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Items: 35

1.

Impacts of Clarification Techniques on Sample Constituents and Pathogen Retention.

Armstrong CM, Gehring AG, Paoli GC, Chen CY, He Y, Capobianco JA.

Foods. 2019 Dec 3;8(12). pii: E636. doi: 10.3390/foods8120636.

2.

Incidence and Characterization of Salmonella Isolates From Raw Meat Products Sold at Small Markets in Hubei Province, China.

Zhou M, Li X, Hou W, Wang H, Paoli GC, Shi X.

Front Microbiol. 2019 Oct 4;10:2265. doi: 10.3389/fmicb.2019.02265. eCollection 2019.

3.

Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain ATCC 43888.

Uhlich GA, Paoli GC, Zhang X, Andreozzi E.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e00906-19. doi: 10.1128/MRA.00906-19.

4.

Sulfamethoxazole - Trimethoprim represses csgD but maintains virulence genes at 30°C in a clinical Escherichia coli O157:H7 isolate.

Uhlich GA, Andreozzi E, Cottrell BJ, Reichenberger ER, Zhang X, Paoli GC.

PLoS One. 2018 May 2;13(5):e0196271. doi: 10.1371/journal.pone.0196271. eCollection 2018.

5.

Influence of ethanol adaptation on Salmonella enterica serovar Enteritidis survival in acidic environments and expression of acid tolerance-related genes.

He S, Cui Y, Qin X, Zhang F, Shi C, Paoli GC, Shi X.

Food Microbiol. 2018 Jun;72:193-198. doi: 10.1016/j.fm.2017.12.005. Epub 2017 Dec 7.

PMID:
29407397
6.

Serogroup-level resolution of the "Super-7" Shiga toxin-producing Escherichia coli using nanopore single-molecule DNA sequencing.

Peritz A, Paoli GC, Chen CY, Gehring AG.

Anal Bioanal Chem. 2018 Sep;410(22):5439-5444. doi: 10.1007/s00216-018-0877-1. Epub 2018 Jan 27.

PMID:
29374775
7.

Complete Genome Sequences of Two Strains of the Meat Spoilage Bacterium Brochothrix thermosphacta Isolated from Ground Chicken.

Paoli GC, Wijey C, Nguyen LH, Chen CY, Yan X, Irwin PL.

Genome Announc. 2017 Nov 22;5(47). pii: e01357-17. doi: 10.1128/genomeA.01357-17.

8.

Preliminary comparative genomics revealed pathogenic potential and international spread of Staphylococcus argenteus.

Zhang DF, Zhi XY, Zhang J, Paoli GC, Cui Y, Shi C, Shi X.

BMC Genomics. 2017 Oct 23;18(1):808. doi: 10.1186/s12864-017-4149-9.

9.

Enrichment, Amplification, and Sequence-Based Typing of Salmonella enterica and Other Foodborne Pathogens.

Edlind T, Brewster JD, Paoli GC.

J Food Prot. 2017 Jan;80(1):15-24. doi: 10.4315/0362-028X.JFP-16-014.

PMID:
28221883
10.

Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain PA20.

Uhlich GA, Paoli GC, Zhang X, Dudley EG, Figler HM, Cottrell BJ, Andreozzi E.

Genome Announc. 2017 Jan 12;5(2). pii: e01460-16. doi: 10.1128/genomeA.01460-16.

11.

The Use of a Novel NanoLuc -Based Reporter Phage for the Detection of Escherichia coli O157:H7.

Zhang D, Coronel-Aguilera CP, Romero PL, Perry L, Minocha U, Rosenfield C, Gehring AG, Paoli GC, Bhunia AK, Applegate B.

Sci Rep. 2016 Sep 14;6:33235. doi: 10.1038/srep33235.

12.

Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain EDL932 (ATCC 43894).

Uhlich GA, Paoli GC, Chen CY, Cottrell BJ, Zhang X, Yan X.

Genome Announc. 2016 Jul 14;4(4). pii: e00647-16. doi: 10.1128/genomeA.00647-16.

13.

Synthesis of amino-rich silica-coated magnetic nanoparticles for the efficient capture of DNA for PCR.

Bai Y, Cui Y, Paoli GC, Shi C, Wang D, Zhou M, Zhang L, Shi X.

Colloids Surf B Biointerfaces. 2016 Sep 1;145:257-266. doi: 10.1016/j.colsurfb.2016.05.003. Epub 2016 May 4.

PMID:
27187190
14.

Genome-Scale Screening and Validation of Targets for Identification of Salmonella enterica and Serovar Prediction.

Zhou X, Zhang L, Shi C, Fratamico PM, Liu B, Paoli GC, Dan X, Zhuang X, Cui Y, Wang D, Shi X.

J Food Prot. 2016 Mar;79(3):376-83. doi: 10.4315/0362-028X.JFP-15-286.

PMID:
26939647
15.

Antibody Microarray for E. coli O157:H7 and Shiga Toxin in Microtiter Plates.

Gehring AG, Brewster JD, He Y, Irwin PL, Paoli GC, Simons T, Tu SI, Uknalis J.

Sensors (Basel). 2015 Dec 4;15(12):30429-42. doi: 10.3390/s151229807.

16.

Nanoparticles Affect PCR Primarily via Surface Interactions with PCR Components: Using Amino-Modified Silica-Coated Magnetic Nanoparticles as a Main Model.

Bai Y, Cui Y, Paoli GC, Shi C, Wang D, Shi X.

ACS Appl Mater Interfaces. 2015 Jun 24;7(24):13142-53. doi: 10.1021/am508842v. Epub 2015 Jun 9.

PMID:
26030087
17.

Genetically Marked Strains of Shiga Toxin-Producing O157:H7 and Non-O157 Escherichia coli: Tools for Detection and Modeling.

Paoli GC, Wijey C, Uhlich GA.

J Food Prot. 2015 May;78(5):888-901. doi: 10.4315/0362-028X.JFP-14-472.

PMID:
25951382
18.

Inactivation of avirulent pgm(+) and Δpgm Yersinia pestis by ultraviolet light (UV-C).

Paoli GC, Sommers CH, Scullen OJ, Wijey C.

Food Microbiol. 2014 Dec;44:168-72. doi: 10.1016/j.fm.2014.06.002. Epub 2014 Jun 17.

PMID:
25084659
19.

Automated immunomagnetic separation for the detection of Escherichia coli O157:H7 from spinach.

Chen J, Shi X, Gehring AG, Paoli GC.

Int J Food Microbiol. 2014 Jun 2;179:33-7. doi: 10.1016/j.ijfoodmicro.2014.03.022. Epub 2014 Mar 28.

PMID:
24718031
20.

Phenotypic and genotypic characterization of biofilm forming capabilities in non-O157 Shiga toxin-producing Escherichia coli strains.

Chen CY, Hofmann CS, Cottrell BJ, Strobaugh TP Jr, Paoli GC, Nguyen LH, Yan X, Uhlich GA.

PLoS One. 2013 Dec 27;8(12):e84863. doi: 10.1371/journal.pone.0084863. eCollection 2013.

21.

DNA extraction protocol for rapid PCR detection of pathogenic bacteria.

Brewster JD, Paoli GC.

Anal Biochem. 2013 Nov 1;442(1):107-9. doi: 10.1016/j.ab.2013.07.013. Epub 2013 Jul 16.

PMID:
23872000
22.

A rapid method for the detection of foodborne pathogens by extraction of a trace amount of DNA from raw milk based on amino-modified silica-coated magnetic nanoparticles and polymerase chain reaction.

Bai Y, Song M, Cui Y, Shi C, Wang D, Paoli GC, Shi X.

Anal Chim Acta. 2013 Jul 17;787:93-101. doi: 10.1016/j.aca.2013.05.043. Epub 2013 Jun 2.

PMID:
23830426
23.

How does Listeria monocytogenes combat acid conditions?

Smith JL, Liu Y, Paoli GC.

Can J Microbiol. 2013 Mar;59(3):141-52. doi: 10.1139/cjm-2012-0392. Epub 2012 Dec 20. Review.

PMID:
23540331
24.

A method for correcting standard-based real-time PCR DNA quantitation when the standard's polymerase reaction efficiency is significantly different from that of the unknown's.

Irwin PL, Nguyen LH, Chen CY, Uhlich GA, Paoli GC.

Anal Bioanal Chem. 2012 Mar;402(9):2713-25. doi: 10.1007/s00216-012-5737-9. Epub 2012 Feb 12.

PMID:
22327964
25.

Evidence for a bimodal distribution of Escherichia coli doubling times below a threshold initial cell concentration.

Irwin PL, Nguyen LH, Paoli GC, Chen CY.

BMC Microbiol. 2010 Aug 2;10:207. doi: 10.1186/1471-2180-10-207.

26.

A real-time PCR method for the detection of Salmonella enterica from food using a target sequence identified by comparative genomic analysis.

Chen J, Zhang L, Paoli GC, Shi C, Tu SI, Shi X.

Int J Food Microbiol. 2010 Feb 28;137(2-3):168-74. doi: 10.1016/j.ijfoodmicro.2009.12.004. Epub 2010 Jan 7.

PMID:
20060189
27.

SPR biosensor for the detection of L. monocytogenes using phage-displayed antibody.

Nanduri V, Bhunia AK, Tu SI, Paoli GC, Brewster JD.

Biosens Bioelectron. 2007 Sep 30;23(2):248-52. Epub 2007 Apr 19.

PMID:
17512186
28.

Development of Listeria monocytogenes-specific immunomagnetic beads using a single-chain antibody fragment.

Paoli GC, Kleina LG, Brewster JD.

Foodborne Pathog Dis. 2007 Spring;4(1):74-83.

PMID:
17378711
29.

Single-chain Fv antibody with specificity for Listeria monocytogenes.

Paoli GC, Chen CY, Brewster JD.

J Immunol Methods. 2004 Jun;289(1-2):147-55.

PMID:
15251420
30.

Sequence analysis and initial characterization of two isozymes of hydroxylaminobenzene mutase from Pseudomonas pseudoalcaligenes JS45.

Davis JK, Paoli GC, He Z, Nadeau LJ, Somerville CC, Spain JC.

Appl Environ Microbiol. 2000 Jul;66(7):2965-71.

31.

Aerobic degradation of dinitrotoluenes and pathway for bacterial degradation of 2,6-dinitrotoluene.

Nishino SF, Paoli GC, Spain JC.

Appl Environ Microbiol. 2000 May;66(5):2139-47.

32.

Physiological control and regulation of the Rhodobacter capsulatus cbb operons.

Paoli GC, Vichivanives P, Tabita FR.

J Bacteriol. 1998 Aug;180(16):4258-69.

35.

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