Himberg M, Peil L, Primmer CR.

Mol Ecol. 2012 Jul;21(14):3516-30. doi: 10.1111/j.1365-294X.2012.05553.x. Epub 2012 Apr 4.

PMID:
22486940
13.

Is polyploidy a persevering accident or an adaptive evolutionary pattern? The case of the brine shrimp Artemia.

Maniatsi S, Baxevanis AD, Kappas I, Deligiannidis P, Triantafyllidis A, Papakostas S, Bougiouklis D, Abatzopoulos TJ.

Mol Phylogenet Evol. 2011 Feb;58(2):353-64. doi: 10.1016/j.ympev.2010.11.029. Epub 2010 Dec 9.

PMID:
21145977
14.

Proteomic profiling of early life stages of European grayling (Thymallus thymallus).

Papakostas S, Vøllestad LA, Primmer CR, Leder EH.

J Proteome Res. 2010 Sep 3;9(9):4790-800. doi: 10.1021/pr100507s.

PMID:
20602527
15.

A multiplex PCR method for rapid identification of Brachionus rotifers.

Vasileiadou K, Papakostas S, Triantafyllidis A, Kappas I, Abatzopoulos TJ.

Mar Biotechnol (NY). 2009 Jan-Feb;11(1):53-61. doi: 10.1007/s10126-008-9119-4. Epub 2008 Jul 1.

PMID:
18592313
16.

Identification of cultured Brachionus rotifers based on RFLP and SSCP screening.

Papakostas S, Dooms S, Christodoulou M, Triantafyllidis A, Kappas I, Dierckens K, Bossier P, Sorgeloos P, Abatzopoulos TJ.

Mar Biotechnol (NY). 2006 Sep-Oct;8(5):547-59. Epub 2006 Jul 19.

PMID:
16841270

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