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Mathematical studies of the dynamics of finite-size binary neural networks: A review of recent progress.

Fasoli D, Panzeri S.

Math Biosci Eng. 2019 Sep 4;16(6):8025-8059. doi: 10.3934/mbe.2019404.


Categorical encoding of decision variables in orbitofrontal cortex.

Onken A, Xie J, Panzeri S, Padoa-Schioppa C.

PLoS Comput Biol. 2019 Oct 14;15(10):e1006667. doi: 10.1371/journal.pcbi.1006667. eCollection 2019 Oct.


Using intersection information to map stimulus information transfer within neural networks.

Pica G, Soltanipour M, Panzeri S.

Biosystems. 2019 Nov;185:104028. doi: 10.1016/j.biosystems.2019.104028. Epub 2019 Sep 21.


Infraslow State Fluctuations Govern Spontaneous fMRI Network Dynamics.

Gutierrez-Barragan D, Basson MA, Panzeri S, Gozzi A.

Curr Biol. 2019 Jul 22;29(14):2295-2306.e5. doi: 10.1016/j.cub.2019.06.017. Epub 2019 Jul 11.


Thalamic Drive of Cortical Parvalbumin-Positive Interneurons during Down States in Anesthetized Mice.

Zucca S, Pasquale V, Lagomarsino de Leon Roig P, Panzeri S, Fellin T.

Curr Biol. 2019 May 6;29(9):1481-1490.e6. doi: 10.1016/j.cub.2019.04.007. Epub 2019 Apr 25.


The Spectrum of Asynchronous Dynamics in Spiking Networks as a Model for the Diversity of Non-rhythmic Waking States in the Neocortex.

Zerlaut Y, Zucca S, Panzeri S, Fellin T.

Cell Rep. 2019 Apr 23;27(4):1119-1132.e7. doi: 10.1016/j.celrep.2019.03.102.


Information estimation using nonparametric copulas.

Safaai H, Onken A, Harvey CD, Panzeri S.

Phys Rev E. 2018 Nov;98(5). pii: 053302. doi: 10.1103/PhysRevE.98.053302. Epub 2018 Nov 5.


Optimized brute-force algorithms for the bifurcation analysis of a binary neural network model.

Fasoli D, Panzeri S.

Phys Rev E. 2019 Jan;99(1-1):012316. doi: 10.1103/PhysRevE.99.012316.


Perceptual learning of fine contrast discrimination changes neuronal tuning and population coding in macaque V4.

Sanayei M, Chen X, Chicharro D, Distler C, Panzeri S, Thiele A.

Nat Commun. 2018 Oct 12;9(1):4238. doi: 10.1038/s41467-018-06698-w.


The Locus Coeruleus Is a Complex and Differentiated Neuromodulatory System.

Totah NK, Neves RM, Panzeri S, Logothetis NK, Eschenko O.

Neuron. 2018 Sep 5;99(5):1055-1068.e6. doi: 10.1016/j.neuron.2018.07.037. Epub 2018 Aug 16.


Learning to focus on number.

Piazza M, De Feo V, Panzeri S, Dehaene S.

Cognition. 2018 Dec;181:35-45. doi: 10.1016/j.cognition.2018.07.011. Epub 2018 Aug 15.


Classification-Based Prediction of Effective Connectivity Between Timeseries With a Realistic Cortical Network Model.

Olivetti E, Benozzo D, Bím J, Panzeri S, Avesani P.

Front Comput Neurosci. 2018 Jun 5;12:38. doi: 10.3389/fncom.2018.00038. eCollection 2018.


Deciphering the functional role of spatial and temporal muscle synergies in whole-body movements.

Delis I, Hilt PM, Pozzo T, Panzeri S, Berret B.

Sci Rep. 2018 May 30;8(1):8391. doi: 10.1038/s41598-018-26780-z.


State-dependent representation of stimulus-evoked activity in high-density recordings of neural cultures.

Nieus T, D'Andrea V, Amin H, Di Marco S, Safaai H, Maccione A, Berdondini L, Panzeri S.

Sci Rep. 2018 Apr 3;8(1):5578. doi: 10.1038/s41598-018-23853-x.


The threshold for conscious report: Signal loss and response bias in visual and frontal cortex.

van Vugt B, Dagnino B, Vartak D, Safaai H, Panzeri S, Dehaene S, Roelfsema PR.

Science. 2018 May 4;360(6388):537-542. doi: 10.1126/science.aar7186. Epub 2018 Mar 22.


Pattern Storage, Bifurcations, and Groupwise Correlation Structure of an Exactly Solvable Asymmetric Neural Network Model.

Fasoli D, Cattani A, Panzeri S.

Neural Comput. 2018 May;30(5):1258-1295. doi: 10.1162/NECO_a_01069. Epub 2018 Mar 22.


Dopamine Is Signaled by Mid-frequency Oscillations and Boosts Output Layers Visual Information in Visual Cortex.

Zaldivar D, Goense J, Lowe SC, Logothetis NK, Panzeri S.

Curr Biol. 2018 Jan 22;28(2):224-235.e5. doi: 10.1016/j.cub.2017.12.006. Epub 2018 Jan 4.


Natural Translating Locomotion Modulates Cortical Activity at Action Observation.

Pozzo T, Inuggi A, Keuroghlanian A, Panzeri S, Saunier G, Campus C.

Front Syst Neurosci. 2017 Nov 7;11:83. doi: 10.3389/fnsys.2017.00083. eCollection 2017.


Transitions between asynchronous and synchronous states: a theory of correlations in small neural circuits.

Fasoli D, Cattani A, Panzeri S.

J Comput Neurosci. 2018 Feb;44(1):25-43. doi: 10.1007/s10827-017-0667-3. Epub 2017 Nov 10.


Inference of neuronal functional circuitry with spike-triggered non-negative matrix factorization.

Liu JK, Schreyer HM, Onken A, Rozenblit F, Khani MH, Krishnamoorthy V, Panzeri S, Gollisch T.

Nat Commun. 2017 Jul 26;8(1):149. doi: 10.1038/s41467-017-00156-9.


Distinct timescales of population coding across cortex.

Runyan CA, Piasini E, Panzeri S, Harvey CD.

Nature. 2017 Aug 3;548(7665):92-96. doi: 10.1038/nature23020. Epub 2017 Jul 19.


Cholinergic Control of Information Coding.

van Kempen J, Panzeri S, Thiele A.

Trends Neurosci. 2017 Sep;40(9):522-524. doi: 10.1016/j.tins.2017.06.006. Epub 2017 Jul 7.


State-Dependent Decoding Algorithms Improve the Performance of a Bidirectional BMI in Anesthetized Rats.

De Feo V, Boi F, Safaai H, Onken A, Panzeri S, Vato A.

Front Neurosci. 2017 May 31;11:269. doi: 10.3389/fnins.2017.00269. eCollection 2017.


Contributions of local speech encoding and functional connectivity to audio-visual speech perception.

Giordano BL, Ince RAA, Gross J, Schyns PG, Panzeri S, Kayser C.

Elife. 2017 Jun 7;6. pii: e24763. doi: 10.7554/eLife.24763.


An inhibitory gate for state transition in cortex.

Zucca S, D'Urso G, Pasquale V, Vecchia D, Pica G, Bovetti S, Moretti C, Varani S, Molano-Mazón M, Chiappalone M, Panzeri S, Fellin T.

Elife. 2017 May 16;6. pii: e26177. doi: 10.7554/eLife.26177.


Tumor Targeting with an isoDGR-Drug Conjugate.

Zanella S, Angerani S, Pina A, López Rivas P, Giannini C, Panzeri S, Arosio D, Caruso M, Gasparri F, Fraietta I, Albanese C, Marsiglio A, Pignataro L, Belvisi L, Piarulli U, Gennari C.

Chemistry. 2017 Jun 12;23(33):7910-7914. doi: 10.1002/chem.201701844. Epub 2017 May 26.


Emergence of transformation-tolerant representations of visual objects in rat lateral extrastriate cortex.

Tafazoli S, Safaai H, De Franceschi G, Rosselli FB, Vanzella W, Riggi M, Buffolo F, Panzeri S, Zoccolan D.

Elife. 2017 Apr 11;6. pii: e22794. doi: 10.7554/eLife.22794.


Homozygous Loss of Autism-Risk Gene CNTNAP2 Results in Reduced Local and Long-Range Prefrontal Functional Connectivity.

Liska A, Bertero A, Gomolka R, Sabbioni M, Galbusera A, Barsotti N, Panzeri S, Scattoni ML, Pasqualetti M, Gozzi A.

Cereb Cortex. 2018 Apr 1;28(4):1141-1153. doi: 10.1093/cercor/bhx022.


Cracking the Neural Code for Sensory Perception by Combining Statistics, Intervention, and Behavior.

Panzeri S, Harvey CD, Piasini E, Latham PE, Fellin T.

Neuron. 2017 Feb 8;93(3):491-507. doi: 10.1016/j.neuron.2016.12.036. Review.


Biofeedback Signals for Robotic Rehabilitation: Assessment of Wrist Muscle Activation Patterns in Healthy Humans.

Semprini M, Cuppone AV, Delis I, Squeri V, Panzeri S, Konczak J.

IEEE Trans Neural Syst Rehabil Eng. 2017 Jul;25(7):883-892. doi: 10.1109/TNSRE.2016.2636122. Epub 2016 Dec 6.


Using Matrix and Tensor Factorizations for the Single-Trial Analysis of Population Spike Trains.

Onken A, Liu JK, Karunasekara PP, Delis I, Gollisch T, Panzeri S.

PLoS Comput Biol. 2016 Nov 4;12(11):e1005189. doi: 10.1371/journal.pcbi.1005189. eCollection 2016 Nov.


The Deceptively Simple N170 Reflects Network Information Processing Mechanisms Involving Visual Feature Coding and Transfer Across Hemispheres.

Ince RA, Jaworska K, Gross J, Panzeri S, van Rijsbergen NJ, Rousselet GA, Schyns PG.

Cereb Cortex. 2016 Aug 22. [Epub ahead of print]


The Complexity of Dynamics in Small Neural Circuits.

Fasoli D, Cattani A, Panzeri S.

PLoS Comput Biol. 2016 Aug 5;12(8):e1004992. doi: 10.1371/journal.pcbi.1004992. eCollection 2016 Aug.


Attention Induced Gain Stabilization in Broad and Narrow-Spiking Cells in the Frontal Eye-Field of Macaque Monkeys.

Thiele A, Brandt C, Dasilva M, Gotthardt S, Chicharro D, Panzeri S, Distler C.

J Neurosci. 2016 Jul 20;36(29):7601-12. doi: 10.1523/JNEUROSCI.0872-16.2016.


Space-by-time manifold representation of dynamic facial expressions for emotion categorization.

Delis I, Chen C, Jack RE, Garrod OG, Panzeri S, Schyns PG.

J Vis. 2016 Jun 1;16(8):14. doi: 10.1167/16.8.14. Erratum in: J Vis. 2016 Jul 1;16(9):13.


Implications of the Dependence of Neuronal Activity on Neural Network States for the Design of Brain-Machine Interfaces.

Panzeri S, Safaai H, De Feo V, Vato A.

Front Neurosci. 2016 Apr 20;10:165. doi: 10.3389/fnins.2016.00165. eCollection 2016.


Space-by-time decomposition for single-trial decoding of M/EEG activity.

Delis I, Onken A, Schyns PG, Panzeri S, Philiastides MG.

Neuroimage. 2016 Jun;133:504-515. doi: 10.1016/j.neuroimage.2016.03.043. Epub 2016 Mar 24.


Unaltered Network Activity and Interneuronal Firing During Spontaneous Cortical Dynamics In Vivo in a Mouse Model of Severe Myoclonic Epilepsy of Infancy.

De Stasi AM, Farisello P, Marcon I, Cavallari S, Forli A, Vecchia D, Losi G, Mantegazza M, Panzeri S, Carmignoto G, Bacci A, Fellin T.

Cereb Cortex. 2016 Apr;26(4):1778-94. doi: 10.1093/cercor/bhw002. Epub 2016 Jan 26.


A bidirectional brain-machine interface connecting alert rodents to a dynamical system.

Boi F, Semprini M, Mussa Ivaldi FA, Panzeri S, Vato A.

Conf Proc IEEE Eng Med Biol Soc. 2015;2015:51-4. doi: 10.1109/EMBC.2015.7318298.


Computing the Local Field Potential (LFP) from Integrate-and-Fire Network Models.

Mazzoni A, Lindén H, Cuntz H, Lansner A, Panzeri S, Einevoll GT.

PLoS Comput Biol. 2015 Dec 14;11(12):e1004584. doi: 10.1371/journal.pcbi.1004584. eCollection 2015 Dec.


Tracing the Flow of Perceptual Features in an Algorithmic Brain Network.

Ince RA, van Rijsbergen NJ, Thut G, Rousselet GA, Gross J, Panzeri S, Schyns PG.

Sci Rep. 2015 Dec 4;5:17681. doi: 10.1038/srep17681.


Modeling the effect of locus coeruleus firing on cortical state dynamics and single-trial sensory processing.

Safaai H, Neves R, Eschenko O, Logothetis NK, Panzeri S.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12834-9. doi: 10.1073/pnas.1516539112. Epub 2015 Sep 28.


Shifts of Gamma Phase across Primary Visual Cortical Sites Reflect Dynamic Stimulus-Modulated Information Transfer.

Besserve M, Lowe SC, Logothetis NK, Schölkopf B, Panzeri S.

PLoS Biol. 2015 Sep 22;13(9):e1002257. doi: 10.1371/journal.pbio.1002257. eCollection 2015.


Task-discriminative space-by-time factorization of muscle activity.

Delis I, Panzeri S, Pozzo T, Berret B.

Front Hum Neurosci. 2015 Jul 10;9:399. doi: 10.3389/fnhum.2015.00399. eCollection 2015.


Rhythmic auditory cortex activity at multiple timescales shapes stimulus-response gain and background firing.

Kayser C, Wilson C, Safaai H, Sakata S, Panzeri S.

J Neurosci. 2015 May 20;35(20):7750-62. doi: 10.1523/JNEUROSCI.0268-15.2015.


A formalism for evaluating analytically the cross-correlation structure of a firing-rate network model.

Fasoli D, Faugeras O, Panzeri S.

J Math Neurosci. 2015 Mar 15;5:6. doi: 10.1186/s13408-015-0020-y. eCollection 2015.


Cyclic isoDGR and RGD peptidomimetics containing bifunctional diketopiperazine scaffolds are integrin antagonists.

Panzeri S, Zanella S, Arosio D, Vahdati L, Dal Corso A, Pignataro L, Paolillo M, Schinelli S, Belvisi L, Gennari C, Piarulli U.

Chemistry. 2015 Apr 13;21(16):6265-71. doi: 10.1002/chem.201406567. Epub 2015 Mar 11.


Neural population coding: combining insights from microscopic and mass signals.

Panzeri S, Macke JH, Gross J, Kayser C.

Trends Cogn Sci. 2015 Mar;19(3):162-72. doi: 10.1016/j.tics.2015.01.002. Epub 2015 Feb 7. Review.


Complementary contributions of spike timing and spike rate to perceptual decisions in rat S1 and S2 cortex.

Zuo Y, Safaai H, Notaro G, Mazzoni A, Panzeri S, Diamond ME.

Curr Biol. 2015 Feb 2;25(3):357-363. doi: 10.1016/j.cub.2014.11.065. Epub 2015 Jan 22.

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